Wall clock time and date at job start Mon Mar 30 2020 02:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46496 * 120.00147 * 2 1 4 4 C 1.53002 * 109.47428 * 89.99285 * 3 2 1 5 5 H 1.09000 * 109.46986 * 60.00432 * 4 3 2 6 6 F 1.39889 * 109.47380 * 300.00397 * 4 3 2 7 7 C 1.50706 * 109.46931 * 179.97438 * 4 3 2 8 8 H 1.07999 * 120.00193 * 0.02562 * 7 4 3 9 9 C 1.37879 * 119.99398 * 180.02562 * 7 4 3 10 10 N 1.31514 * 120.00338 * 0.02562 * 9 7 4 11 11 Si 1.86800 * 119.99424 * 180.02562 * 9 7 4 12 12 H 1.48503 * 109.46845 * 180.02562 * 11 9 7 13 13 H 1.48503 * 109.47399 * 299.99813 * 11 9 7 14 14 H 1.48498 * 109.47295 * 60.00420 * 11 9 7 15 15 C 1.39676 * 120.00104 * 179.97438 * 2 1 3 16 16 C 1.38915 * 120.07525 * 179.72559 * 15 2 1 17 17 C 1.38106 * 119.92381 * 179.77499 * 16 15 2 18 18 C 1.38284 * 120.07499 * 0.50473 * 17 16 15 19 19 C 1.38289 * 120.15180 * 359.74871 * 18 17 16 20 20 C 1.38103 * 120.07205 * 359.97438 * 19 18 17 21 21 H 1.09007 * 109.47119 * 90.00728 * 1 2 3 22 22 H 1.09007 * 109.46951 * 209.99896 * 1 2 3 23 23 H 1.08999 * 109.47527 * 330.00560 * 1 2 3 24 24 H 1.09004 * 109.47181 * 329.99537 * 3 2 1 25 25 H 1.08996 * 109.47366 * 209.99971 * 3 2 1 26 26 H 0.97000 * 119.99706 * 359.97438 * 10 9 7 27 27 H 1.07998 * 120.03582 * 0.02562 * 16 15 2 28 28 H 1.07994 * 119.96230 * 180.25403 * 17 16 15 29 29 H 1.07997 * 119.92425 * 179.72767 * 18 17 16 30 30 H 1.07992 * 119.96748 * 179.97438 * 19 18 17 31 31 H 1.07994 * 120.04061 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 1.4425 5 1 3.0415 0.9509 1.9564 6 9 1.2300 1.8778 2.1019 7 6 3.2065 3.0153 1.4424 8 1 3.4765 3.4829 0.5070 9 6 3.5516 3.6121 2.6364 10 7 3.2232 3.0424 3.7754 11 14 4.4857 5.2298 2.6363 12 1 4.7343 5.6579 4.0364 13 1 5.7831 5.0523 1.9358 14 1 3.6830 6.2649 1.9368 15 6 2.1634 -1.2096 0.0005 16 6 3.5525 -1.2114 -0.0052 17 6 4.2399 -2.4092 0.0000 18 6 3.5469 -3.6059 0.0005 19 6 2.1640 -3.6078 0.0009 20 6 1.4704 -2.4136 0.0014 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8901 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 1.6084 2.0283 -0.5139 25 1 3.1499 1.1384 -0.5138 26 1 2.7378 2.2026 3.7754 27 1 4.0943 -0.2772 -0.0097 28 1 5.3198 -2.4113 -0.0003 29 1 4.0870 -4.5412 0.0001 30 1 1.6259 -4.5441 0.0008 31 1 0.3905 -2.4157 0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260642743.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:46 Heat of formation + Delta-G solvation = -28.453768 kcal Electronic energy + Delta-G solvation = -15119.163181 eV Core-core repulsion = 12507.522778 eV Total energy + Delta-G solvation = -2611.640403 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.95252 -39.17202 -35.89700 -33.13605 -30.95274 -29.92455 -28.97333 -25.91311 -24.03222 -22.11292 -21.46588 -20.05729 -17.42170 -17.17556 -15.50328 -15.20551 -14.68898 -14.59256 -13.97547 -13.79384 -13.63052 -13.12177 -13.03239 -12.83384 -12.26216 -11.71604 -11.63207 -11.26238 -11.10228 -10.87718 -10.75971 -10.43116 -10.15579 -10.06841 -9.28256 -8.61666 -8.60203 -8.48840 -6.84586 -6.51639 -4.36981 1.76457 1.96088 3.36739 3.39040 3.56959 3.58309 4.23838 4.42917 5.14983 5.23492 5.25356 5.39636 5.54870 5.68494 5.74281 5.77722 5.87917 6.02527 6.06277 6.13461 6.17180 6.33541 6.60196 6.75502 6.81341 6.94975 7.19628 7.38636 7.58176 7.82709 7.97558 8.19880 8.64077 9.45729 10.86255 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.037635 B = 0.007533 C = 0.006827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.811708 B = 3716.129198 C = 4100.660436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.626 5.626 3 C 0.107 3.893 4 C 0.187 3.813 5 H 0.030 0.970 6 F -0.242 7.242 7 C -0.646 4.646 8 H 0.061 0.939 9 C 0.033 3.967 10 N -0.891 5.891 11 Si 1.074 2.926 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.225 3.775 16 C -0.197 4.197 17 C -0.072 4.072 18 C -0.194 4.194 19 C -0.076 4.076 20 C -0.208 4.208 21 H 0.041 0.959 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.276 0.724 27 H 0.126 0.874 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 -8.860 -8.032 12.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.334 5.334 3 C -0.015 4.015 4 C 0.150 3.850 5 H 0.048 0.952 6 F -0.224 7.224 7 C -0.684 4.684 8 H 0.079 0.921 9 C -0.175 4.175 10 N -0.524 5.524 11 Si 0.901 3.099 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.211 1.211 15 C 0.121 3.879 16 C -0.220 4.220 17 C -0.091 4.091 18 C -0.214 4.214 19 C -0.095 4.095 20 C -0.231 4.231 21 H 0.059 0.941 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.144 0.856 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.201 -7.521 -7.019 10.357 hybrid contribution -0.796 -1.140 -0.937 1.676 sum -1.997 -8.661 -7.956 11.929 Atomic orbital electron populations 1.21619 0.80095 1.02969 1.00178 1.46710 1.04950 1.03337 1.78451 1.22195 0.96772 0.83302 0.99266 1.19642 0.79591 0.97998 0.87772 0.95179 1.92684 1.49066 1.97259 1.83356 1.22211 1.41616 1.08532 0.96079 0.92108 1.25964 0.95986 1.03733 0.91862 1.70710 1.35270 1.18868 1.27585 0.83491 0.75842 0.74365 0.76241 1.20528 1.21114 1.21148 1.17954 0.91425 0.85926 0.92573 1.20848 0.92424 0.99015 1.09673 1.20857 0.99231 0.92005 0.96980 1.20782 0.94213 0.97499 1.08897 1.20780 0.94218 0.96807 0.97677 1.20630 0.99371 0.91257 1.11814 0.94075 0.91948 0.90804 0.90817 0.90089 0.91310 0.85617 0.86536 0.87044 0.86806 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.50 9.98 59.84 0.60 2.10 16 2 N -0.63 -11.71 2.95 -179.62 -0.53 -12.24 16 3 C 0.11 2.23 4.88 -4.04 -0.02 2.21 16 4 C 0.19 4.80 3.00 -27.88 -0.08 4.71 16 5 H 0.03 0.84 8.01 -51.93 -0.42 0.42 16 6 F -0.24 -6.63 14.88 2.25 0.03 -6.59 16 7 C -0.65 -17.99 8.86 -34.44 -0.30 -18.30 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.94 5.42 -17.82 -0.10 0.84 16 10 N -0.89 -27.39 13.56 55.43 0.75 -26.64 16 11 Si 1.07 24.73 29.90 -169.99 -5.08 19.65 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 15 C 0.22 4.07 6.55 -83.78 -0.55 3.52 16 16 C -0.20 -3.51 9.21 -39.38 -0.36 -3.87 16 17 C -0.07 -1.11 10.04 -39.61 -0.40 -1.51 16 18 C -0.19 -2.75 10.04 -39.55 -0.40 -3.14 16 19 C -0.08 -1.08 10.04 -39.61 -0.40 -1.48 16 20 C -0.21 -3.29 9.21 -39.38 -0.36 -3.65 16 21 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.90 6.20 -51.93 -0.32 0.57 16 23 H 0.07 1.26 7.25 -51.93 -0.38 0.88 16 24 H 0.07 1.49 8.07 -51.93 -0.42 1.07 16 25 H 0.08 1.60 6.19 -51.93 -0.32 1.28 16 26 H 0.28 8.64 6.59 -40.82 -0.27 8.37 16 27 H 0.13 2.32 6.14 -52.49 -0.32 2.00 16 28 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.65 6.14 -52.49 -0.32 1.33 16 LS Contribution 264.49 15.07 3.99 3.99 Total: -1.00 -31.12 264.49 -6.88 -38.00 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -3.66 Total: 2.40 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -2.37 Total: -18.56 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.22 Total: -38.88 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.03 Total: -6.59 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.65 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.12 -6.88 -38.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260642743.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.543 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds