Wall clock time and date at job start Mon Mar 30 2020 02:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46496 * 120.00147 * 2 1 4 4 C 1.53002 * 109.47428 * 89.99285 * 3 2 1 5 5 H 1.09000 * 109.46986 * 60.00432 * 4 3 2 6 6 F 1.39889 * 109.47380 * 300.00397 * 4 3 2 7 7 C 1.50706 * 109.46931 * 179.97438 * 4 3 2 8 8 H 1.07999 * 120.00193 * 0.02562 * 7 4 3 9 9 C 1.37879 * 119.99398 * 180.02562 * 7 4 3 10 10 N 1.31514 * 120.00338 * 0.02562 * 9 7 4 11 11 Si 1.86800 * 119.99424 * 180.02562 * 9 7 4 12 12 H 1.48503 * 109.46845 * 180.02562 * 11 9 7 13 13 H 1.48503 * 109.47399 * 299.99813 * 11 9 7 14 14 H 1.48498 * 109.47295 * 60.00420 * 11 9 7 15 15 C 1.39676 * 120.00104 * 179.97438 * 2 1 3 16 16 C 1.38915 * 120.07525 * 179.72559 * 15 2 1 17 17 C 1.38106 * 119.92381 * 179.77499 * 16 15 2 18 18 C 1.38284 * 120.07499 * 0.50473 * 17 16 15 19 19 C 1.38289 * 120.15180 * 359.74871 * 18 17 16 20 20 C 1.38103 * 120.07205 * 359.97438 * 19 18 17 21 21 H 1.09007 * 109.47119 * 90.00728 * 1 2 3 22 22 H 1.09007 * 109.46951 * 209.99896 * 1 2 3 23 23 H 1.08999 * 109.47527 * 330.00560 * 1 2 3 24 24 H 1.09004 * 109.47181 * 329.99537 * 3 2 1 25 25 H 1.08996 * 109.47366 * 209.99971 * 3 2 1 26 26 H 0.97000 * 119.99706 * 359.97438 * 10 9 7 27 27 H 1.07998 * 120.03582 * 0.02562 * 16 15 2 28 28 H 1.07994 * 119.96230 * 180.25403 * 17 16 15 29 29 H 1.07997 * 119.92425 * 179.72767 * 18 17 16 30 30 H 1.07992 * 119.96748 * 179.97438 * 19 18 17 31 31 H 1.07994 * 120.04061 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 1.4425 5 1 3.0415 0.9509 1.9564 6 9 1.2300 1.8778 2.1019 7 6 3.2065 3.0153 1.4424 8 1 3.4765 3.4829 0.5070 9 6 3.5516 3.6121 2.6364 10 7 3.2232 3.0424 3.7754 11 14 4.4857 5.2298 2.6363 12 1 4.7343 5.6579 4.0364 13 1 5.7831 5.0523 1.9358 14 1 3.6830 6.2649 1.9368 15 6 2.1634 -1.2096 0.0005 16 6 3.5525 -1.2114 -0.0052 17 6 4.2399 -2.4092 0.0000 18 6 3.5469 -3.6059 0.0005 19 6 2.1640 -3.6078 0.0009 20 6 1.4704 -2.4136 0.0014 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8901 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 1.6084 2.0283 -0.5139 25 1 3.1499 1.1384 -0.5138 26 1 2.7378 2.2026 3.7754 27 1 4.0943 -0.2772 -0.0097 28 1 5.3198 -2.4113 -0.0003 29 1 4.0870 -4.5412 0.0001 30 1 1.6259 -4.5441 0.0008 31 1 0.3905 -2.4157 0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260642743.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:46 Heat of formation + Delta-G solvation = -45.985906 kcal Electronic energy + Delta-G solvation = -15119.923431 eV Core-core repulsion = 12507.522778 eV Total energy + Delta-G solvation = -2612.400653 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.10478 -40.44265 -37.27039 -35.26656 -32.37203 -31.38266 -30.37039 -27.59498 -25.70615 -23.73750 -22.90884 -21.47386 -19.44910 -18.60359 -17.18666 -16.57571 -16.35952 -16.25828 -15.72018 -15.42469 -15.13155 -14.76470 -14.40640 -14.30356 -13.78779 -13.47994 -13.14568 -12.82887 -12.68235 -12.64464 -12.26683 -11.96740 -11.91358 -11.64863 -10.92975 -10.70810 -10.49157 -9.81246 -8.82732 -8.19084 -6.66570 0.55163 0.73342 1.51243 1.59857 1.79336 2.17878 2.51843 3.01353 3.04569 3.89862 3.96879 4.09207 4.13875 4.23679 4.31666 4.40475 4.60112 4.61828 4.64808 4.80452 4.87356 4.89041 5.14153 5.31183 5.40556 5.57758 5.64108 5.75122 5.96495 6.04702 6.28974 6.33618 6.60537 7.26127 8.56283 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.037635 B = 0.007533 C = 0.006827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.811708 B = 3716.129198 C = 4100.660436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.637 5.637 3 C 0.126 3.874 4 C 0.184 3.816 5 H 0.000 1.000 6 F -0.254 7.254 7 C -0.658 4.658 8 H 0.071 0.929 9 C -0.022 4.022 10 N -0.921 5.921 11 Si 1.123 2.877 12 H -0.284 1.284 13 H -0.261 1.261 14 H -0.266 1.266 15 C 0.196 3.804 16 C -0.225 4.225 17 C -0.080 4.080 18 C -0.188 4.188 19 C -0.074 4.074 20 C -0.212 4.212 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.055 0.945 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.257 0.743 27 H 0.106 0.894 28 H 0.135 0.865 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.528 -9.864 -9.277 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.347 5.347 3 C 0.002 3.998 4 C 0.147 3.853 5 H 0.018 0.982 6 F -0.235 7.235 7 C -0.696 4.696 8 H 0.090 0.910 9 C -0.223 4.223 10 N -0.555 5.555 11 Si 0.943 3.057 12 H -0.209 1.209 13 H -0.186 1.186 14 H -0.191 1.191 15 C 0.094 3.906 16 C -0.247 4.247 17 C -0.098 4.098 18 C -0.208 4.208 19 C -0.093 4.093 20 C -0.235 4.235 21 H 0.084 0.916 22 H 0.095 0.905 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.067 0.933 27 H 0.124 0.876 28 H 0.153 0.847 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.042 -8.570 -8.295 11.972 hybrid contribution -0.844 -0.974 -0.560 1.405 sum -1.885 -9.544 -8.855 13.154 Atomic orbital electron populations 1.21723 0.78653 1.02780 1.01695 1.46678 1.05818 1.02724 1.79474 1.21780 0.97665 0.84809 0.95593 1.19694 0.78685 0.96633 0.90330 0.98223 1.92645 1.49589 1.97249 1.84032 1.22678 1.41171 1.09171 0.96543 0.91040 1.27645 0.96242 1.06905 0.91489 1.70863 1.37136 1.18748 1.28785 0.82890 0.75833 0.70508 0.76512 1.20905 1.18574 1.19082 1.18259 0.91740 0.86445 0.94147 1.20912 0.92829 0.99328 1.11635 1.21156 1.00395 0.91767 0.96498 1.21216 0.94609 0.98148 1.06839 1.21242 0.94504 0.97591 0.95915 1.20926 1.00384 0.90948 1.11193 0.91588 0.90513 0.92607 0.90296 0.89570 0.93334 0.87629 0.84712 0.83846 0.83259 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.91 9.98 127.77 1.28 4.19 16 2 N -0.64 -23.88 2.95 -722.18 -2.13 -26.01 16 3 C 0.13 5.31 4.88 86.38 0.42 5.73 16 4 C 0.18 9.75 3.00 29.85 0.09 9.84 16 5 H 0.00 0.00 8.01 -2.39 -0.02 -0.02 16 6 F -0.25 -14.36 14.88 44.97 0.67 -13.69 16 7 C -0.66 -37.15 8.86 25.60 0.23 -36.92 16 8 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 9 C -0.02 -1.28 5.42 84.66 0.46 -0.82 16 10 N -0.92 -58.14 13.56 21.45 0.29 -57.85 16 11 Si 1.12 49.33 29.90 68.60 2.05 51.38 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 14 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 15 C 0.20 7.03 6.55 38.22 0.25 7.28 16 16 C -0.22 -8.08 9.21 22.40 0.21 -7.87 16 17 C -0.08 -2.35 10.04 22.25 0.22 -2.13 16 18 C -0.19 -4.76 10.04 22.29 0.22 -4.53 16 19 C -0.07 -1.85 10.04 22.25 0.22 -1.63 16 20 C -0.21 -6.28 9.21 22.40 0.21 -6.08 16 21 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 22 H 0.08 2.11 6.20 -2.38 -0.01 2.09 16 23 H 0.06 1.91 7.25 -2.39 -0.02 1.89 16 24 H 0.08 3.20 8.07 -2.39 -0.02 3.19 16 25 H 0.09 3.50 6.19 -2.39 -0.01 3.48 16 26 H 0.26 16.82 6.59 -92.71 -0.61 16.20 16 27 H 0.11 4.10 6.14 -2.91 -0.02 4.08 16 28 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 29 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.13 3.42 6.14 -2.91 -0.02 3.40 16 Total: -1.00 -68.28 264.49 5.96 -62.32 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.28 Total: 16.79 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 3.81 Total: -32.95 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -1.84 Total: -83.86 kcal Atomic # 9 Polarization: -14.36 SS G_CDS: 0.67 Total: -13.69 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.05 Total: 51.38 kcal Total: -68.28 5.96 -62.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260642743.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.337 kcal (2) G-P(sol) polarization free energy of solvation -68.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds