Wall clock time and date at job start Mon Mar 30 2020 02:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.89067 * 51.09793 * 10 9 7 12 12 C 1.54764 * 111.01432 * 174.99962 * 10 9 7 13 13 C 1.51689 * 102.47952 * 142.01137 * 12 10 9 14 14 C 1.50700 * 125.76945 * 164.74582 * 13 12 10 15 15 C 1.54271 * 110.02613 * 292.16142 * 14 13 12 16 16 C 1.54895 * 104.19218 * 217.10450 * 15 14 13 17 17 C 1.54892 * 102.74864 * 37.94732 * 16 15 14 18 18 C 1.53879 * 110.03035 * 174.99942 * 14 13 12 19 19 N 1.27644 * 108.45853 * 344.71670 * 13 12 10 20 20 O 1.41375 * 113.17407 * 359.68493 * 19 13 12 21 21 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 23 23 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 24 24 H 1.08997 * 110.80708 * 260.25843 * 12 10 9 25 25 H 1.08999 * 110.80905 * 23.76397 * 12 10 9 26 26 H 1.08994 * 110.01682 * 53.60418 * 14 13 12 27 27 H 1.08990 * 110.48909 * 335.78608 * 15 14 13 28 28 H 1.08998 * 110.48364 * 98.43744 * 15 14 13 29 29 H 1.08997 * 110.75567 * 279.63135 * 16 15 14 30 30 H 1.08999 * 110.75130 * 156.26013 * 16 15 14 31 31 H 1.09001 * 110.48723 * 203.37668 * 17 16 15 32 32 H 1.09004 * 110.48755 * 80.73199 * 17 16 15 33 33 H 1.08996 * 110.02677 * 238.56683 * 18 14 13 34 34 H 1.09004 * 110.03134 * 359.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 1 2.9837 -3.5421 0.7920 12 6 1.5116 -5.0192 0.1254 13 6 2.3209 -5.9155 -0.7925 14 6 2.2696 -7.4214 -0.8229 15 6 2.8595 -7.9964 0.4814 16 6 3.6163 -9.2693 0.0272 17 6 4.2312 -8.8363 -1.3269 18 6 3.1419 -7.9553 -1.9727 19 7 3.0521 -5.1787 -1.5353 20 8 2.8831 -3.7972 -1.2872 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5570 0.8898 23 1 0.6239 -2.5567 -0.8903 24 1 1.5461 -5.3841 1.1519 25 1 0.4821 -4.9367 -0.2230 26 1 1.2403 -7.7572 -0.9480 27 1 3.5487 -7.2843 0.9350 28 1 2.0627 -8.2550 1.1789 29 1 2.9254 -10.1010 -0.1106 30 1 4.3980 -9.5292 0.7409 31 1 4.4355 -9.7077 -1.9491 32 1 5.1420 -8.2597 -1.1654 33 1 2.5359 -8.5510 -2.6553 34 1 3.6018 -7.1252 -2.5090 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260643253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:23 Heat of formation + Delta-G solvation = -7.586625 kcal Electronic energy + Delta-G solvation = -15112.639460 eV Core-core repulsion = 12625.364230 eV Total energy + Delta-G solvation = -2487.275230 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.79510 -37.79844 -33.47210 -32.43018 -31.00433 -28.86914 -28.36665 -27.14148 -23.43553 -21.51150 -20.76908 -20.52119 -18.52266 -16.51311 -16.29701 -15.59490 -15.24785 -14.78434 -14.43490 -13.45456 -13.40297 -13.24494 -12.54405 -12.16979 -12.02900 -11.59133 -11.37539 -11.23726 -11.19416 -11.12712 -10.90271 -10.75954 -10.60511 -10.58237 -10.45962 -9.95161 -9.56069 -9.17212 -8.65105 -8.39132 -6.02377 -4.04073 2.30128 3.35812 3.39199 3.43489 3.67933 4.32342 4.46982 4.52728 4.57610 4.89204 5.18064 5.29209 5.33537 5.36353 5.37812 5.44138 5.51018 5.59172 5.62663 5.76919 5.81195 5.90410 6.09017 6.11239 6.20499 6.29916 6.36730 6.51322 6.62745 7.45101 7.60217 7.93968 8.09308 8.34698 8.99589 9.59531 11.09179 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.066888 B = 0.005294 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.510619 B = 5287.300757 C = 5415.714824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.028 3.972 10 C 0.054 3.946 11 H 0.072 0.928 12 C -0.151 4.151 13 C 0.072 3.928 14 C -0.022 4.022 15 C -0.115 4.115 16 C -0.124 4.124 17 C -0.124 4.124 18 C -0.127 4.127 19 N -0.304 5.304 20 O -0.182 6.182 21 H 0.262 0.738 22 H 0.035 0.965 23 H 0.028 0.972 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.807 -17.939 1.034 18.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.004 4.004 11 H 0.090 0.910 12 C -0.190 4.190 13 C -0.121 4.121 14 C -0.041 4.041 15 C -0.154 4.154 16 C -0.161 4.161 17 C -0.161 4.161 18 C -0.164 4.164 19 N -0.043 5.043 20 O -0.203 6.203 21 H 0.071 0.929 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.107 0.893 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.448 -17.576 0.098 18.131 hybrid contribution -0.282 1.122 0.760 1.384 sum 4.167 -16.454 0.858 16.995 Atomic orbital electron populations 1.69944 1.06071 1.26893 1.50766 1.24989 0.94873 0.99342 0.95125 0.86580 0.79534 0.82734 0.78753 1.21264 1.20203 1.20086 1.21096 0.93183 0.90506 1.50739 0.92380 1.19248 0.92917 0.90433 0.98337 1.24045 0.95377 0.95195 0.85792 0.90970 1.23241 1.01765 0.93617 1.00400 1.26008 0.93658 0.96771 0.95705 1.20412 1.01139 0.85919 0.96618 1.22401 0.99917 0.97088 0.95965 1.22498 0.99373 0.97219 0.97036 1.22357 0.98486 0.99066 0.96226 1.22259 0.96965 1.00086 0.97135 1.77549 1.16289 0.91381 1.19109 1.91323 1.79948 1.12199 1.36824 0.92854 0.94719 0.95385 0.89256 0.88544 0.88700 0.91102 0.90891 0.91335 0.91461 0.91700 0.91543 0.91516 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.52 -15.05 9.07 -34.44 -0.31 -15.36 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 9 C 0.03 0.74 4.67 -27.89 -0.13 0.61 16 10 C 0.05 1.19 3.70 -25.80 -0.10 1.10 16 11 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 12 C -0.15 -2.58 6.63 -26.47 -0.18 -2.76 16 13 C 0.07 1.17 6.30 -78.57 -0.49 0.68 16 14 C -0.02 -0.25 3.42 -90.65 -0.31 -0.56 16 15 C -0.12 -1.14 6.35 -25.07 -0.16 -1.30 16 16 C -0.12 -1.04 6.91 -24.73 -0.17 -1.21 16 17 C -0.12 -1.19 6.83 -25.07 -0.17 -1.36 16 18 C -0.13 -1.44 6.43 -25.61 -0.16 -1.61 16 19 N -0.30 -6.07 10.93 35.65 0.39 -5.68 16 20 O -0.18 -4.38 12.20 -11.36 -0.14 -4.52 16 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.10 1.64 7.91 -51.93 -0.41 1.22 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.79 7.85 -51.93 -0.41 0.38 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.18 6.59 -51.93 -0.34 0.84 16 LS Contribution 281.00 15.07 4.23 4.23 Total: -1.00 -31.91 281.00 -7.43 -39.34 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -5.35 Total: -4.01 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -2.28 Total: -20.18 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 1.13 Total: -32.04 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.14 Total: -4.52 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.91 -7.43 -39.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.757 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds