Wall clock time and date at job start Mon Mar 30 2020 02:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.89067 * 51.09793 * 10 9 7 12 12 C 1.54764 * 111.01432 * 174.99962 * 10 9 7 13 13 C 1.51689 * 102.47952 * 142.01137 * 12 10 9 14 14 C 1.50700 * 125.76945 * 164.74582 * 13 12 10 15 15 C 1.54271 * 110.02613 * 292.16142 * 14 13 12 16 16 C 1.54895 * 104.19218 * 217.10450 * 15 14 13 17 17 C 1.54892 * 102.74864 * 37.94732 * 16 15 14 18 18 C 1.53879 * 110.03035 * 174.99942 * 14 13 12 19 19 N 1.27644 * 108.45853 * 344.71670 * 13 12 10 20 20 O 1.41375 * 113.17407 * 359.68493 * 19 13 12 21 21 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 23 23 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 24 24 H 1.08997 * 110.80708 * 260.25843 * 12 10 9 25 25 H 1.08999 * 110.80905 * 23.76397 * 12 10 9 26 26 H 1.08994 * 110.01682 * 53.60418 * 14 13 12 27 27 H 1.08990 * 110.48909 * 335.78608 * 15 14 13 28 28 H 1.08998 * 110.48364 * 98.43744 * 15 14 13 29 29 H 1.08997 * 110.75567 * 279.63135 * 16 15 14 30 30 H 1.08999 * 110.75130 * 156.26013 * 16 15 14 31 31 H 1.09001 * 110.48723 * 203.37668 * 17 16 15 32 32 H 1.09004 * 110.48755 * 80.73199 * 17 16 15 33 33 H 1.08996 * 110.02677 * 238.56683 * 18 14 13 34 34 H 1.09004 * 110.03134 * 359.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 1 2.9837 -3.5421 0.7920 12 6 1.5116 -5.0192 0.1254 13 6 2.3209 -5.9155 -0.7925 14 6 2.2696 -7.4214 -0.8229 15 6 2.8595 -7.9964 0.4814 16 6 3.6163 -9.2693 0.0272 17 6 4.2312 -8.8363 -1.3269 18 6 3.1419 -7.9553 -1.9727 19 7 3.0521 -5.1787 -1.5353 20 8 2.8831 -3.7972 -1.2872 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5570 0.8898 23 1 0.6239 -2.5567 -0.8903 24 1 1.5461 -5.3841 1.1519 25 1 0.4821 -4.9367 -0.2230 26 1 1.2403 -7.7572 -0.9480 27 1 3.5487 -7.2843 0.9350 28 1 2.0627 -8.2550 1.1789 29 1 2.9254 -10.1010 -0.1106 30 1 4.3980 -9.5292 0.7409 31 1 4.4355 -9.7077 -1.9491 32 1 5.1420 -8.2597 -1.1654 33 1 2.5359 -8.5510 -2.6553 34 1 3.6018 -7.1252 -2.5090 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260643253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:23 Heat of formation + Delta-G solvation = -26.965634 kcal Electronic energy + Delta-G solvation = -15113.479797 eV Core-core repulsion = 12625.364230 eV Total energy + Delta-G solvation = -2488.115567 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.22698 -38.80544 -35.52687 -33.92630 -32.86459 -29.81551 -29.37501 -28.89457 -25.43506 -22.61835 -22.35007 -21.45154 -19.74573 -18.65560 -17.56577 -17.01302 -16.55553 -16.26466 -15.88590 -14.96591 -14.62432 -14.21539 -14.18538 -14.00478 -13.69393 -13.21865 -12.84206 -12.70946 -12.50436 -12.34173 -12.18383 -11.97283 -11.88205 -11.72562 -11.56729 -11.43376 -11.23694 -11.20905 -10.63418 -10.28589 -8.26440 -6.36692 0.94614 1.36544 1.40400 1.48393 2.16393 2.37516 3.07063 3.11689 3.53038 3.69879 3.76725 3.89924 4.00941 4.13337 4.52281 4.54839 4.60442 4.61191 4.70312 4.73111 4.78285 4.86797 5.04309 5.07156 5.12723 5.27884 5.30020 5.34198 5.45486 5.50089 5.53926 5.68804 6.12076 6.56419 6.74201 7.31417 8.85216 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.066888 B = 0.005294 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.510619 B = 5287.300757 C = 5415.714824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.050 0.950 9 C 0.036 3.964 10 C 0.052 3.948 11 H 0.070 0.930 12 C -0.144 4.144 13 C 0.102 3.898 14 C -0.024 4.024 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.124 4.124 18 C -0.130 4.130 19 N -0.335 5.335 20 O -0.235 6.235 21 H 0.267 0.733 22 H 0.028 0.972 23 H -0.004 1.004 24 H 0.127 0.873 25 H 0.101 0.899 26 H 0.124 0.876 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.834 -19.830 1.924 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.188 1.188 6 H -0.200 1.200 7 C -0.582 4.582 8 H 0.069 0.931 9 C -0.002 4.002 10 C -0.006 4.006 11 H 0.088 0.912 12 C -0.183 4.183 13 C -0.091 4.091 14 C -0.043 4.043 15 C -0.152 4.152 16 C -0.153 4.153 17 C -0.161 4.161 18 C -0.168 4.168 19 N -0.078 5.078 20 O -0.252 6.252 21 H 0.075 0.925 22 H 0.046 0.954 23 H 0.014 0.986 24 H 0.145 0.855 25 H 0.119 0.881 26 H 0.142 0.858 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.479 -19.448 0.996 19.982 hybrid contribution -0.327 1.597 0.466 1.695 sum 4.152 -17.852 1.463 18.387 Atomic orbital electron populations 1.70050 1.07524 1.28093 1.51173 1.25890 0.95840 1.03126 0.94391 0.85503 0.78381 0.78141 0.79064 1.20080 1.18837 1.20004 1.21458 0.93155 0.92278 1.51268 0.93138 1.19050 0.93220 0.91648 0.96288 1.23813 0.94865 0.96307 0.85642 0.91215 1.23210 1.01251 0.90980 1.02877 1.26807 0.90709 0.98749 0.92829 1.20789 1.03128 0.82215 0.98144 1.22444 1.00446 0.97276 0.95065 1.22498 0.99765 0.96950 0.96110 1.22365 0.97298 0.99118 0.97363 1.22289 0.97656 0.99595 0.97246 1.77645 1.19376 0.89402 1.21412 1.91272 1.80658 1.15755 1.37482 0.92466 0.95406 0.98559 0.85488 0.88079 0.85823 0.92729 0.88454 0.89249 0.90509 0.89991 0.93142 0.89642 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.97 45.93 29.54 68.60 2.03 47.95 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.54 -32.64 9.07 25.60 0.23 -32.41 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.04 1.95 4.67 29.85 0.14 2.09 16 10 C 0.05 2.35 3.70 31.20 0.12 2.47 16 11 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 12 C -0.14 -4.77 6.63 30.77 0.20 -4.57 16 13 C 0.10 3.21 6.30 46.90 0.30 3.50 16 14 C -0.02 -0.49 3.42 -10.81 -0.04 -0.52 16 15 C -0.11 -1.84 6.35 31.67 0.20 -1.64 16 16 C -0.12 -1.51 6.91 31.89 0.22 -1.29 16 17 C -0.12 -2.07 6.83 31.67 0.22 -1.85 16 18 C -0.13 -2.70 6.43 31.32 0.20 -2.49 16 19 N -0.33 -13.61 10.93 -40.61 -0.44 -14.05 16 20 O -0.24 -11.80 12.20 -38.28 -0.47 -12.27 16 21 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 22 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 23 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 24 H 0.13 3.25 8.14 -2.39 -0.02 3.24 16 25 H 0.10 3.32 7.91 -2.39 -0.02 3.30 16 26 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.05 1.08 7.85 -2.39 -0.02 1.06 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.05 1.47 6.59 -2.38 -0.02 1.45 16 Total: -1.00 -71.84 281.00 4.71 -67.12 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.06 Total: 3.84 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 2.25 Total: -35.90 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -0.16 Total: -70.75 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.47 Total: -12.27 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -71.84 4.71 -67.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.158 kcal (2) G-P(sol) polarization free energy of solvation -71.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds