Wall clock time and date at job start Mon Mar 30 2020 03:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00080 * 2 1 4 4 H 1.48499 * 109.47016 * 239.72579 * 3 2 1 5 5 H 1.48496 * 109.46819 * 359.72460 * 3 2 1 6 6 H 1.48495 * 109.47249 * 119.72530 * 3 2 1 7 7 C 1.37878 * 120.00068 * 179.72032 * 2 1 3 8 8 H 1.08005 * 119.99897 * 174.65518 * 7 2 1 9 9 C 1.50701 * 120.00000 * 354.66258 * 7 2 1 10 10 H 1.08998 * 109.47091 * 5.02370 * 9 7 2 11 11 C 1.52990 * 109.47025 * 245.02017 * 9 7 2 12 12 C 1.52999 * 117.50072 * 133.83061 * 11 9 7 13 13 C 1.53002 * 60.00135 * 252.51037 * 12 11 9 14 14 C 1.53002 * 109.46998 * 125.01786 * 9 7 2 15 15 H 1.09000 * 109.66845 * 59.50387 * 14 9 7 16 16 C 1.53352 * 109.67160 * 180.02562 * 14 9 7 17 17 C 1.52921 * 108.67446 * 187.26841 * 16 14 9 18 18 N 1.45754 * 110.48408 * 309.24807 * 17 16 14 19 19 C 1.33350 * 124.10861 * 19.09584 * 18 17 16 20 20 O 1.21285 * 118.24420 * 177.77954 * 19 18 17 21 21 C 1.50176 * 123.50897 * 357.73281 * 19 18 17 22 22 H 0.97005 * 119.99938 * 0.27492 * 1 2 3 23 23 H 1.09003 * 115.55201 * 279.53528 * 11 9 7 24 24 H 1.09008 * 117.49513 * 359.97438 * 12 11 9 25 25 H 1.08998 * 117.50252 * 145.01677 * 12 11 9 26 26 H 1.08998 * 117.49799 * 252.50944 * 13 12 11 27 27 H 1.09000 * 117.51722 * 107.47749 * 13 12 11 28 28 H 1.09003 * 109.60332 * 307.02178 * 16 14 9 29 29 H 1.08992 * 109.60247 * 67.34505 * 16 14 9 30 30 H 1.08999 * 109.29858 * 69.55581 * 17 16 14 31 31 H 1.08994 * 109.30287 * 189.14328 * 17 16 14 32 32 H 0.97001 * 117.94617 * 199.07595 * 18 17 16 33 33 H 1.08992 * 109.41727 * 257.48462 * 21 19 18 34 34 H 1.09000 * 109.38578 * 137.73919 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1079 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0067 6 1 3.0979 1.6994 1.2158 7 6 2.0045 -1.1940 0.0058 8 1 3.0810 -1.1965 -0.0813 9 6 1.2559 -2.4957 0.1336 10 1 0.1836 -2.3010 0.1199 11 6 1.6343 -3.1744 1.4515 12 6 0.4982 -3.7353 2.3090 13 6 1.2355 -2.4690 2.7493 14 6 1.6228 -3.4119 -1.0356 15 1 2.6961 -3.6016 -1.0303 16 6 0.8628 -4.7380 -0.9105 17 6 1.3788 -5.7008 -1.9806 18 7 1.3685 -5.0610 -3.2902 19 6 1.3213 -3.7415 -3.4774 20 8 1.3589 -3.3215 -4.6146 21 6 1.2231 -2.7480 -2.3556 22 1 -0.4850 0.8401 -0.0040 23 1 2.5774 -3.7210 1.4450 24 1 -0.5190 -3.6204 1.9343 25 1 0.6935 -4.6512 2.8667 26 1 1.9159 -2.5519 3.5968 27 1 0.7038 -1.5213 2.6642 28 1 1.0326 -5.1649 0.0780 29 1 -0.2032 -4.5636 -1.0554 30 1 2.3973 -6.0009 -1.7343 31 1 0.7400 -6.5835 -2.0093 32 1 1.3982 -5.6307 -4.0747 33 1 0.1982 -2.3844 -2.2823 34 1 1.8900 -1.9094 -2.5557 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260663716.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:51 Heat of formation + Delta-G solvation = -34.720375 kcal Electronic energy + Delta-G solvation = -15848.681403 eV Core-core repulsion = 13360.229565 eV Total energy + Delta-G solvation = -2488.451838 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.71370 -37.26738 -35.52397 -33.34617 -32.00686 -29.07374 -27.68298 -24.44141 -22.62306 -21.39507 -21.19332 -18.96025 -18.53325 -16.87346 -16.37292 -15.38608 -14.94655 -14.56103 -14.28470 -13.74633 -13.61426 -12.84285 -12.72936 -12.44721 -11.76667 -11.42602 -11.10205 -10.99261 -10.66616 -10.61399 -10.52721 -10.21331 -10.11075 -9.70770 -9.44481 -9.08350 -8.83461 -8.70734 -8.53398 -8.39322 -6.03996 -4.04821 3.22033 3.32449 3.37738 3.40708 3.77062 4.41857 4.87305 5.22526 5.24140 5.32622 5.35430 5.59154 5.72330 5.90620 6.01426 6.02628 6.08378 6.28303 6.36823 6.46101 6.50967 6.60271 6.87170 6.99616 6.99964 7.07413 7.15490 7.22786 7.53567 7.79555 7.80560 7.91102 8.39965 8.72850 9.04792 9.57955 11.04325 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.022439 B = 0.011470 C = 0.008194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.544130 B = 2440.523243 C = 3416.260559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.884 3.116 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.504 4.504 8 H 0.051 0.949 9 C 0.063 3.937 10 H 0.073 0.927 11 C -0.116 4.116 12 C -0.204 4.204 13 C -0.170 4.170 14 C -0.073 4.073 15 H 0.056 0.944 16 C -0.135 4.135 17 C 0.113 3.887 18 N -0.726 5.726 19 C 0.518 3.482 20 O -0.576 6.576 21 C -0.110 4.110 22 H 0.262 0.738 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.388 0.612 33 H 0.099 0.901 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.076 -9.840 1.078 9.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.131 4.131 3 Si 0.712 3.288 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.542 4.542 8 H 0.070 0.930 9 C 0.044 3.956 10 H 0.092 0.908 11 C -0.134 4.134 12 C -0.242 4.242 13 C -0.207 4.207 14 C -0.092 4.092 15 H 0.075 0.925 16 C -0.173 4.173 17 C -0.012 4.012 18 N -0.378 5.378 19 C 0.308 3.692 20 O -0.456 6.456 21 C -0.149 4.149 22 H 0.072 0.928 23 H 0.095 0.905 24 H 0.103 0.897 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.222 0.778 33 H 0.117 0.883 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.921 -9.327 0.715 9.400 hybrid contribution 0.524 0.617 -0.083 0.814 sum 1.445 -8.710 0.632 8.852 Atomic orbital electron populations 1.69860 1.05819 1.26751 1.50643 1.24890 0.94753 0.98926 0.94565 0.86789 0.79809 0.83560 0.78692 1.20198 1.21414 1.20307 1.20905 0.93130 0.90252 1.49913 0.93046 1.18651 0.99880 0.91307 0.85740 0.90837 1.22566 0.95772 1.00464 0.94619 1.22980 0.98068 0.96748 1.06363 1.22665 1.03382 0.96489 0.98203 1.21359 0.98295 0.93268 0.96263 0.92518 1.22054 1.00759 0.96592 0.97880 1.21408 1.00697 0.95823 0.83253 1.45556 1.75779 1.07206 1.09219 1.20968 0.73685 0.83189 0.91406 1.90675 1.51543 1.78330 1.25030 1.21524 1.05369 0.96590 0.91441 0.92840 0.90530 0.89705 0.91061 0.91157 0.88526 0.89972 0.91627 0.92363 0.91697 0.77825 0.88266 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.21 12.62 55.43 0.70 -23.51 16 2 C 0.07 1.84 5.45 -17.82 -0.10 1.74 16 3 Si 0.88 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.50 -12.61 7.11 -34.44 -0.24 -12.86 16 8 H 0.05 1.31 7.82 -52.48 -0.41 0.90 16 9 C 0.06 1.37 1.78 -91.77 -0.16 1.21 16 10 H 0.07 1.82 6.72 -51.93 -0.35 1.47 16 11 C -0.12 -2.25 3.88 -90.62 -0.35 -2.60 16 12 C -0.20 -3.56 9.67 -26.73 -0.26 -3.82 16 13 C -0.17 -3.34 10.01 -26.73 -0.27 -3.60 16 14 C -0.07 -1.36 1.83 -90.40 -0.17 -1.53 16 15 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 16 C -0.14 -2.03 5.19 -26.59 -0.14 -2.17 16 17 C 0.11 1.41 7.17 -4.48 -0.03 1.38 16 18 N -0.73 -10.86 5.45 -61.39 -0.33 -11.19 16 19 C 0.52 9.97 7.71 -11.87 -0.09 9.88 16 20 O -0.58 -13.06 17.78 5.55 0.10 -12.96 16 21 C -0.11 -2.23 4.91 -28.10 -0.14 -2.37 16 22 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 23 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 24 H 0.08 1.53 8.08 -51.92 -0.42 1.11 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.10 2.17 8.14 -51.93 -0.42 1.74 16 28 H 0.08 1.16 6.59 -51.93 -0.34 0.81 16 29 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.39 5.07 8.80 -40.82 -0.36 4.71 16 33 H 0.10 2.16 8.10 -51.93 -0.42 1.74 16 34 H 0.10 2.33 7.67 -51.93 -0.40 1.93 16 LS Contribution 278.61 15.07 4.20 4.20 Total: -1.00 -28.36 278.61 -7.52 -35.88 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.21 Total: 6.59 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -1.95 Total: -14.75 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.36 Total: -34.70 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.10 Total: -12.96 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.36 -7.52 -35.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260663716.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.163 kcal (2) G-P(sol) polarization free energy of solvation -28.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds