Wall clock time and date at job start Mon Mar 30 2020 03:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00080 * 2 1 4 4 H 1.48499 * 109.47016 * 239.72579 * 3 2 1 5 5 H 1.48496 * 109.46819 * 359.72460 * 3 2 1 6 6 H 1.48495 * 109.47249 * 119.72530 * 3 2 1 7 7 C 1.37878 * 120.00068 * 179.72032 * 2 1 3 8 8 H 1.08005 * 119.99897 * 174.65518 * 7 2 1 9 9 C 1.50701 * 120.00000 * 354.66258 * 7 2 1 10 10 H 1.08998 * 109.47091 * 5.02370 * 9 7 2 11 11 C 1.52990 * 109.47025 * 245.02017 * 9 7 2 12 12 C 1.52999 * 117.50072 * 133.83061 * 11 9 7 13 13 C 1.53002 * 60.00135 * 252.51037 * 12 11 9 14 14 C 1.53002 * 109.46998 * 125.01786 * 9 7 2 15 15 H 1.09000 * 109.66845 * 59.50387 * 14 9 7 16 16 C 1.53352 * 109.67160 * 180.02562 * 14 9 7 17 17 C 1.52921 * 108.67446 * 187.26841 * 16 14 9 18 18 N 1.45754 * 110.48408 * 309.24807 * 17 16 14 19 19 C 1.33350 * 124.10861 * 19.09584 * 18 17 16 20 20 O 1.21285 * 118.24420 * 177.77954 * 19 18 17 21 21 C 1.50176 * 123.50897 * 357.73281 * 19 18 17 22 22 H 0.97005 * 119.99938 * 0.27492 * 1 2 3 23 23 H 1.09003 * 115.55201 * 279.53528 * 11 9 7 24 24 H 1.09008 * 117.49513 * 359.97438 * 12 11 9 25 25 H 1.08998 * 117.50252 * 145.01677 * 12 11 9 26 26 H 1.08998 * 117.49799 * 252.50944 * 13 12 11 27 27 H 1.09000 * 117.51722 * 107.47749 * 13 12 11 28 28 H 1.09003 * 109.60332 * 307.02178 * 16 14 9 29 29 H 1.08992 * 109.60247 * 67.34505 * 16 14 9 30 30 H 1.08999 * 109.29858 * 69.55581 * 17 16 14 31 31 H 1.08994 * 109.30287 * 189.14328 * 17 16 14 32 32 H 0.97001 * 117.94617 * 199.07595 * 18 17 16 33 33 H 1.08992 * 109.41727 * 257.48462 * 21 19 18 34 34 H 1.09000 * 109.38578 * 137.73919 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1079 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0067 6 1 3.0979 1.6994 1.2158 7 6 2.0045 -1.1940 0.0058 8 1 3.0810 -1.1965 -0.0813 9 6 1.2559 -2.4957 0.1336 10 1 0.1836 -2.3010 0.1199 11 6 1.6343 -3.1744 1.4515 12 6 0.4982 -3.7353 2.3090 13 6 1.2355 -2.4690 2.7493 14 6 1.6228 -3.4119 -1.0356 15 1 2.6961 -3.6016 -1.0303 16 6 0.8628 -4.7380 -0.9105 17 6 1.3788 -5.7008 -1.9806 18 7 1.3685 -5.0610 -3.2902 19 6 1.3213 -3.7415 -3.4774 20 8 1.3589 -3.3215 -4.6146 21 6 1.2231 -2.7480 -2.3556 22 1 -0.4850 0.8401 -0.0040 23 1 2.5774 -3.7210 1.4450 24 1 -0.5190 -3.6204 1.9343 25 1 0.6935 -4.6512 2.8667 26 1 1.9159 -2.5519 3.5968 27 1 0.7038 -1.5213 2.6642 28 1 1.0326 -5.1649 0.0780 29 1 -0.2032 -4.5636 -1.0554 30 1 2.3973 -6.0009 -1.7343 31 1 0.7400 -6.5835 -2.0093 32 1 1.3982 -5.6307 -4.0747 33 1 0.1982 -2.3844 -2.2823 34 1 1.8900 -1.9094 -2.5557 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260663716.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:51 Heat of formation + Delta-G solvation = -52.499688 kcal Electronic energy + Delta-G solvation = -15849.452372 eV Core-core repulsion = 13360.229565 eV Total energy + Delta-G solvation = -2489.222807 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.19470 -38.85410 -36.96603 -35.00317 -33.76602 -30.45524 -29.44458 -26.15573 -24.06796 -22.86549 -22.71169 -20.60592 -19.94111 -18.41190 -18.14839 -16.85467 -16.49824 -16.34665 -15.78982 -15.26964 -14.98328 -14.55285 -14.20777 -13.97069 -13.32900 -13.21468 -12.83337 -12.63300 -12.37908 -12.14670 -12.10461 -11.86011 -11.74564 -11.28445 -10.98538 -10.83063 -10.61563 -10.34938 -10.07695 -9.96976 -8.05184 -6.08436 1.40877 1.43030 1.47905 1.67317 2.46037 2.48307 3.20754 3.43013 3.84232 4.04015 4.12423 4.19946 4.36364 4.53713 4.54115 4.65056 4.73276 4.87748 4.97462 5.02383 5.11203 5.18416 5.36254 5.39506 5.47854 5.54219 5.59995 5.77322 5.86329 6.00773 6.07152 6.39227 6.48451 7.08492 7.29644 7.55263 9.01911 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.022439 B = 0.011470 C = 0.008194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.544130 B = 2440.523243 C = 3416.260559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.026 3.974 3 Si 0.927 3.073 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.504 4.504 8 H 0.044 0.956 9 C 0.063 3.937 10 H 0.039 0.961 11 C -0.124 4.124 12 C -0.172 4.172 13 C -0.187 4.187 14 C -0.066 4.066 15 H 0.060 0.940 16 C -0.129 4.129 17 C 0.111 3.889 18 N -0.707 5.707 19 C 0.520 3.480 20 O -0.617 6.617 21 C -0.105 4.105 22 H 0.257 0.743 23 H 0.097 0.903 24 H 0.074 0.926 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.403 0.597 33 H 0.075 0.925 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 -12.745 1.891 13.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.173 4.173 3 Si 0.755 3.245 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.044 3.956 10 H 0.057 0.943 11 C -0.142 4.142 12 C -0.209 4.209 13 C -0.225 4.225 14 C -0.085 4.085 15 H 0.079 0.921 16 C -0.166 4.166 17 C -0.011 4.011 18 N -0.357 5.357 19 C 0.309 3.691 20 O -0.501 6.501 21 C -0.144 4.144 22 H 0.066 0.934 23 H 0.115 0.885 24 H 0.093 0.907 25 H 0.128 0.872 26 H 0.110 0.890 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.239 0.761 33 H 0.093 0.907 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.777 -12.280 1.552 12.505 hybrid contribution 0.274 1.487 -0.301 1.542 sum 2.051 -10.793 1.251 11.057 Atomic orbital electron populations 1.69975 1.06804 1.26726 1.52646 1.25433 0.95292 1.01355 0.95200 0.86084 0.78803 0.81034 0.78597 1.20298 1.21672 1.19747 1.21253 0.92911 0.91956 1.48146 0.93800 1.18536 0.97284 0.91124 0.88649 0.94304 1.22425 0.97616 1.01218 0.92954 1.22981 0.96659 0.96895 1.04402 1.22629 1.04573 0.95990 0.99272 1.21213 0.98979 0.94705 0.93627 0.92111 1.21979 0.99641 0.94844 1.00162 1.21676 1.03025 0.95807 0.80625 1.45421 1.73391 1.05678 1.11238 1.20606 0.73923 0.84546 0.90032 1.90654 1.53863 1.79428 1.26180 1.21337 1.03103 0.96573 0.93436 0.93411 0.88537 0.90710 0.87202 0.88965 0.92444 0.87962 0.92528 0.89932 0.87502 0.76105 0.90705 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.16 12.62 21.45 0.27 -51.89 16 2 C 0.03 1.38 5.45 84.66 0.46 1.84 16 3 Si 0.93 43.65 29.54 68.60 2.03 45.67 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.50 -25.78 7.11 25.60 0.18 -25.60 16 8 H 0.04 2.26 7.82 -2.91 -0.02 2.24 16 9 C 0.06 2.75 1.78 -11.54 -0.02 2.73 16 10 H 0.04 1.97 6.72 -2.39 -0.02 1.96 16 11 C -0.12 -4.57 3.88 -10.80 -0.04 -4.61 16 12 C -0.17 -5.51 9.67 30.59 0.30 -5.21 16 13 C -0.19 -7.13 10.01 30.60 0.31 -6.82 16 14 C -0.07 -2.42 1.83 -10.65 -0.02 -2.44 16 15 H 0.06 2.18 8.13 -2.39 -0.02 2.16 16 16 C -0.13 -3.46 5.19 30.69 0.16 -3.30 16 17 C 0.11 2.26 7.17 86.49 0.62 2.88 16 18 N -0.71 -19.05 5.45 -467.32 -2.55 -21.59 16 19 C 0.52 19.77 7.71 87.71 0.68 20.45 16 20 O -0.62 -28.27 17.78 -3.04 -0.05 -28.32 16 21 C -0.10 -4.36 4.91 29.71 0.15 -4.22 16 22 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 23 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 24 H 0.07 2.56 8.08 -2.38 -0.02 2.54 16 25 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 27 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.10 2.40 6.59 -2.39 -0.02 2.38 16 29 H 0.06 1.65 8.12 -2.39 -0.02 1.63 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.40 9.15 8.80 -92.71 -0.82 8.34 16 33 H 0.07 3.45 8.10 -2.39 -0.02 3.43 16 34 H 0.07 3.42 7.67 -2.39 -0.02 3.40 16 Total: -1.00 -64.31 278.61 2.73 -61.58 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.27 Total: 18.87 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 2.77 Total: -24.32 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -2.27 Total: -73.48 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.05 Total: -28.32 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -64.31 2.73 -61.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260663716.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.080 kcal (2) G-P(sol) polarization free energy of solvation -64.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds