Wall clock time and date at job start Mon Mar 30 2020 03:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00115 * 2 1 4 4 H 1.48496 * 109.46817 * 269.99680 * 3 2 1 5 5 H 1.48498 * 109.47146 * 29.99816 * 3 2 1 6 6 H 1.48498 * 109.46918 * 149.99937 * 3 2 1 7 7 C 1.37881 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99689 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99934 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.47159 * 299.99456 * 9 7 2 11 11 C 1.52999 * 109.47334 * 59.99880 * 9 7 2 12 12 C 1.53005 * 117.49625 * 250.59607 * 11 9 7 13 13 C 1.53001 * 117.50070 * 181.97428 * 11 9 7 14 14 C 1.53007 * 109.46906 * 179.97438 * 9 7 2 15 15 H 1.09003 * 109.67195 * 182.52412 * 14 9 7 16 16 C 1.53342 * 109.67471 * 62.02486 * 14 9 7 17 17 C 1.52923 * 108.67634 * 172.73543 * 16 14 9 18 18 N 1.45758 * 110.31880 * 50.85480 * 17 16 14 19 19 C 1.33092 * 124.30749 * 340.59464 * 18 17 16 20 20 O 1.21282 * 118.32534 * 182.39972 * 19 18 17 21 21 C 1.50174 * 123.42741 * 2.61965 * 19 18 17 22 22 H 0.97001 * 119.99508 * 0.02562 * 1 2 3 23 23 H 1.09000 * 115.55225 * 36.30012 * 11 9 7 24 24 H 1.08997 * 117.49818 * 359.97438 * 12 11 9 25 25 H 1.08999 * 117.49869 * 145.02127 * 12 11 9 26 26 H 1.08999 * 117.50110 * 214.97991 * 13 11 9 27 27 H 1.09001 * 117.49421 * 359.97438 * 13 11 9 28 28 H 1.08998 * 109.60639 * 52.97436 * 16 14 9 29 29 H 1.09003 * 109.60082 * 292.49519 * 16 14 9 30 30 H 1.09000 * 109.30114 * 171.06173 * 17 16 14 31 31 H 1.08995 * 109.29960 * 290.64657 * 17 16 14 32 32 H 0.96997 * 117.94311 * 160.82353 * 18 17 16 33 33 H 1.09003 * 109.39703 * 222.10011 * 21 19 18 34 34 H 1.08996 * 109.33365 * 102.31120 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3718 -2.5804 -1.2490 12 6 -1.1420 -2.4691 -1.0561 13 6 -0.5131 -3.8181 -1.4109 14 6 2.2452 -3.6621 0.0005 15 1 1.7042 -4.6074 -0.0447 16 6 3.0955 -3.6144 1.2757 17 6 3.9508 -4.8804 1.3416 18 7 4.6638 -5.0754 0.0853 19 6 4.3200 -4.5077 -1.0683 20 8 4.9648 -4.7805 -2.0586 21 6 3.1776 -3.5429 -1.2075 22 1 -0.4849 0.8401 -0.0004 23 1 0.7976 -2.1445 -2.1527 24 1 -1.5115 -2.3385 -0.0390 25 1 -1.7123 -1.9599 -1.8330 26 1 -0.6696 -4.1962 -2.4212 27 1 -0.4685 -4.5746 -0.6274 28 1 2.4439 -3.5675 2.1482 29 1 3.7419 -2.7371 1.2516 30 1 4.6714 -4.7864 2.1540 31 1 3.3077 -5.7404 1.5281 32 1 5.4382 -5.6595 0.0881 33 1 2.6218 -3.7688 -2.1176 34 1 3.5683 -2.5270 -1.2645 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260663719.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:54 Heat of formation + Delta-G solvation = -31.282722 kcal Electronic energy + Delta-G solvation = -15941.979671 eV Core-core repulsion = 13453.676901 eV Total energy + Delta-G solvation = -2488.302770 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.82864 -37.23002 -35.57837 -33.20233 -32.05399 -29.10716 -27.55843 -24.24513 -23.15565 -21.43132 -20.72598 -18.91240 -18.62127 -16.98842 -16.18966 -15.37126 -15.00339 -14.51138 -14.16623 -13.79426 -13.35330 -13.08204 -12.86409 -12.34724 -11.79555 -11.23812 -11.17343 -10.95486 -10.79887 -10.59204 -10.45768 -10.36566 -9.81350 -9.55299 -9.45229 -9.23823 -8.75356 -8.58804 -8.51206 -8.23376 -5.99046 -4.05470 3.15353 3.29424 3.37079 3.39491 3.73352 4.42588 5.09726 5.22645 5.24836 5.32173 5.38427 5.55609 5.80052 5.92993 6.00715 6.18515 6.24209 6.37857 6.45472 6.50685 6.52874 6.80317 6.90002 6.95482 7.05057 7.12131 7.22048 7.32023 7.55870 7.74028 7.76763 7.96904 8.38073 8.66559 8.96419 9.59177 11.06644 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.023568 B = 0.010796 C = 0.008840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.788131 B = 2592.944670 C = 3166.712311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.069 3.931 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.082 3.918 10 H 0.031 0.969 11 C -0.086 4.086 12 C -0.135 4.135 13 C -0.231 4.231 14 C -0.074 4.074 15 H 0.052 0.948 16 C -0.124 4.124 17 C 0.109 3.891 18 N -0.723 5.723 19 C 0.520 3.480 20 O -0.579 6.579 21 C -0.123 4.123 22 H 0.257 0.743 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.388 0.612 33 H 0.091 0.909 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 -7.017 3.160 8.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.076 0.924 9 C 0.064 3.936 10 H 0.049 0.951 11 C -0.104 4.104 12 C -0.172 4.172 13 C -0.268 4.268 14 C -0.093 4.093 15 H 0.071 0.929 16 C -0.161 4.161 17 C -0.015 4.015 18 N -0.374 5.374 19 C 0.309 3.691 20 O -0.459 6.459 21 C -0.162 4.162 22 H 0.067 0.933 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.222 0.778 33 H 0.109 0.891 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.773 -6.864 2.666 7.869 hybrid contribution 0.610 0.816 0.046 1.020 sum 3.383 -6.048 2.712 7.442 Atomic orbital electron populations 1.70027 1.05632 1.26087 1.49265 1.24948 0.94755 0.98717 0.95021 0.86771 0.79970 0.84222 0.78063 1.20842 1.21453 1.20051 1.21052 0.92551 0.90137 1.51819 0.92391 1.18333 0.91388 0.91442 0.92421 0.95144 1.22281 0.92190 0.95409 1.00568 1.22396 0.97688 0.96147 1.01017 1.23070 1.11054 0.92556 1.00168 1.21242 0.96041 0.99964 0.92033 0.92942 1.21880 0.98566 0.95992 0.99711 1.21490 0.95717 0.99399 0.84876 1.45467 1.32739 1.49683 1.09472 1.20745 0.85779 0.80679 0.81903 1.90678 1.55073 1.63615 1.36540 1.21742 0.93949 0.99546 1.00972 0.93269 0.90138 0.89620 0.91465 0.91232 0.90589 0.90383 0.90319 0.91443 0.92430 0.77788 0.89052 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.13 11.30 55.43 0.63 -22.50 16 2 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 3 Si 0.88 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -12.59 7.05 -34.44 -0.24 -12.83 16 8 H 0.06 1.40 5.71 -52.49 -0.30 1.10 16 9 C 0.08 1.81 1.74 -91.77 -0.16 1.65 16 10 H 0.03 0.74 7.91 -51.93 -0.41 0.33 16 11 C -0.09 -1.87 3.37 -90.62 -0.31 -2.17 16 12 C -0.14 -2.87 8.88 -26.73 -0.24 -3.11 16 13 C -0.23 -4.38 9.73 -26.73 -0.26 -4.64 16 14 C -0.07 -1.34 1.94 -90.40 -0.18 -1.52 16 15 H 0.05 0.92 7.34 -51.93 -0.38 0.54 16 16 C -0.12 -1.95 4.94 -26.59 -0.13 -2.08 16 17 C 0.11 1.38 7.18 -4.48 -0.03 1.35 16 18 N -0.72 -10.55 5.43 -61.45 -0.33 -10.88 16 19 C 0.52 9.53 7.71 -11.99 -0.09 9.44 16 20 O -0.58 -12.49 17.78 5.56 0.10 -12.40 16 21 C -0.12 -2.30 4.82 -28.10 -0.14 -2.44 16 22 H 0.26 6.67 8.31 -40.82 -0.34 6.34 16 23 H 0.08 1.88 8.12 -51.93 -0.42 1.45 16 24 H 0.09 1.92 8.06 -51.93 -0.42 1.50 16 25 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.08 1.37 7.73 -51.93 -0.40 0.97 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.08 1.36 7.02 -51.93 -0.36 1.00 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.39 4.95 8.79 -40.82 -0.36 4.59 16 33 H 0.09 1.75 7.72 -51.93 -0.40 1.35 16 34 H 0.11 2.31 6.12 -51.93 -0.32 1.99 16 LS Contribution 271.57 15.07 4.09 4.09 Total: -1.00 -27.87 271.57 -7.43 -35.30 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.02 Total: 5.83 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -1.87 Total: -14.70 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.29 Total: -33.38 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.10 Total: -12.40 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.87 -7.43 -35.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260663719.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.017 kcal (2) G-P(sol) polarization free energy of solvation -27.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds