Wall clock time and date at job start Mon Mar 30 2020 03:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00115 * 2 1 4 4 H 1.48496 * 109.46817 * 269.99680 * 3 2 1 5 5 H 1.48498 * 109.47146 * 29.99816 * 3 2 1 6 6 H 1.48498 * 109.46918 * 149.99937 * 3 2 1 7 7 C 1.37881 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99689 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99934 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.47159 * 299.99456 * 9 7 2 11 11 C 1.52999 * 109.47334 * 59.99880 * 9 7 2 12 12 C 1.53005 * 117.49625 * 250.59607 * 11 9 7 13 13 C 1.53001 * 117.50070 * 181.97428 * 11 9 7 14 14 C 1.53007 * 109.46906 * 179.97438 * 9 7 2 15 15 H 1.09003 * 109.67195 * 182.52412 * 14 9 7 16 16 C 1.53342 * 109.67471 * 62.02486 * 14 9 7 17 17 C 1.52923 * 108.67634 * 172.73543 * 16 14 9 18 18 N 1.45758 * 110.31880 * 50.85480 * 17 16 14 19 19 C 1.33092 * 124.30749 * 340.59464 * 18 17 16 20 20 O 1.21282 * 118.32534 * 182.39972 * 19 18 17 21 21 C 1.50174 * 123.42741 * 2.61965 * 19 18 17 22 22 H 0.97001 * 119.99508 * 0.02562 * 1 2 3 23 23 H 1.09000 * 115.55225 * 36.30012 * 11 9 7 24 24 H 1.08997 * 117.49818 * 359.97438 * 12 11 9 25 25 H 1.08999 * 117.49869 * 145.02127 * 12 11 9 26 26 H 1.08999 * 117.50110 * 214.97991 * 13 11 9 27 27 H 1.09001 * 117.49421 * 359.97438 * 13 11 9 28 28 H 1.08998 * 109.60639 * 52.97436 * 16 14 9 29 29 H 1.09003 * 109.60082 * 292.49519 * 16 14 9 30 30 H 1.09000 * 109.30114 * 171.06173 * 17 16 14 31 31 H 1.08995 * 109.29960 * 290.64657 * 17 16 14 32 32 H 0.96997 * 117.94311 * 160.82353 * 18 17 16 33 33 H 1.09003 * 109.39703 * 222.10011 * 21 19 18 34 34 H 1.08996 * 109.33365 * 102.31120 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3718 -2.5804 -1.2490 12 6 -1.1420 -2.4691 -1.0561 13 6 -0.5131 -3.8181 -1.4109 14 6 2.2452 -3.6621 0.0005 15 1 1.7042 -4.6074 -0.0447 16 6 3.0955 -3.6144 1.2757 17 6 3.9508 -4.8804 1.3416 18 7 4.6638 -5.0754 0.0853 19 6 4.3200 -4.5077 -1.0683 20 8 4.9648 -4.7805 -2.0586 21 6 3.1776 -3.5429 -1.2075 22 1 -0.4849 0.8401 -0.0004 23 1 0.7976 -2.1445 -2.1527 24 1 -1.5115 -2.3385 -0.0390 25 1 -1.7123 -1.9599 -1.8330 26 1 -0.6696 -4.1962 -2.4212 27 1 -0.4685 -4.5746 -0.6274 28 1 2.4439 -3.5675 2.1482 29 1 3.7419 -2.7371 1.2516 30 1 4.6714 -4.7864 2.1540 31 1 3.3077 -5.7404 1.5281 32 1 5.4382 -5.6595 0.0881 33 1 2.6218 -3.7688 -2.1176 34 1 3.5683 -2.5270 -1.2645 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260663719.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:54 Heat of formation + Delta-G solvation = -48.207049 kcal Electronic energy + Delta-G solvation = -15942.713565 eV Core-core repulsion = 13453.676901 eV Total energy + Delta-G solvation = -2489.036664 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.24485 -38.85991 -37.01945 -34.82100 -33.80814 -30.43394 -29.28374 -25.96390 -24.54295 -23.02473 -22.29796 -20.54077 -20.14121 -18.43804 -17.79536 -16.79807 -16.59094 -16.21895 -15.84737 -15.15699 -14.88862 -14.58048 -14.40582 -13.93461 -13.40414 -12.88166 -12.80503 -12.59610 -12.49654 -12.14008 -12.10308 -11.99942 -11.55687 -11.19724 -11.08866 -10.80873 -10.43827 -10.25998 -9.98468 -9.94966 -7.95389 -6.04271 1.43150 1.48022 1.53141 1.71034 2.50416 2.50779 3.31823 3.45862 3.88687 4.07303 4.10016 4.15685 4.38402 4.55911 4.64712 4.70316 4.72357 4.85370 4.97506 5.05024 5.14872 5.21026 5.35202 5.40814 5.49515 5.57360 5.62822 5.77417 5.92842 5.98271 6.08459 6.41527 6.50135 7.05027 7.31620 7.61314 9.08739 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.023568 B = 0.010796 C = 0.008840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.788131 B = 2592.944670 C = 3166.712311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.085 3.915 10 H 0.007 0.993 11 C -0.104 4.104 12 C -0.145 4.145 13 C -0.195 4.195 14 C -0.067 4.067 15 H 0.066 0.934 16 C -0.123 4.123 17 C 0.113 3.887 18 N -0.707 5.707 19 C 0.521 3.479 20 O -0.617 6.617 21 C -0.117 4.117 22 H 0.253 0.747 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.402 0.598 33 H 0.082 0.918 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.596 -8.636 4.111 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.067 3.933 10 H 0.025 0.975 11 C -0.123 4.123 12 C -0.182 4.182 13 C -0.232 4.232 14 C -0.085 4.085 15 H 0.085 0.915 16 C -0.161 4.161 17 C -0.010 4.010 18 N -0.357 5.357 19 C 0.309 3.691 20 O -0.501 6.501 21 C -0.156 4.156 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.238 0.762 33 H 0.101 0.899 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.557 -8.499 3.662 9.914 hybrid contribution 0.360 1.319 -0.220 1.384 sum 3.917 -7.180 3.442 8.874 Atomic orbital electron populations 1.70138 1.06478 1.26114 1.50796 1.25529 0.95398 1.01169 0.95588 0.86000 0.79151 0.81532 0.77506 1.21410 1.21745 1.19460 1.21370 0.92683 0.91268 1.50047 0.92535 1.18226 0.91695 0.92012 0.91370 0.97496 1.22126 0.92398 0.98108 0.99672 1.22293 0.97308 0.98511 1.00100 1.23092 1.07034 0.91424 1.01675 1.21135 0.95498 0.98792 0.93111 0.91536 1.21833 0.98526 0.97191 0.98569 1.21649 0.96395 0.98410 0.84540 1.45367 1.32814 1.48510 1.08993 1.20520 0.85292 0.80725 0.82518 1.90664 1.56203 1.65049 1.38144 1.21582 0.94336 0.98724 1.00991 0.93796 0.92309 0.91216 0.91751 0.89322 0.88934 0.89615 0.92196 0.87941 0.89845 0.76188 0.89920 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.43 11.30 21.45 0.24 -48.19 16 2 C 0.02 1.21 5.30 84.66 0.45 1.66 16 3 Si 0.93 42.09 29.54 68.60 2.03 44.12 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.52 -25.28 7.05 25.60 0.18 -25.10 16 8 H 0.06 2.74 5.71 -2.91 -0.02 2.73 16 9 C 0.09 3.73 1.74 -11.54 -0.02 3.71 16 10 H 0.01 0.34 7.91 -2.39 -0.02 0.32 16 11 C -0.10 -4.54 3.37 -10.79 -0.04 -4.57 16 12 C -0.14 -6.15 8.88 30.60 0.27 -5.88 16 13 C -0.20 -7.04 9.73 30.60 0.30 -6.74 16 14 C -0.07 -2.32 1.94 -10.65 -0.02 -2.34 16 15 H 0.07 2.14 7.34 -2.39 -0.02 2.12 16 16 C -0.12 -3.60 4.94 30.68 0.15 -3.44 16 17 C 0.11 2.36 7.18 86.49 0.62 2.98 16 18 N -0.71 -18.35 5.43 -467.66 -2.54 -20.89 16 19 C 0.52 18.27 7.71 87.75 0.68 18.95 16 20 O -0.62 -26.11 17.78 -3.04 -0.05 -26.16 16 21 C -0.12 -4.31 4.82 29.71 0.14 -4.17 16 22 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 23 H 0.06 2.80 8.12 -2.39 -0.02 2.78 16 24 H 0.07 3.17 8.06 -2.39 -0.02 3.15 16 25 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.09 3.05 7.73 -2.39 -0.02 3.03 16 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.06 1.98 7.02 -2.39 -0.02 1.96 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.40 8.82 8.79 -92.71 -0.82 8.00 16 33 H 0.08 3.16 7.72 -2.39 -0.02 3.14 16 34 H 0.09 3.82 6.12 -2.39 -0.01 3.81 16 Total: -1.00 -60.31 271.57 2.67 -57.64 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.28 Total: 18.43 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 2.71 Total: -24.95 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: -2.30 Total: -69.08 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.05 Total: -26.16 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -60.31 2.67 -57.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260663719.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.436 kcal (2) G-P(sol) polarization free energy of solvation -60.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds