Wall clock time and date at job start Mon Mar 30 2020 02:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30593 * 1 3 3 Si 1.86808 * 120.00045 * 2 1 4 4 H 1.48498 * 109.46562 * 85.02184 * 3 2 1 5 5 H 1.48491 * 109.47141 * 205.01921 * 3 2 1 6 6 H 1.48496 * 109.47061 * 325.02599 * 3 2 1 7 7 C 1.40219 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99710 * 186.67702 * 7 2 1 9 9 C 1.41249 * 119.99809 * 6.67350 * 7 2 1 10 10 N 1.30637 * 123.22753 * 6.59298 * 9 7 2 11 11 C 1.47581 * 108.34045 * 179.33193 * 10 9 7 12 12 C 1.54790 * 102.10815 * 345.00874 * 11 10 9 13 13 H 1.08997 * 111.01937 * 265.61172 * 12 11 10 14 14 C 1.53002 * 111.02032 * 141.72311 * 12 11 10 15 15 C 1.53003 * 109.47051 * 300.00545 * 14 12 11 16 16 C 1.52997 * 109.46732 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47464 * 59.99594 * 16 15 14 18 18 C 1.53001 * 109.46964 * 299.99863 * 17 16 15 19 19 C 1.52994 * 109.47072 * 60.00319 * 18 17 16 20 20 O 1.35196 * 123.22571 * 186.29078 * 9 7 2 21 21 H 0.97007 * 120.00238 * 359.97438 * 1 2 3 22 22 H 1.09001 * 110.90693 * 103.20636 * 11 10 9 23 23 H 1.09005 * 110.90702 * 226.77321 * 11 10 9 24 24 H 1.09002 * 109.46622 * 60.00464 * 14 12 11 25 25 H 1.08999 * 109.46861 * 299.99608 * 15 14 12 26 26 H 1.08997 * 109.47004 * 59.99436 * 15 14 12 27 27 H 1.08999 * 109.47167 * 299.99469 * 16 15 14 28 28 H 1.09002 * 109.46992 * 180.02562 * 16 15 14 29 29 H 1.09001 * 109.47191 * 179.97438 * 17 16 15 30 30 H 1.08999 * 109.47031 * 59.99792 * 17 16 15 31 31 H 1.08999 * 109.47189 * 299.99832 * 18 17 16 32 32 H 1.09004 * 109.46920 * 179.97438 * 18 17 16 33 33 H 1.09002 * 109.46936 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.47510 * 59.99710 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 2.3822 2.1071 1.3948 5 1 3.5861 1.4121 -0.5921 6 1 1.4940 2.6201 -0.8025 7 6 2.0070 -1.2143 -0.0005 8 1 3.0816 -1.2175 0.1082 9 6 1.3080 -2.4334 -0.1432 10 7 0.0294 -2.4991 -0.4030 11 6 -0.3526 -3.9215 -0.4981 12 6 1.0231 -4.6192 -0.6276 13 1 1.2815 -4.7827 -1.6738 14 6 1.0470 -5.9347 0.1533 15 6 0.7766 -5.6544 1.6329 16 6 0.7999 -6.9699 2.4137 17 6 2.1723 -7.6290 2.2618 18 6 2.4426 -7.9092 0.7822 19 6 2.4194 -6.5937 0.0015 20 8 1.8991 -3.6440 -0.0299 21 1 -0.4851 0.8401 0.0004 22 1 -0.8699 -4.2465 0.4046 23 1 -0.9653 -4.1015 -1.3815 24 1 0.2786 -6.6024 -0.2364 25 1 1.5450 -4.9866 2.0225 26 1 -0.2013 -5.1853 1.7411 27 1 0.0313 -7.6374 2.0240 28 1 0.6069 -6.7704 3.4677 29 1 2.1890 -8.5660 2.8184 30 1 2.9410 -6.9615 2.6515 31 1 1.6739 -8.5766 0.3925 32 1 3.4205 -8.3783 0.6740 33 1 2.6124 -6.7933 -1.0526 34 1 3.1880 -5.9263 0.3911 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260663935.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:35 Heat of formation + Delta-G solvation = -43.980497 kcal Electronic energy + Delta-G solvation = -15719.058080 eV Core-core repulsion = 13230.204693 eV Total energy + Delta-G solvation = -2488.853387 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.71379 -37.58503 -33.53872 -31.83114 -31.11665 -30.44264 -27.96996 -25.27359 -22.80983 -22.04744 -20.47383 -20.09028 -18.95530 -16.68413 -15.61873 -15.13285 -15.07021 -14.11140 -13.90911 -13.86091 -13.52041 -12.85048 -12.27361 -12.20096 -11.94830 -11.74739 -11.27381 -11.23266 -10.95629 -10.85247 -10.82545 -10.42099 -10.36229 -10.16843 -9.93627 -9.71855 -9.61671 -9.05876 -7.73339 -7.28865 -6.40410 -4.57719 3.09703 3.18179 3.22923 4.04256 4.18519 4.84751 4.92329 4.95572 5.07398 5.39505 5.47541 5.49976 5.71326 5.75278 5.76239 5.79735 5.85748 5.95714 6.17717 6.19365 6.22141 6.35803 6.45071 6.50581 6.55198 6.59176 6.71487 6.87658 6.99354 7.02323 7.39635 7.87352 8.26970 8.84336 9.04482 10.18227 10.53363 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.048423 B = 0.006896 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.101966 B = 4059.572998 C = 4187.413283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.080 3.920 3 Si 0.915 3.085 4 H -0.271 1.271 5 H -0.262 1.262 6 H -0.277 1.277 7 C -0.455 4.455 8 H 0.082 0.918 9 C 0.378 3.622 10 N -0.603 5.603 11 C 0.005 3.995 12 C 0.051 3.949 13 H 0.062 0.938 14 C -0.073 4.073 15 C -0.113 4.113 16 C -0.117 4.117 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.113 4.113 20 O -0.365 6.365 21 H 0.272 0.728 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.718 -10.408 2.036 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.197 1.197 5 H -0.186 1.186 6 H -0.202 1.202 7 C -0.493 4.493 8 H 0.100 0.900 9 C 0.177 3.823 10 N -0.350 5.350 11 C -0.126 4.126 12 C -0.008 4.008 13 H 0.080 0.920 14 C -0.091 4.091 15 C -0.150 4.150 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.150 4.150 20 O -0.273 6.273 21 H 0.083 0.917 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.958 -9.944 1.985 10.328 hybrid contribution 0.674 0.012 -0.041 0.676 sum 2.633 -9.932 1.944 10.457 Atomic orbital electron populations 1.69997 1.07060 1.27675 1.31419 1.25723 0.94766 1.00382 0.93510 0.86209 0.80334 0.80751 0.78798 1.19687 1.18611 1.20211 1.18529 0.94334 0.86759 1.49683 0.89993 1.21989 0.88131 0.83724 0.88448 1.76172 1.10253 1.08293 1.40249 1.23862 0.95197 0.94324 0.99187 1.23725 0.92477 0.89364 0.95262 0.92046 1.21136 0.97238 0.94769 0.95980 1.21547 1.02618 0.96643 0.94229 1.21538 0.96865 0.97227 0.99841 1.21531 0.97796 0.99914 0.96379 1.21524 1.00841 0.97533 0.95518 1.21558 0.97802 0.96162 0.99494 1.86893 1.47252 1.17182 1.75970 0.91726 0.93253 0.92980 0.90921 0.91026 0.91771 0.92523 0.92398 0.92697 0.91971 0.92449 0.92477 0.92514 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.93 11.81 55.56 0.66 -20.28 16 2 C 0.08 2.16 5.49 -17.33 -0.10 2.06 16 3 Si 0.91 19.60 29.57 -169.99 -5.03 14.57 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.45 -12.95 9.50 -37.69 -0.36 -13.31 16 8 H 0.08 2.21 7.86 -52.49 -0.41 1.79 16 9 C 0.38 10.88 7.40 -16.92 -0.13 10.75 16 10 N -0.60 -17.56 9.78 -59.54 -0.58 -18.15 16 11 C 0.01 0.12 7.49 -2.51 -0.02 0.11 16 12 C 0.05 1.09 3.43 -25.79 -0.09 1.00 16 13 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 14 C -0.07 -1.24 2.15 -90.62 -0.19 -1.43 16 15 C -0.11 -1.94 4.76 -26.73 -0.13 -2.07 16 16 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 17 C -0.12 -1.48 5.92 -26.73 -0.16 -1.63 16 18 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 19 C -0.11 -1.71 5.14 -26.73 -0.14 -1.85 16 20 O -0.36 -9.35 9.78 -17.29 -0.17 -9.51 16 21 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 22 H 0.05 1.14 5.91 -51.93 -0.31 0.83 16 23 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.07 1.41 7.58 -51.93 -0.39 1.01 16 26 H 0.06 1.19 6.18 -51.93 -0.32 0.87 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.19 7.99 -51.93 -0.41 0.77 16 LS Contribution 270.62 15.07 4.08 4.08 Total: -1.00 -30.64 270.62 -7.87 -38.51 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.21 Total: 0.51 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.62 Total: -9.73 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.07 Total: -38.42 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.17 Total: -9.51 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.64 -7.87 -38.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260663935.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.472 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds