Wall clock time and date at job start Mon Mar 30 2020 02:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30593 * 1 3 3 Si 1.86808 * 120.00045 * 2 1 4 4 H 1.48498 * 109.46562 * 85.02184 * 3 2 1 5 5 H 1.48491 * 109.47141 * 205.01921 * 3 2 1 6 6 H 1.48496 * 109.47061 * 325.02599 * 3 2 1 7 7 C 1.40219 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99710 * 186.67702 * 7 2 1 9 9 C 1.41249 * 119.99809 * 6.67350 * 7 2 1 10 10 N 1.30637 * 123.22753 * 6.59298 * 9 7 2 11 11 C 1.47581 * 108.34045 * 179.33193 * 10 9 7 12 12 C 1.54790 * 102.10815 * 345.00874 * 11 10 9 13 13 H 1.08997 * 111.01937 * 265.61172 * 12 11 10 14 14 C 1.53002 * 111.02032 * 141.72311 * 12 11 10 15 15 C 1.53003 * 109.47051 * 300.00545 * 14 12 11 16 16 C 1.52997 * 109.46732 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47464 * 59.99594 * 16 15 14 18 18 C 1.53001 * 109.46964 * 299.99863 * 17 16 15 19 19 C 1.52994 * 109.47072 * 60.00319 * 18 17 16 20 20 O 1.35196 * 123.22571 * 186.29078 * 9 7 2 21 21 H 0.97007 * 120.00238 * 359.97438 * 1 2 3 22 22 H 1.09001 * 110.90693 * 103.20636 * 11 10 9 23 23 H 1.09005 * 110.90702 * 226.77321 * 11 10 9 24 24 H 1.09002 * 109.46622 * 60.00464 * 14 12 11 25 25 H 1.08999 * 109.46861 * 299.99608 * 15 14 12 26 26 H 1.08997 * 109.47004 * 59.99436 * 15 14 12 27 27 H 1.08999 * 109.47167 * 299.99469 * 16 15 14 28 28 H 1.09002 * 109.46992 * 180.02562 * 16 15 14 29 29 H 1.09001 * 109.47191 * 179.97438 * 17 16 15 30 30 H 1.08999 * 109.47031 * 59.99792 * 17 16 15 31 31 H 1.08999 * 109.47189 * 299.99832 * 18 17 16 32 32 H 1.09004 * 109.46920 * 179.97438 * 18 17 16 33 33 H 1.09002 * 109.46936 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.47510 * 59.99710 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2400 1.6178 0.0000 4 1 2.3822 2.1071 1.3948 5 1 3.5861 1.4121 -0.5921 6 1 1.4940 2.6201 -0.8025 7 6 2.0070 -1.2143 -0.0005 8 1 3.0816 -1.2175 0.1082 9 6 1.3080 -2.4334 -0.1432 10 7 0.0294 -2.4991 -0.4030 11 6 -0.3526 -3.9215 -0.4981 12 6 1.0231 -4.6192 -0.6276 13 1 1.2815 -4.7827 -1.6738 14 6 1.0470 -5.9347 0.1533 15 6 0.7766 -5.6544 1.6329 16 6 0.7999 -6.9699 2.4137 17 6 2.1723 -7.6290 2.2618 18 6 2.4426 -7.9092 0.7822 19 6 2.4194 -6.5937 0.0015 20 8 1.8991 -3.6440 -0.0299 21 1 -0.4851 0.8401 0.0004 22 1 -0.8699 -4.2465 0.4046 23 1 -0.9653 -4.1015 -1.3815 24 1 0.2786 -6.6024 -0.2364 25 1 1.5450 -4.9866 2.0225 26 1 -0.2013 -5.1853 1.7411 27 1 0.0313 -7.6374 2.0240 28 1 0.6069 -6.7704 3.4677 29 1 2.1890 -8.5660 2.8184 30 1 2.9410 -6.9615 2.6515 31 1 1.6739 -8.5766 0.3925 32 1 3.4205 -8.3783 0.6740 33 1 2.6124 -6.7933 -1.0526 34 1 3.1880 -5.9263 0.3911 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260663935.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:35 Heat of formation + Delta-G solvation = -65.324781 kcal Electronic energy + Delta-G solvation = -15719.983638 eV Core-core repulsion = 13230.204693 eV Total energy + Delta-G solvation = -2489.778945 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.53835 -38.96511 -35.57136 -33.52461 -32.92402 -31.65806 -29.82660 -27.12589 -24.33876 -23.34223 -22.39594 -21.54632 -20.39605 -18.73429 -17.44517 -17.00981 -16.57621 -15.66811 -15.42025 -15.04894 -14.90800 -14.36181 -14.19283 -13.85626 -13.44088 -13.13808 -12.97312 -12.91530 -12.48682 -12.29954 -12.24982 -12.04494 -11.96259 -11.81186 -11.36884 -11.12774 -10.94667 -10.87588 -9.80529 -9.37381 -8.44440 -6.76649 1.39551 1.42376 1.59305 2.14012 2.24345 3.06138 3.31675 3.69545 3.70861 3.87047 4.04561 4.19447 4.34651 4.45097 4.45783 4.57366 4.62970 4.64590 4.68174 4.75755 4.95911 4.97999 5.07322 5.18099 5.27124 5.29245 5.30007 5.32525 5.37585 5.45475 5.60163 5.89047 6.13270 6.73033 6.90220 8.08440 8.51840 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.048423 B = 0.006896 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.101966 B = 4059.572998 C = 4187.413283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.033 3.967 3 Si 1.002 2.998 4 H -0.259 1.259 5 H -0.254 1.254 6 H -0.266 1.266 7 C -0.491 4.491 8 H 0.086 0.914 9 C 0.358 3.642 10 N -0.647 5.647 11 C 0.002 3.998 12 C 0.050 3.950 13 H 0.066 0.934 14 C -0.066 4.066 15 C -0.110 4.110 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.110 4.110 19 C -0.110 4.110 20 O -0.376 6.376 21 H 0.281 0.719 22 H 0.053 0.947 23 H 0.062 0.938 24 H 0.099 0.901 25 H 0.035 0.965 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.383 -11.487 2.145 12.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.184 1.184 5 H -0.178 1.178 6 H -0.190 1.190 7 C -0.529 4.529 8 H 0.104 0.896 9 C 0.157 3.843 10 N -0.394 5.394 11 C -0.129 4.129 12 C -0.008 4.008 13 H 0.084 0.916 14 C -0.085 4.085 15 C -0.147 4.147 16 C -0.148 4.148 17 C -0.156 4.156 18 C -0.148 4.148 19 C -0.148 4.148 20 O -0.284 6.284 21 H 0.091 0.909 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.117 0.883 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.621 -11.059 2.096 11.557 hybrid contribution 0.406 0.297 -0.089 0.511 sum 3.027 -10.761 2.007 11.358 Atomic orbital electron populations 1.70103 1.09109 1.29448 1.31703 1.26859 0.95688 1.04215 0.91976 0.84928 0.78780 0.74790 0.79457 1.18398 1.17773 1.19041 1.19038 0.94935 0.87918 1.51025 0.89568 1.22306 0.88578 0.84822 0.88556 1.76061 1.10803 1.11677 1.40831 1.23881 0.96636 0.92605 0.99745 1.23983 0.90161 0.90377 0.96293 0.91627 1.21185 0.99488 0.92692 0.95110 1.21477 1.00064 0.98169 0.95031 1.21510 0.98448 0.95265 0.99603 1.21549 0.96377 1.00744 0.96903 1.21507 1.02599 0.95878 0.94781 1.21529 0.95435 0.97187 1.00619 1.86865 1.48133 1.17119 1.76315 0.90886 0.92881 0.92014 0.88302 0.94560 0.93823 0.90586 0.91796 0.89900 0.93341 0.90566 0.90709 0.91537 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -45.16 11.81 21.87 0.26 -44.90 16 2 C 0.03 1.79 5.49 85.36 0.47 2.26 16 3 Si 1.00 40.18 29.57 68.60 2.03 42.21 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 6 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.49 -28.80 9.50 23.49 0.22 -28.58 16 8 H 0.09 4.77 7.86 -2.91 -0.02 4.74 16 9 C 0.36 21.41 7.40 85.61 0.63 22.04 16 10 N -0.65 -38.96 9.78 -456.21 -4.46 -43.42 16 11 C 0.00 0.10 7.49 86.78 0.65 0.75 16 12 C 0.05 2.18 3.43 31.21 0.11 2.29 16 13 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 14 C -0.07 -2.20 2.15 -10.79 -0.02 -2.23 16 15 C -0.11 -3.79 4.76 30.59 0.15 -3.64 16 16 C -0.11 -2.78 5.92 30.59 0.18 -2.60 16 17 C -0.12 -2.61 5.92 30.59 0.18 -2.43 16 18 C -0.11 -2.37 5.92 30.59 0.18 -2.19 16 19 C -0.11 -3.18 5.14 30.59 0.16 -3.02 16 20 O -0.38 -19.99 9.78 -84.77 -0.83 -20.82 16 21 H 0.28 14.63 8.29 -92.70 -0.77 13.86 16 22 H 0.05 2.51 5.91 -2.39 -0.01 2.50 16 23 H 0.06 2.82 8.14 -2.38 -0.02 2.80 16 24 H 0.10 2.80 8.14 -2.39 -0.02 2.79 16 25 H 0.04 1.48 7.58 -2.39 -0.02 1.46 16 26 H 0.04 1.65 6.18 -2.39 -0.01 1.63 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.04 1.48 7.99 -2.39 -0.02 1.46 16 Total: -1.00 -68.66 270.62 0.97 -67.69 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 1.07 Total: 16.59 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 2.91 Total: -17.35 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -4.20 Total: -88.32 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.83 Total: -20.82 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -68.66 0.97 -67.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260663935.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.363 kcal (2) G-P(sol) polarization free energy of solvation -68.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds