Wall clock time and date at job start Mon Mar 30 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 N 1.33065 * 126.01230 * 60.02382 * 4 2 1 6 6 C 1.32815 * 108.65321 * 179.97438 * 5 4 2 7 7 C 1.39792 * 125.79925 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99952 * 0.02562 * 7 6 5 9 9 C 1.40338 * 120.00357 * 180.02562 * 7 6 5 10 10 N 1.30634 * 119.99433 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00442 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47001 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47464 * 119.99371 * 11 9 7 14 14 H 1.48500 * 109.47208 * 239.99523 * 11 9 7 15 15 O 1.34951 * 108.39825 * 0.02562 * 6 5 4 16 16 C 1.34597 * 107.61151 * 359.77273 * 15 6 5 17 17 C 1.50700 * 126.32149 * 180.22431 * 16 15 6 18 18 C 1.53001 * 109.46909 * 300.16448 * 17 16 15 19 19 C 1.53004 * 109.47073 * 60.15983 * 17 16 15 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 0.97000 * 119.99768 * 180.02562 * 10 9 7 28 28 H 1.08996 * 109.47041 * 180.16328 * 17 16 15 29 29 H 1.09000 * 109.47119 * 59.99635 * 18 17 16 30 30 H 1.08996 * 109.47099 * 179.97438 * 18 17 16 31 31 H 1.09002 * 109.47086 * 300.00158 * 18 17 16 32 32 H 1.09001 * 109.47057 * 60.00545 * 19 17 16 33 33 H 1.09006 * 109.47050 * 180.02562 * 19 17 16 34 34 H 1.08996 * 109.47469 * 300.00083 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7860 -0.3614 -2.4907 6 6 2.3957 -1.2229 -3.2969 7 6 2.3735 -1.1915 -4.6943 8 1 1.8252 -0.4159 -5.2084 9 6 3.0637 -2.1677 -5.4293 10 7 3.7273 -3.1055 -4.8075 11 14 3.0334 -2.1261 -7.2965 12 1 2.2167 -0.9728 -7.7528 13 1 4.4193 -1.9861 -7.8111 14 1 2.4397 -3.3866 -7.8102 15 8 3.0393 -2.1344 -2.5379 16 6 2.8206 -1.8178 -1.2481 17 6 3.3496 -2.5562 -0.0457 18 6 2.8445 -4.0002 -0.0711 19 6 4.8793 -2.5504 -0.0759 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 4.2046 -3.7801 -5.3154 28 1 3.0023 -2.0657 0.8636 29 1 3.1918 -4.4906 -0.9804 30 1 3.2274 -4.5344 0.7984 31 1 1.7547 -4.0043 -0.0496 32 1 5.2392 -1.5217 -0.0578 33 1 5.2619 -3.0849 0.7936 34 1 5.2266 -3.0409 -0.9852 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260668897.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:28 Heat of formation + Delta-G solvation = -26.234707 kcal Electronic energy + Delta-G solvation = -15747.694774 eV Core-core repulsion = 13259.610902 eV Total energy + Delta-G solvation = -2488.083872 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.00713 -35.43411 -34.56812 -33.49337 -31.64679 -28.52013 -26.61308 -26.49736 -25.60248 -21.99076 -21.36590 -19.17667 -18.74334 -17.28924 -15.35382 -14.68644 -14.52941 -14.17620 -13.91159 -13.50771 -13.12002 -12.53698 -12.41689 -12.36626 -11.62137 -11.59739 -11.51111 -11.33980 -11.15187 -10.67178 -10.66160 -10.62646 -10.59756 -10.29158 -10.07787 -9.96295 -9.53163 -9.07488 -8.38845 -7.19480 -6.87114 -4.58186 2.88242 3.04347 3.11469 3.37342 3.86790 4.18169 4.77350 5.31911 5.47400 5.50674 5.54687 5.76498 5.77602 5.90602 6.08408 6.12315 6.13403 6.24184 6.32812 6.41263 6.43426 6.46168 6.47016 6.78976 6.82178 6.83609 6.87116 6.92568 7.06092 7.21526 7.82861 8.03855 8.27773 8.59061 8.77465 9.94345 10.16360 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.026797 B = 0.009666 C = 0.007822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.647915 B = 2895.963833 C = 3578.943115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.009 4.009 3 C -0.133 4.133 4 C 0.024 3.976 5 N -0.605 5.605 6 C 0.345 3.655 7 C -0.432 4.432 8 H 0.108 0.892 9 C 0.070 3.930 10 N -0.777 5.777 11 Si 0.928 3.072 12 H -0.257 1.257 13 H -0.272 1.272 14 H -0.272 1.272 15 O -0.177 6.177 16 C -0.179 4.179 17 C 0.015 3.985 18 C -0.141 4.141 19 C -0.141 4.141 20 H 0.061 0.939 21 H 0.044 0.956 22 H 0.047 0.953 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.283 0.717 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.095 0.160 6.204 6.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.028 4.028 3 C -0.191 4.191 4 C -0.101 4.101 5 N -0.338 5.338 6 C 0.160 3.840 7 C -0.467 4.467 8 H 0.126 0.874 9 C -0.151 4.151 10 N -0.405 5.405 11 Si 0.751 3.249 12 H -0.181 1.181 13 H -0.197 1.197 14 H -0.197 1.197 15 O -0.069 6.069 16 C -0.235 4.235 17 C -0.004 4.004 18 C -0.199 4.199 19 C -0.198 4.198 20 H 0.080 0.920 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.318 0.473 5.943 5.970 hybrid contribution 0.505 -0.717 -0.621 1.075 sum 0.188 -0.244 5.322 5.331 Atomic orbital electron populations 1.21700 0.95165 1.01209 1.01030 1.19322 0.95171 0.95004 0.93281 1.21699 1.00524 0.95853 1.01030 1.20948 1.00004 0.95520 0.93676 1.70744 1.32474 1.31203 0.99378 1.22012 0.86971 0.81954 0.93054 1.18374 1.30158 1.12469 0.85702 0.87419 1.26075 0.93010 0.93793 1.02262 1.69726 1.21954 1.10309 1.38509 0.85928 0.79008 0.79435 0.80492 1.18071 1.19680 1.19684 1.84765 1.60452 1.47761 1.13927 1.22402 1.12740 1.03323 0.85025 1.19144 0.94649 0.94363 0.92215 1.21813 1.00731 0.96074 1.01233 1.21814 0.95499 1.01299 1.01233 0.92030 0.93659 0.93369 0.91556 0.93668 0.93372 0.92024 0.90575 0.90611 0.92201 0.93504 0.93141 0.93140 0.93502 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 9.18 37.16 0.34 -1.99 16 2 C -0.01 -0.17 3.29 -91.78 -0.30 -0.47 16 3 C -0.13 -2.33 9.17 37.15 0.34 -1.99 16 4 C 0.02 0.57 5.61 -82.88 -0.47 0.11 16 5 N -0.60 -16.71 11.34 -9.64 -0.11 -16.82 16 6 C 0.35 10.04 7.66 -16.55 -0.13 9.92 16 7 C -0.43 -12.00 9.45 -38.21 -0.36 -12.36 16 8 H 0.11 2.88 7.85 -52.48 -0.41 2.47 16 9 C 0.07 1.81 5.50 -17.27 -0.10 1.71 16 10 N -0.78 -20.69 11.98 55.57 0.67 -20.03 16 11 Si 0.93 18.80 29.56 -169.99 -5.03 13.77 16 12 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 13 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 14 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 15 O -0.18 -5.04 9.06 3.09 0.03 -5.01 16 16 C -0.18 -4.38 5.93 -35.13 -0.21 -4.59 16 17 C 0.02 0.29 3.29 -91.77 -0.30 -0.01 16 18 C -0.14 -2.52 9.18 37.16 0.34 -2.18 16 19 C -0.14 -2.52 9.18 37.16 0.34 -2.18 16 20 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.07 1.14 6.42 -51.93 -0.33 0.81 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.28 6.76 8.29 -40.82 -0.34 6.42 16 28 H 0.08 1.30 6.42 -51.93 -0.33 0.97 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 287.38 15.07 4.33 4.33 Total: -1.00 -30.12 287.38 -5.89 -36.01 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.29 Total: 1.78 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -0.50 Total: -14.03 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.56 Total: -36.84 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: 0.03 Total: -5.01 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.12 -5.89 -36.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668897.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.775 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds