Wall clock time and date at job start Mon Mar 30 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 N 1.33065 * 126.01230 * 60.02382 * 4 2 1 6 6 C 1.32815 * 108.65321 * 179.97438 * 5 4 2 7 7 C 1.39792 * 125.79925 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99952 * 0.02562 * 7 6 5 9 9 C 1.40338 * 120.00357 * 180.02562 * 7 6 5 10 10 N 1.30634 * 119.99433 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00442 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47001 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47464 * 119.99371 * 11 9 7 14 14 H 1.48500 * 109.47208 * 239.99523 * 11 9 7 15 15 O 1.34951 * 108.39825 * 0.02562 * 6 5 4 16 16 C 1.34597 * 107.61151 * 359.77273 * 15 6 5 17 17 C 1.50700 * 126.32149 * 180.22431 * 16 15 6 18 18 C 1.53001 * 109.46909 * 300.16448 * 17 16 15 19 19 C 1.53004 * 109.47073 * 60.15983 * 17 16 15 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 0.97000 * 119.99768 * 180.02562 * 10 9 7 28 28 H 1.08996 * 109.47041 * 180.16328 * 17 16 15 29 29 H 1.09000 * 109.47119 * 59.99635 * 18 17 16 30 30 H 1.08996 * 109.47099 * 179.97438 * 18 17 16 31 31 H 1.09002 * 109.47086 * 300.00158 * 18 17 16 32 32 H 1.09001 * 109.47057 * 60.00545 * 19 17 16 33 33 H 1.09006 * 109.47050 * 180.02562 * 19 17 16 34 34 H 1.08996 * 109.47469 * 300.00083 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7860 -0.3614 -2.4907 6 6 2.3957 -1.2229 -3.2969 7 6 2.3735 -1.1915 -4.6943 8 1 1.8252 -0.4159 -5.2084 9 6 3.0637 -2.1677 -5.4293 10 7 3.7273 -3.1055 -4.8075 11 14 3.0334 -2.1261 -7.2965 12 1 2.2167 -0.9728 -7.7528 13 1 4.4193 -1.9861 -7.8111 14 1 2.4397 -3.3866 -7.8102 15 8 3.0393 -2.1344 -2.5379 16 6 2.8206 -1.8178 -1.2481 17 6 3.3496 -2.5562 -0.0457 18 6 2.8445 -4.0002 -0.0711 19 6 4.8793 -2.5504 -0.0759 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 4.2046 -3.7801 -5.3154 28 1 3.0023 -2.0657 0.8636 29 1 3.1918 -4.4906 -0.9804 30 1 3.2274 -4.5344 0.7984 31 1 1.7547 -4.0043 -0.0496 32 1 5.2392 -1.5217 -0.0578 33 1 5.2619 -3.0849 0.7936 34 1 5.2266 -3.0409 -0.9852 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260668897.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:28 Heat of formation + Delta-G solvation = -46.300300 kcal Electronic energy + Delta-G solvation = -15748.564884 eV Core-core repulsion = 13259.610902 eV Total energy + Delta-G solvation = -2488.953981 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.99626 -37.08478 -36.17687 -35.42919 -33.55637 -30.47114 -28.03594 -27.90644 -27.48971 -23.65478 -23.24581 -20.93426 -20.60440 -19.19908 -17.24005 -16.53630 -16.35375 -15.78863 -15.58759 -14.96413 -14.80845 -14.05069 -14.00111 -13.91302 -13.32202 -13.06766 -13.05887 -13.00907 -12.94496 -12.29011 -12.13032 -12.12728 -12.07335 -11.92122 -11.77571 -11.47292 -11.42456 -11.03569 -10.40243 -9.15886 -8.80911 -6.63922 1.13819 1.36620 1.55731 1.57472 2.16320 2.26894 2.92466 3.25801 3.90777 4.01227 4.05055 4.24239 4.29683 4.42375 4.56251 4.72750 4.78236 4.79857 4.84620 4.95820 4.96268 5.01799 5.06359 5.07283 5.18530 5.27158 5.37584 5.38655 5.44426 5.56095 5.94325 6.08578 6.24070 6.58560 6.72423 7.92523 8.24323 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.026797 B = 0.009666 C = 0.007822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.647915 B = 2895.963833 C = 3578.943115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.012 4.012 3 C -0.127 4.127 4 C 0.007 3.993 5 N -0.628 5.628 6 C 0.306 3.694 7 C -0.467 4.467 8 H 0.105 0.895 9 C 0.028 3.972 10 N -0.812 5.812 11 Si 1.011 2.989 12 H -0.253 1.253 13 H -0.259 1.259 14 H -0.259 1.259 15 O -0.203 6.203 16 C -0.195 4.195 17 C 0.012 3.988 18 C -0.134 4.134 19 C -0.134 4.134 20 H 0.035 0.965 21 H 0.086 0.914 22 H 0.040 0.960 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.040 0.960 26 H 0.035 0.965 27 H 0.294 0.706 28 H 0.106 0.894 29 H 0.028 0.972 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.014 0.014 7.546 7.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.030 4.030 3 C -0.184 4.184 4 C -0.117 4.117 5 N -0.363 5.363 6 C 0.120 3.880 7 C -0.502 4.502 8 H 0.123 0.877 9 C -0.190 4.190 10 N -0.440 5.440 11 Si 0.828 3.172 12 H -0.176 1.176 13 H -0.183 1.183 14 H -0.183 1.183 15 O -0.095 6.095 16 C -0.250 4.250 17 C -0.007 4.007 18 C -0.191 4.191 19 C -0.191 4.191 20 H 0.055 0.945 21 H 0.105 0.895 22 H 0.059 0.941 23 H 0.112 0.888 24 H 0.105 0.895 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.105 0.895 28 H 0.124 0.876 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.205 0.322 7.326 7.336 hybrid contribution 0.470 -0.670 -0.926 1.236 sum 0.265 -0.348 6.400 6.415 Atomic orbital electron populations 1.21646 0.93955 1.01019 1.01813 1.19571 0.96205 0.95630 0.91637 1.21644 1.00046 0.94933 1.01812 1.21801 0.99793 0.95910 0.94237 1.70720 1.32973 1.31520 1.01062 1.22556 0.88301 0.82963 0.94140 1.18721 1.31705 1.13782 0.85997 0.87690 1.27136 0.91609 0.92456 1.07839 1.69788 1.22241 1.10937 1.41052 0.84738 0.79614 0.79882 0.72917 1.17639 1.18331 1.18345 1.84724 1.60825 1.48172 1.15759 1.23538 1.12434 1.03925 0.85063 1.19452 0.95515 0.94871 0.90831 1.21747 1.00446 0.95310 1.01624 1.21748 0.94467 1.01281 1.01626 0.94542 0.89492 0.94069 0.88836 0.89501 0.94065 0.94537 0.89489 0.87566 0.95249 0.89241 0.93631 0.93630 0.89238 0.95250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 9.18 71.98 0.66 -3.56 16 2 C -0.01 -0.42 3.29 -11.54 -0.04 -0.46 16 3 C -0.13 -4.22 9.17 71.98 0.66 -3.56 16 4 C 0.01 0.33 5.61 41.84 0.23 0.56 16 5 N -0.63 -36.14 11.34 -297.40 -3.37 -39.52 16 6 C 0.31 18.68 7.66 84.92 0.65 19.33 16 7 C -0.47 -27.16 9.45 23.16 0.22 -26.94 16 8 H 0.11 5.90 7.85 -2.91 -0.02 5.88 16 9 C 0.03 1.47 5.50 85.38 0.47 1.93 16 10 N -0.81 -44.53 11.98 21.89 0.26 -44.27 16 11 Si 1.01 38.80 29.56 68.60 2.03 40.83 16 12 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 13 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 14 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 15 O -0.20 -12.04 9.06 -11.85 -0.11 -12.15 16 16 C -0.19 -9.70 5.93 25.15 0.15 -9.55 16 17 C 0.01 0.44 3.29 -11.54 -0.04 0.40 16 18 C -0.13 -4.58 9.18 71.98 0.66 -3.92 16 19 C -0.13 -4.58 9.18 71.98 0.66 -3.92 16 20 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 22 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 23 H 0.09 2.89 6.42 -2.39 -0.02 2.87 16 24 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.29 14.29 8.29 -92.71 -0.77 13.52 16 28 H 0.11 3.28 6.42 -2.39 -0.02 3.26 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -69.85 287.38 4.16 -65.69 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 1.07 Total: 19.09 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 4.29 Total: -29.68 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -3.11 Total: -83.78 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.11 Total: -12.15 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -69.85 4.16 -65.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668897.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.389 kcal (2) G-P(sol) polarization free energy of solvation -69.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds