Wall clock time and date at job start Mon Mar 30 2020 03:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40887 * 126.29033 * 2 1 4 4 C 1.34853 * 107.41451 * 180.12382 * 3 2 1 5 5 C 1.50702 * 125.88818 * 179.88735 * 4 3 2 6 6 N 1.36338 * 108.22038 * 359.62296 * 4 3 2 7 7 C 1.46496 * 125.63638 * 180.25924 * 6 4 3 8 8 C 1.34847 * 126.29101 * 179.69847 * 2 1 3 9 9 C 1.50700 * 125.89275 * 0.05945 * 8 2 1 10 10 H 1.09003 * 109.46955 * 345.85427 * 9 8 2 11 11 O 1.42894 * 109.47686 * 225.85141 * 9 8 2 12 12 C 1.53008 * 109.47102 * 105.85058 * 9 8 2 13 13 C 1.50697 * 109.47077 * 185.00228 * 12 9 8 14 14 H 1.08001 * 120.00343 * 0.02562 * 13 12 9 15 15 C 1.37881 * 120.00023 * 180.02562 * 13 12 9 16 16 N 1.31508 * 120.00033 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99713 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47193 * 90.00044 * 17 15 13 19 19 H 1.48504 * 109.47034 * 210.00029 * 17 15 13 20 20 H 1.48504 * 109.47145 * 329.99881 * 17 15 13 21 21 H 1.08998 * 109.47170 * 265.08239 * 1 2 3 22 22 H 1.09001 * 109.46742 * 25.08576 * 1 2 3 23 23 H 1.09005 * 109.46937 * 145.07927 * 1 2 3 24 24 H 1.07999 * 126.29651 * 359.97438 * 3 2 1 25 25 H 1.08996 * 109.47066 * 269.69268 * 5 4 3 26 26 H 1.09002 * 109.47214 * 149.69143 * 5 4 3 27 27 H 1.09003 * 109.47334 * 29.69229 * 5 4 3 28 28 H 1.09006 * 109.46855 * 89.97702 * 7 6 4 29 29 H 1.09005 * 109.47030 * 209.97566 * 7 6 4 30 30 H 1.08998 * 109.47503 * 329.97763 * 7 6 4 31 31 H 0.96704 * 114.00075 * 293.52159 * 11 9 8 32 32 H 1.09000 * 109.47064 * 305.00254 * 12 9 8 33 33 H 1.08999 * 109.47159 * 65.00211 * 12 9 8 34 34 H 0.97006 * 120.00007 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.1356 0.0000 4 6 3.6169 0.6993 -0.0028 5 6 4.8478 1.5688 -0.0062 6 7 3.6013 -0.6640 0.0040 7 6 4.7821 -1.5310 0.0091 8 6 2.3052 -1.0869 0.0057 9 6 1.8441 -2.5216 0.0120 10 1 0.7840 -2.5614 0.2625 11 8 2.5908 -3.2578 0.9827 12 6 2.0643 -3.1342 -1.3727 13 6 1.4918 -4.5278 -1.4023 14 1 1.0179 -4.9358 -0.5217 15 6 1.5730 -5.2822 -2.5535 16 7 1.0730 -6.4983 -2.5795 17 14 2.3921 -4.5764 -4.0768 18 1 3.8405 -4.9035 -4.0567 19 1 1.7691 -5.1627 -5.2906 20 1 2.2179 -3.1017 -4.0942 21 1 -0.3633 -0.0881 1.0239 22 1 -0.3633 0.9308 -0.4357 23 1 -0.3633 -0.8427 -0.5883 24 1 2.0177 2.1661 -0.0004 25 1 5.1453 1.7733 -1.0347 26 1 5.6577 1.0541 0.5108 27 1 4.6307 2.5079 0.5028 28 1 5.0745 -1.7406 1.0381 29 1 4.5484 -2.4662 -0.4998 30 1 5.6020 -1.0315 -0.5070 31 1 3.5298 -3.3491 0.7701 32 1 1.5671 -2.5211 -2.1244 33 1 3.1324 -3.1755 -1.5860 34 1 1.1305 -7.0292 -3.3894 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260674636.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:19 Heat of formation + Delta-G solvation = -17.513193 kcal Electronic energy + Delta-G solvation = -15666.438518 eV Core-core repulsion = 13178.732840 eV Total energy + Delta-G solvation = -2487.705679 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.14530 -36.63978 -33.52663 -32.80642 -31.69400 -29.98463 -28.68153 -26.66803 -24.94811 -23.16660 -20.88737 -19.69856 -18.52539 -16.87115 -16.20795 -15.31897 -15.09193 -14.53639 -14.00567 -13.88576 -13.15825 -12.95640 -12.83059 -12.77473 -12.50719 -12.39295 -12.35412 -11.70165 -11.49847 -11.41567 -11.08438 -10.94964 -10.62730 -10.42821 -9.84516 -9.23187 -9.20461 -8.59927 -8.08657 -7.35631 -6.08070 -4.06591 2.53754 3.22741 3.23558 3.29098 3.33319 3.37001 4.39522 4.91400 5.01874 5.10985 5.22782 5.24362 5.33558 5.38767 5.56675 5.58739 5.70637 5.78098 5.86794 6.04249 6.10675 6.15097 6.35090 6.43572 6.60273 6.83909 6.98780 7.14117 7.45711 7.62964 7.65877 7.76262 8.26210 8.48840 9.00530 9.52898 11.05057 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.030191 B = 0.008617 C = 0.008148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.190942 B = 3248.494003 C = 3435.669607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.170 4.170 3 C -0.195 4.195 4 C -0.002 4.002 5 C -0.077 4.077 6 N -0.438 5.438 7 C 0.060 3.940 8 C 0.007 3.993 9 C 0.184 3.816 10 H 0.113 0.887 11 O -0.553 6.553 12 C -0.036 4.036 13 C -0.515 4.515 14 H 0.079 0.921 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.873 3.127 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.266 1.266 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.129 0.871 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.359 0.641 32 H 0.029 0.971 33 H 0.009 0.991 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.898 14.083 4.046 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.176 4.176 3 C -0.220 4.220 4 C -0.113 4.113 5 C -0.135 4.135 6 N -0.115 5.115 7 C -0.081 4.081 8 C -0.105 4.105 9 C 0.124 3.876 10 H 0.131 0.869 11 O -0.358 6.358 12 C -0.074 4.074 13 C -0.553 4.553 14 H 0.098 0.902 15 C -0.132 4.132 16 N -0.537 5.537 17 Si 0.701 3.299 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.191 1.191 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.147 0.853 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.206 0.794 32 H 0.048 0.952 33 H 0.027 0.973 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.593 13.659 4.218 15.742 hybrid contribution 1.076 0.320 -1.292 1.712 sum 7.668 13.978 2.926 16.210 Atomic orbital electron populations 1.20119 0.90450 1.01781 1.01183 1.19227 0.95339 0.91841 1.11181 1.20463 0.91321 0.97911 1.12277 1.20207 0.96547 0.82585 1.11921 1.20208 0.93346 0.97962 1.01952 1.43644 1.05637 1.05252 1.56968 1.22155 0.87180 0.95686 1.03112 1.21462 0.82570 0.97814 1.08631 1.20570 0.95801 0.80821 0.90405 0.86926 1.86589 1.23940 1.76492 1.48729 1.20270 0.96573 0.97803 0.92730 1.21019 1.37892 0.96644 0.99731 0.90249 1.24990 0.95109 0.94682 0.98434 1.69903 1.45912 1.09479 1.28448 0.86880 0.79780 0.79996 0.83266 1.20418 1.21151 1.19059 0.92489 0.92527 0.91766 0.85311 0.91676 0.92293 0.90674 0.90808 0.89095 0.90123 0.79415 0.95245 0.97289 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 9.82 36.01 0.35 -0.86 16 2 C -0.17 -3.05 6.14 -104.82 -0.64 -3.69 16 3 C -0.19 -3.14 10.71 -39.78 -0.43 -3.57 16 4 C 0.00 -0.03 6.89 -81.79 -0.56 -0.59 16 5 C -0.08 -0.83 9.88 36.01 0.36 -0.47 16 6 N -0.44 -7.24 3.15 -115.30 -0.36 -7.61 16 7 C 0.06 0.79 9.16 59.84 0.55 1.34 16 8 C 0.01 0.13 5.84 -81.79 -0.48 -0.34 16 9 C 0.18 3.86 2.97 -27.88 -0.08 3.78 16 10 H 0.11 2.44 7.22 -51.93 -0.38 2.06 16 11 O -0.55 -11.52 13.00 -35.23 -0.46 -11.98 16 12 C -0.04 -0.86 3.59 -27.88 -0.10 -0.96 16 13 C -0.51 -14.58 9.43 -34.44 -0.32 -14.91 16 14 H 0.08 2.46 7.99 -52.49 -0.42 2.05 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 17 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 1.05 7.66 -51.93 -0.40 0.65 16 24 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.56 7.70 -51.93 -0.40 0.16 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 29 H 0.09 1.29 4.91 -51.93 -0.25 1.03 16 30 H 0.08 0.85 7.63 -51.93 -0.40 0.45 16 31 H 0.36 6.35 6.04 45.56 0.28 6.63 16 32 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 33 H 0.01 0.21 5.84 -51.93 -0.30 -0.10 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 277.45 15.07 4.18 4.18 Total: -1.00 -32.80 277.45 -6.34 -39.14 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.35 Total: 4.58 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -1.46 Total: -18.37 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.41 Total: -34.42 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.46 Total: -11.98 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.80 -6.34 -39.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260674636.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.624 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds