Wall clock time and date at job start Mon Mar 30 2020 03:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40887 * 126.29033 * 2 1 4 4 C 1.34853 * 107.41451 * 180.12382 * 3 2 1 5 5 C 1.50702 * 125.88818 * 179.88735 * 4 3 2 6 6 N 1.36338 * 108.22038 * 359.62296 * 4 3 2 7 7 C 1.46496 * 125.63638 * 180.25924 * 6 4 3 8 8 C 1.34847 * 126.29101 * 179.69847 * 2 1 3 9 9 C 1.50700 * 125.89275 * 0.05945 * 8 2 1 10 10 H 1.09003 * 109.46955 * 345.85427 * 9 8 2 11 11 O 1.42894 * 109.47686 * 225.85141 * 9 8 2 12 12 C 1.53008 * 109.47102 * 105.85058 * 9 8 2 13 13 C 1.50697 * 109.47077 * 185.00228 * 12 9 8 14 14 H 1.08001 * 120.00343 * 0.02562 * 13 12 9 15 15 C 1.37881 * 120.00023 * 180.02562 * 13 12 9 16 16 N 1.31508 * 120.00033 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99713 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47193 * 90.00044 * 17 15 13 19 19 H 1.48504 * 109.47034 * 210.00029 * 17 15 13 20 20 H 1.48504 * 109.47145 * 329.99881 * 17 15 13 21 21 H 1.08998 * 109.47170 * 265.08239 * 1 2 3 22 22 H 1.09001 * 109.46742 * 25.08576 * 1 2 3 23 23 H 1.09005 * 109.46937 * 145.07927 * 1 2 3 24 24 H 1.07999 * 126.29651 * 359.97438 * 3 2 1 25 25 H 1.08996 * 109.47066 * 269.69268 * 5 4 3 26 26 H 1.09002 * 109.47214 * 149.69143 * 5 4 3 27 27 H 1.09003 * 109.47334 * 29.69229 * 5 4 3 28 28 H 1.09006 * 109.46855 * 89.97702 * 7 6 4 29 29 H 1.09005 * 109.47030 * 209.97566 * 7 6 4 30 30 H 1.08998 * 109.47503 * 329.97763 * 7 6 4 31 31 H 0.96704 * 114.00075 * 293.52159 * 11 9 8 32 32 H 1.09000 * 109.47064 * 305.00254 * 12 9 8 33 33 H 1.08999 * 109.47159 * 65.00211 * 12 9 8 34 34 H 0.97006 * 120.00007 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.1356 0.0000 4 6 3.6169 0.6993 -0.0028 5 6 4.8478 1.5688 -0.0062 6 7 3.6013 -0.6640 0.0040 7 6 4.7821 -1.5310 0.0091 8 6 2.3052 -1.0869 0.0057 9 6 1.8441 -2.5216 0.0120 10 1 0.7840 -2.5614 0.2625 11 8 2.5908 -3.2578 0.9827 12 6 2.0643 -3.1342 -1.3727 13 6 1.4918 -4.5278 -1.4023 14 1 1.0179 -4.9358 -0.5217 15 6 1.5730 -5.2822 -2.5535 16 7 1.0730 -6.4983 -2.5795 17 14 2.3921 -4.5764 -4.0768 18 1 3.8405 -4.9035 -4.0567 19 1 1.7691 -5.1627 -5.2906 20 1 2.2179 -3.1017 -4.0942 21 1 -0.3633 -0.0881 1.0239 22 1 -0.3633 0.9308 -0.4357 23 1 -0.3633 -0.8427 -0.5883 24 1 2.0177 2.1661 -0.0004 25 1 5.1453 1.7733 -1.0347 26 1 5.6577 1.0541 0.5108 27 1 4.6307 2.5079 0.5028 28 1 5.0745 -1.7406 1.0381 29 1 4.5484 -2.4662 -0.4998 30 1 5.6020 -1.0315 -0.5070 31 1 3.5298 -3.3491 0.7701 32 1 1.5671 -2.5211 -2.1244 33 1 3.1324 -3.1755 -1.5860 34 1 1.1305 -7.0292 -3.3894 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260674636.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:19 Heat of formation + Delta-G solvation = -39.885213 kcal Electronic energy + Delta-G solvation = -15667.408642 eV Core-core repulsion = 13178.732840 eV Total energy + Delta-G solvation = -2488.675802 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.38838 -38.29211 -35.02845 -34.65318 -32.96224 -31.73292 -29.79768 -28.18246 -26.23261 -24.72585 -22.69520 -20.91595 -19.88371 -18.85388 -17.73956 -16.87609 -16.34123 -16.10297 -15.96267 -15.26921 -14.58372 -14.21752 -14.12230 -13.97558 -13.83298 -13.67832 -13.41544 -13.27331 -12.93092 -12.75275 -12.67345 -12.44581 -12.18237 -12.13553 -11.81634 -11.33418 -10.88247 -10.81976 -9.28850 -8.65013 -8.32009 -6.36780 1.27908 1.29092 1.33624 1.44471 2.02469 2.09184 2.30893 3.00639 3.60879 3.81723 3.91528 4.05802 4.23764 4.35773 4.47447 4.49647 4.57082 4.60838 4.72789 4.83343 4.88673 4.93201 5.02855 5.11473 5.19991 5.22872 5.43682 5.53491 5.64708 6.20313 6.23523 6.35052 6.57713 6.70383 6.74281 7.26612 8.84768 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.030191 B = 0.008617 C = 0.008148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.190942 B = 3248.494003 C = 3435.669607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.181 4.181 3 C -0.217 4.217 4 C 0.010 3.990 5 C -0.075 4.075 6 N -0.443 5.443 7 C 0.052 3.948 8 C -0.031 4.031 9 C 0.195 3.805 10 H 0.093 0.907 11 O -0.567 6.567 12 C -0.025 4.025 13 C -0.524 4.524 14 H 0.033 0.967 15 C 0.010 3.990 16 N -0.947 5.947 17 Si 0.947 3.053 18 H -0.261 1.261 19 H -0.282 1.282 20 H -0.255 1.255 21 H 0.063 0.937 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.150 0.850 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.372 0.628 32 H 0.023 0.977 33 H 0.024 0.976 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.127 16.625 3.329 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.188 4.188 3 C -0.241 4.241 4 C -0.102 4.102 5 C -0.133 4.133 6 N -0.120 5.120 7 C -0.089 4.089 8 C -0.142 4.142 9 C 0.136 3.864 10 H 0.111 0.889 11 O -0.373 6.373 12 C -0.062 4.062 13 C -0.562 4.562 14 H 0.052 0.948 15 C -0.187 4.187 16 N -0.587 5.587 17 Si 0.770 3.230 18 H -0.186 1.186 19 H -0.208 1.208 20 H -0.179 1.179 21 H 0.082 0.918 22 H 0.096 0.904 23 H 0.066 0.934 24 H 0.168 0.832 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.129 0.871 31 H 0.221 0.779 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.839 16.201 3.517 18.788 hybrid contribution 0.365 -0.476 -0.970 1.140 sum 9.205 15.725 2.547 18.398 Atomic orbital electron populations 1.20154 0.89771 1.02136 1.01517 1.19660 0.96329 0.92502 1.10266 1.20787 0.91582 0.98421 1.13332 1.20979 0.98054 0.82326 1.08868 1.20365 0.91669 0.97917 1.03321 1.43882 1.05433 1.06226 1.56419 1.22387 0.86853 0.95020 1.04592 1.21024 0.84426 0.96394 1.12403 1.20146 0.95142 0.82559 0.88588 0.88902 1.86545 1.25097 1.76878 1.48826 1.20116 0.96719 0.94899 0.94513 1.21232 1.37689 0.98919 0.98326 0.94821 1.25935 0.95791 0.94878 1.02144 1.70059 1.47677 1.11214 1.29741 0.85713 0.79304 0.79557 0.78396 1.18555 1.20751 1.17905 0.91818 0.90450 0.93422 0.83202 0.90320 0.90665 0.88885 0.89030 0.90619 0.87073 0.77916 0.95882 0.95794 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.43 9.82 71.24 0.70 -1.73 16 2 C -0.18 -6.32 6.14 -19.99 -0.12 -6.44 16 3 C -0.22 -6.46 10.71 22.14 0.24 -6.22 16 4 C 0.01 0.26 6.89 41.08 0.28 0.55 16 5 C -0.08 -1.27 9.88 71.24 0.70 -0.57 16 6 N -0.44 -13.63 3.15 -518.68 -1.63 -15.26 16 7 C 0.05 1.21 9.16 127.77 1.17 2.38 16 8 C -0.03 -1.15 5.84 41.08 0.24 -0.91 16 9 C 0.20 8.39 2.97 29.85 0.09 8.48 16 10 H 0.09 4.26 7.22 -2.39 -0.02 4.24 16 11 O -0.57 -24.06 13.00 -148.98 -1.94 -26.00 16 12 C -0.02 -1.19 3.59 29.85 0.11 -1.08 16 13 C -0.52 -30.65 9.43 25.60 0.24 -30.41 16 14 H 0.03 2.21 7.99 -2.91 -0.02 2.19 16 15 C 0.01 0.57 5.47 84.66 0.46 1.04 16 16 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 17 Si 0.95 44.27 27.47 68.60 1.88 46.16 16 18 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.26 -11.40 6.54 99.48 0.65 -10.75 16 21 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.05 1.59 7.66 -2.38 -0.02 1.58 16 24 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.07 1.05 7.70 -2.39 -0.02 1.03 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.79 8.09 -2.38 -0.02 1.77 16 29 H 0.08 2.00 4.91 -2.38 -0.01 1.98 16 30 H 0.11 1.88 7.63 -2.39 -0.02 1.86 16 31 H 0.37 13.15 6.04 -74.05 -0.45 12.70 16 32 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 33 H 0.02 1.07 5.84 -2.39 -0.01 1.06 16 34 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 Total: -1.00 -72.14 277.45 3.31 -68.82 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.59 Total: 20.57 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 4.11 Total: -34.92 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -1.33 Total: -74.63 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -1.94 Total: -26.00 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Total: -72.14 3.31 -68.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260674636.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.936 kcal (2) G-P(sol) polarization free energy of solvation -72.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds