Wall clock time and date at job start Mon Mar 30 2020 03:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34473 * 126.16409 * 2 1 4 4 C 1.30256 * 108.70505 * 180.02562 * 3 2 1 5 5 C 1.50694 * 125.62114 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47340 * 90.02374 * 5 4 3 7 7 H 1.07996 * 119.99662 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00114 * 179.72325 * 6 5 4 9 9 N 1.31521 * 119.99961 * 0.27167 * 8 6 5 10 10 Si 1.86794 * 120.00268 * 180.27606 * 8 6 5 11 11 H 1.48497 * 109.47552 * 59.99594 * 10 8 6 12 12 H 1.48499 * 109.47504 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47108 * 299.99877 * 10 8 6 14 14 O 1.33967 * 108.75584 * 0.22609 * 4 3 2 15 15 C 1.34324 * 126.16716 * 180.02562 * 2 1 3 16 16 C 1.50696 * 126.44657 * 359.97438 * 15 2 1 17 17 C 1.53004 * 109.47372 * 53.78259 * 16 15 2 18 18 C 1.52998 * 109.47722 * 173.78589 * 16 15 2 19 19 C 1.53003 * 109.47282 * 293.78595 * 16 15 2 20 20 H 1.09003 * 109.47162 * 95.22954 * 1 2 3 21 21 H 1.08997 * 109.46700 * 215.22231 * 1 2 3 22 22 H 1.08996 * 109.47383 * 335.22897 * 1 2 3 23 23 H 1.08998 * 109.47350 * 330.02042 * 5 4 3 24 24 H 1.09011 * 109.46912 * 210.02349 * 5 4 3 25 25 H 0.97000 * 120.00158 * 179.97438 * 9 8 6 26 26 H 1.08997 * 109.46545 * 60.00191 * 17 16 15 27 27 H 1.08993 * 109.47421 * 180.02562 * 17 16 15 28 28 H 1.09003 * 109.46693 * 300.00683 * 17 16 15 29 29 H 1.09000 * 109.47206 * 59.99510 * 18 16 15 30 30 H 1.08998 * 109.47641 * 179.97438 * 18 16 15 31 31 H 1.09007 * 109.46926 * 300.00293 * 18 16 15 32 32 H 1.09002 * 109.46871 * 66.23027 * 19 16 15 33 33 H 1.08993 * 109.47720 * 186.23555 * 19 16 15 34 34 H 1.09002 * 109.46703 * 306.23648 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0856 0.0000 4 6 3.5431 0.6948 -0.0006 5 6 4.7478 1.6001 -0.0013 6 6 5.1505 1.9016 1.4193 7 1 4.5903 1.4796 2.2405 8 6 6.2379 2.7112 1.6705 9 7 6.9205 3.2247 0.6704 10 14 6.7418 3.0787 3.4313 11 1 7.0715 1.8091 4.1272 12 1 7.9319 3.9669 3.4305 13 1 5.6220 3.7531 4.1361 14 8 3.5734 -0.6445 -0.0059 15 6 2.2997 -1.0844 -0.0005 16 6 1.8494 -2.5225 -0.0006 17 6 0.8832 -2.7544 -1.1641 18 6 3.0654 -3.4378 -0.1573 19 6 1.1423 -2.8356 1.3196 20 1 -0.3634 -0.0937 -1.0234 21 1 -0.3632 -0.8395 0.5927 22 1 -0.3634 0.9331 0.4306 23 1 4.5034 2.5299 -0.5148 24 1 5.5726 1.1068 -0.5159 25 1 7.6853 3.7946 0.8471 26 1 1.3870 -2.5313 -2.1045 27 1 0.5572 -3.7944 -1.1639 28 1 0.0169 -2.1023 -1.0523 29 1 3.7537 -3.2726 0.6715 30 1 2.7397 -4.4780 -0.1569 31 1 3.5692 -3.2147 -1.0979 32 1 0.2165 -2.2635 1.3805 33 1 0.9150 -3.9006 1.3664 34 1 1.7916 -2.5658 2.1524 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260726695.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:31 Heat of formation + Delta-G solvation = -7.986697 kcal Electronic energy + Delta-G solvation = -15456.761577 eV Core-core repulsion = 12969.468998 eV Total energy + Delta-G solvation = -2487.292579 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.55442 -37.00881 -34.35159 -33.40558 -30.92985 -28.89103 -27.29844 -27.08087 -26.23489 -23.63191 -20.81701 -20.45832 -19.10856 -16.67529 -15.94667 -15.60013 -14.82805 -14.56892 -14.11202 -14.00546 -13.10800 -12.87525 -12.41167 -12.28266 -12.21907 -12.16226 -12.06655 -11.65306 -11.60758 -11.20096 -10.99615 -10.88795 -10.75132 -10.57979 -10.21673 -9.99508 -9.54755 -9.53402 -8.52385 -7.71076 -6.14715 -4.19374 2.25390 3.30276 3.33312 3.35714 3.48083 3.53958 4.38656 4.77685 4.93560 4.95797 4.97542 5.21645 5.30893 5.42357 5.57090 5.60930 5.72290 5.81787 5.85367 5.88641 5.91031 5.99459 6.14056 6.17726 6.32083 6.34978 6.72401 6.80860 7.11119 7.33038 7.34511 7.79397 8.08321 8.73562 8.81028 9.44168 10.95468 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.038320 B = 0.006854 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.504028 B = 4084.268285 C = 4219.387516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.014 4.014 3 N -0.508 5.508 4 C 0.249 3.751 5 C 0.105 3.895 6 C -0.518 4.518 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.904 3.096 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.274 1.274 14 O -0.200 6.200 15 C -0.078 4.078 16 C 0.027 3.973 17 C -0.143 4.143 18 C -0.142 4.142 19 C -0.142 4.142 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.266 0.734 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.592 -11.886 -1.735 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.134 4.134 3 N -0.236 5.236 4 C 0.043 3.957 5 C 0.068 3.932 6 C -0.557 4.557 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.731 3.269 11 H -0.201 1.201 12 H -0.210 1.210 13 H -0.200 1.200 14 O -0.088 6.088 15 C -0.131 4.131 16 C 0.026 3.974 17 C -0.200 4.200 18 C -0.199 4.199 19 C -0.199 4.199 20 H 0.086 0.914 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.591 -11.156 -1.790 15.487 hybrid contribution 0.602 -0.346 0.939 1.168 sum -9.989 -11.503 -0.851 15.259 Atomic orbital electron populations 1.20184 0.87951 1.02693 1.01772 1.21346 0.97245 0.88429 1.06353 1.70435 1.00988 1.30443 1.21780 1.27668 0.96313 0.78162 0.93541 1.18028 0.84683 0.90974 0.99565 1.20834 1.13369 1.30932 0.90575 0.92289 1.24940 0.95804 0.95291 0.97888 1.69927 1.19411 1.32694 1.30945 0.86449 0.78039 0.78370 0.84013 1.20063 1.20971 1.19971 1.84422 1.29186 1.25180 1.70051 1.22713 0.81853 0.96539 1.12040 1.18876 0.95692 0.86251 0.96568 1.21992 0.99035 1.01750 0.97270 1.21836 0.96983 0.98196 1.02877 1.21960 1.00646 1.01320 0.96004 0.91444 0.91152 0.91127 0.91786 0.93408 0.92396 0.92347 0.91836 0.91600 0.91972 0.92253 0.92224 0.91899 0.91812 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 8.59 36.01 0.31 -0.68 16 2 C -0.01 -0.27 6.94 -82.82 -0.57 -0.85 16 3 N -0.51 -12.09 11.29 -7.36 -0.08 -12.17 16 4 C 0.25 6.15 7.53 -12.95 -0.10 6.05 16 5 C 0.11 2.82 5.60 -29.04 -0.16 2.66 16 6 C -0.52 -14.89 9.09 -34.44 -0.31 -15.21 16 7 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 10 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 O -0.20 -4.53 10.25 5.36 0.05 -4.47 16 15 C -0.08 -1.47 5.69 -35.69 -0.20 -1.67 16 16 C 0.03 0.37 0.78 -155.66 -0.12 0.25 16 17 C -0.14 -1.60 8.26 37.16 0.31 -1.29 16 18 C -0.14 -1.85 8.07 37.16 0.30 -1.55 16 19 C -0.14 -1.68 8.32 37.16 0.31 -1.37 16 20 H 0.07 0.84 7.58 -51.93 -0.39 0.45 16 21 H 0.07 0.83 5.17 -51.93 -0.27 0.56 16 22 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.06 1.78 8.14 -51.93 -0.42 1.35 16 24 H 0.05 1.29 8.14 -51.92 -0.42 0.87 16 25 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.69 5.35 -51.93 -0.28 0.41 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.06 0.69 5.69 -51.93 -0.30 0.39 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 281.28 15.07 4.24 4.24 Total: -1.00 -31.15 281.28 -5.42 -36.57 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -5.00 Total: -3.55 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -0.34 Total: -11.96 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.65 Total: -37.46 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: 0.05 Total: -4.47 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.15 -5.42 -36.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260726695.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.580 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds