Wall clock time and date at job start Mon Mar 30 2020 03:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34473 * 126.16409 * 2 1 4 4 C 1.30256 * 108.70505 * 180.02562 * 3 2 1 5 5 C 1.50694 * 125.62114 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47340 * 90.02374 * 5 4 3 7 7 H 1.07996 * 119.99662 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00114 * 179.72325 * 6 5 4 9 9 N 1.31521 * 119.99961 * 0.27167 * 8 6 5 10 10 Si 1.86794 * 120.00268 * 180.27606 * 8 6 5 11 11 H 1.48497 * 109.47552 * 59.99594 * 10 8 6 12 12 H 1.48499 * 109.47504 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47108 * 299.99877 * 10 8 6 14 14 O 1.33967 * 108.75584 * 0.22609 * 4 3 2 15 15 C 1.34324 * 126.16716 * 180.02562 * 2 1 3 16 16 C 1.50696 * 126.44657 * 359.97438 * 15 2 1 17 17 C 1.53004 * 109.47372 * 53.78259 * 16 15 2 18 18 C 1.52998 * 109.47722 * 173.78589 * 16 15 2 19 19 C 1.53003 * 109.47282 * 293.78595 * 16 15 2 20 20 H 1.09003 * 109.47162 * 95.22954 * 1 2 3 21 21 H 1.08997 * 109.46700 * 215.22231 * 1 2 3 22 22 H 1.08996 * 109.47383 * 335.22897 * 1 2 3 23 23 H 1.08998 * 109.47350 * 330.02042 * 5 4 3 24 24 H 1.09011 * 109.46912 * 210.02349 * 5 4 3 25 25 H 0.97000 * 120.00158 * 179.97438 * 9 8 6 26 26 H 1.08997 * 109.46545 * 60.00191 * 17 16 15 27 27 H 1.08993 * 109.47421 * 180.02562 * 17 16 15 28 28 H 1.09003 * 109.46693 * 300.00683 * 17 16 15 29 29 H 1.09000 * 109.47206 * 59.99510 * 18 16 15 30 30 H 1.08998 * 109.47641 * 179.97438 * 18 16 15 31 31 H 1.09007 * 109.46926 * 300.00293 * 18 16 15 32 32 H 1.09002 * 109.46871 * 66.23027 * 19 16 15 33 33 H 1.08993 * 109.47720 * 186.23555 * 19 16 15 34 34 H 1.09002 * 109.46703 * 306.23648 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0856 0.0000 4 6 3.5431 0.6948 -0.0006 5 6 4.7478 1.6001 -0.0013 6 6 5.1505 1.9016 1.4193 7 1 4.5903 1.4796 2.2405 8 6 6.2379 2.7112 1.6705 9 7 6.9205 3.2247 0.6704 10 14 6.7418 3.0787 3.4313 11 1 7.0715 1.8091 4.1272 12 1 7.9319 3.9669 3.4305 13 1 5.6220 3.7531 4.1361 14 8 3.5734 -0.6445 -0.0059 15 6 2.2997 -1.0844 -0.0005 16 6 1.8494 -2.5225 -0.0006 17 6 0.8832 -2.7544 -1.1641 18 6 3.0654 -3.4378 -0.1573 19 6 1.1423 -2.8356 1.3196 20 1 -0.3634 -0.0937 -1.0234 21 1 -0.3632 -0.8395 0.5927 22 1 -0.3634 0.9331 0.4306 23 1 4.5034 2.5299 -0.5148 24 1 5.5726 1.1068 -0.5159 25 1 7.6853 3.7946 0.8471 26 1 1.3870 -2.5313 -2.1045 27 1 0.5572 -3.7944 -1.1639 28 1 0.0169 -2.1023 -1.0523 29 1 3.7537 -3.2726 0.6715 30 1 2.7397 -4.4780 -0.1569 31 1 3.5692 -3.2147 -1.0979 32 1 0.2165 -2.2635 1.3805 33 1 0.9150 -3.9006 1.3664 34 1 1.7916 -2.5658 2.1524 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260726695.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:30 Heat of formation + Delta-G solvation = -29.021362 kcal Electronic energy + Delta-G solvation = -15457.673709 eV Core-core repulsion = 12969.468998 eV Total energy + Delta-G solvation = -2488.204710 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.23382 -38.14432 -36.04028 -35.50435 -32.70344 -30.57245 -28.22622 -28.17367 -27.68798 -25.65347 -22.40826 -22.14736 -20.47286 -18.81274 -17.44582 -17.36787 -16.66922 -15.94155 -15.41752 -15.04089 -14.60781 -14.40105 -14.16060 -13.79722 -13.65849 -13.32893 -13.10012 -13.06089 -12.84999 -12.69737 -12.57477 -12.39502 -12.11172 -12.02193 -11.92928 -11.72188 -11.53922 -11.16587 -10.71140 -9.30809 -8.31907 -6.47157 0.62199 1.37476 1.41137 1.49494 1.80420 1.89516 2.36652 3.00062 3.33185 3.64606 3.85282 3.97087 4.00468 4.24977 4.58931 4.64528 4.70770 4.76362 4.78927 4.87118 4.90006 4.95573 4.99383 5.07760 5.08233 5.14626 5.29650 5.31050 5.39613 5.41362 5.56190 5.61669 5.91385 6.57307 7.00311 7.21133 8.78039 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.038320 B = 0.006854 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.504028 B = 4084.268285 C = 4219.387516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.036 4.036 3 N -0.525 5.525 4 C 0.212 3.788 5 C 0.116 3.884 6 C -0.543 4.543 7 H 0.049 0.951 8 C 0.016 3.984 9 N -0.921 5.921 10 Si 0.974 3.026 11 H -0.267 1.267 12 H -0.271 1.271 13 H -0.270 1.270 14 O -0.215 6.215 15 C -0.068 4.068 16 C 0.022 3.978 17 C -0.140 4.140 18 C -0.142 4.142 19 C -0.140 4.140 20 H 0.090 0.910 21 H 0.101 0.899 22 H 0.066 0.934 23 H 0.042 0.958 24 H 0.032 0.968 25 H 0.273 0.727 26 H 0.046 0.954 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.393 -13.767 -0.848 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.155 4.155 3 N -0.256 5.256 4 C 0.006 3.994 5 C 0.079 3.921 6 C -0.582 4.582 7 H 0.067 0.933 8 C -0.184 4.184 9 N -0.559 5.559 10 Si 0.797 3.203 11 H -0.192 1.192 12 H -0.195 1.195 13 H -0.195 1.195 14 O -0.103 6.103 15 C -0.120 4.120 16 C 0.021 3.979 17 C -0.197 4.197 18 C -0.199 4.199 19 C -0.196 4.196 20 H 0.108 0.892 21 H 0.119 0.881 22 H 0.085 0.915 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.394 -13.053 -0.914 18.023 hybrid contribution 1.090 0.152 0.607 1.257 sum -11.304 -12.901 -0.308 17.155 Atomic orbital electron populations 1.20372 0.84099 1.03873 1.03814 1.22167 0.99538 0.87252 1.06591 1.70359 1.01179 1.32714 1.21345 1.27006 0.96086 0.78976 0.97367 1.17611 0.85394 0.90593 0.98547 1.21057 1.14147 1.31859 0.91112 0.93294 1.25860 0.95378 0.94588 1.02593 1.70027 1.19756 1.32895 1.33234 0.85372 0.78036 0.78601 0.78300 1.19185 1.19508 1.19466 1.84389 1.31597 1.24248 1.70057 1.23964 0.80146 0.99143 1.08774 1.19310 0.96687 0.82715 0.99163 1.22012 0.98273 1.04238 0.95152 1.21862 0.96424 1.00343 1.01265 1.21981 1.00215 1.03833 0.93617 0.89196 0.88078 0.91526 0.93971 0.94946 0.91821 0.93488 0.88343 0.90620 0.94084 0.88460 0.93552 0.90744 0.88256 0.94357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 8.59 71.24 0.61 -1.09 16 2 C -0.04 -1.39 6.94 41.26 0.29 -1.10 16 3 N -0.53 -25.75 11.29 -291.99 -3.30 -29.05 16 4 C 0.21 10.97 7.53 88.34 0.67 11.63 16 5 C 0.12 6.64 5.60 29.10 0.16 6.80 16 6 C -0.54 -32.51 9.09 25.60 0.23 -32.28 16 7 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 8 C 0.02 0.91 5.46 84.65 0.46 1.37 16 9 N -0.92 -55.01 13.29 21.45 0.28 -54.73 16 10 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 O -0.22 -10.09 10.25 -3.74 -0.04 -10.13 16 15 C -0.07 -2.51 5.69 24.79 0.14 -2.37 16 16 C 0.02 0.54 0.78 -52.93 -0.04 0.50 16 17 C -0.14 -2.56 8.26 71.98 0.59 -1.97 16 18 C -0.14 -3.43 8.07 71.98 0.58 -2.85 16 19 C -0.14 -2.80 8.32 71.98 0.60 -2.20 16 20 H 0.09 1.95 7.58 -2.39 -0.02 1.94 16 21 H 0.10 1.99 5.17 -2.39 -0.01 1.97 16 22 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 23 H 0.04 2.52 8.14 -2.39 -0.02 2.50 16 24 H 0.03 1.88 8.14 -2.38 -0.02 1.86 16 25 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.25 5.35 -2.39 -0.01 1.24 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.07 1.31 5.69 -2.39 -0.01 1.30 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -70.52 281.28 4.35 -66.17 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.08 Total: 4.52 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 4.30 Total: -23.55 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -3.01 Total: -83.78 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.04 Total: -10.13 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -70.52 4.35 -66.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260726695.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.153 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds