Wall clock time and date at job start Mon Mar 30 2020 02:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.53084 * 109.47451 * 179.97438 * 9 7 2 11 11 H 1.09091 * 109.42208 * 305.00308 * 10 9 7 12 12 C 1.52994 * 109.67415 * 184.54026 * 10 9 7 13 13 N 1.45984 * 111.60069 * 197.18798 * 12 10 9 14 14 C 1.46351 * 112.79847 * 114.07077 * 13 12 10 15 15 C 1.52850 * 110.76710 * 288.85080 * 14 13 12 16 16 C 1.53146 * 109.75719 * 304.21300 * 15 14 13 17 17 C 1.53427 * 108.66978 * 57.41848 * 16 15 14 18 18 H 1.08569 * 111.48618 * 176.83663 * 17 16 15 19 19 C 1.46413 * 113.73363 * 344.90555 * 13 12 10 20 20 C 1.51517 * 109.55714 * 65.16571 * 10 9 7 21 21 O 1.20535 * 121.77822 * 354.51889 * 20 10 9 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 24 24 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 25 25 H 1.09259 * 109.19693 * 318.32967 * 12 10 9 26 26 H 1.09448 * 108.98811 * 76.54660 * 12 10 9 27 27 H 1.09127 * 109.29848 * 168.42312 * 14 13 12 28 28 H 1.09137 * 109.30459 * 49.25974 * 14 13 12 29 29 H 1.09173 * 109.31243 * 184.39896 * 15 14 13 30 30 H 1.08937 * 109.67752 * 64.80393 * 15 14 13 31 31 H 1.09033 * 109.61747 * 297.63900 * 16 15 14 32 32 H 1.08999 * 109.68094 * 177.31200 * 16 15 14 33 33 H 1.08878 * 109.99219 * 307.67649 * 19 13 12 34 34 H 1.09040 * 109.71492 * 187.07013 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2459 -3.6627 0.0005 11 1 2.9302 -3.5549 -0.8422 12 6 1.4890 -4.9875 -0.1135 13 7 2.3233 -6.1187 0.2808 14 6 1.8437 -6.7811 1.4945 15 6 2.0796 -5.9010 2.7217 16 6 3.5630 -5.5322 2.8168 17 6 3.9775 -4.8256 1.5195 18 1 5.0105 -4.4938 1.5600 19 6 3.7508 -5.8014 0.3525 20 6 3.0313 -3.6586 1.2963 21 8 2.9122 -2.7754 2.1079 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8897 25 1 0.6018 -4.9503 0.5230 26 1 1.1647 -5.1242 -1.1498 27 1 2.3733 -7.7267 1.6226 28 1 0.7756 -6.9834 1.3971 29 1 1.7862 -6.4478 3.6199 30 1 1.4801 -4.9948 2.6439 31 1 4.1575 -6.4369 2.9469 32 1 3.7219 -4.8660 3.6647 33 1 4.0768 -5.3400 -0.5782 34 1 4.3220 -6.7136 0.5278 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260727098.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:08 Heat of formation + Delta-G solvation = -47.806414 kcal Electronic energy + Delta-G solvation = -16236.265709 eV Core-core repulsion = 13747.246418 eV Total energy + Delta-G solvation = -2489.019291 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.72070 -37.36381 -34.52842 -32.75050 -31.58521 -30.50803 -26.67713 -24.81056 -23.57216 -22.50836 -21.58315 -20.22624 -17.26669 -16.95942 -16.25694 -15.74993 -14.99459 -14.74768 -13.87562 -13.82196 -13.65467 -13.17449 -12.72195 -12.44906 -12.24146 -11.98824 -11.63778 -11.54054 -11.17990 -11.03059 -10.88811 -10.66500 -10.51085 -10.32900 -10.06213 -9.88266 -8.61207 -8.54129 -8.21403 -7.87155 -6.27094 -3.93049 2.72392 3.48057 3.52833 3.69819 4.04134 4.44652 4.62116 4.78282 4.88837 5.03466 5.11527 5.34934 5.38955 5.46855 5.51705 5.59237 5.68368 5.77187 5.86737 5.90436 5.96617 6.02232 6.10267 6.26872 6.32565 6.38250 6.67805 7.26666 7.29324 7.33780 7.46040 8.23754 8.30257 8.52634 8.96207 9.75213 11.13921 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.044169 B = 0.008492 C = 0.008023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.781478 B = 3296.313660 C = 3489.286390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 1.067 2.933 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.579 4.579 8 H 0.043 0.957 9 C 0.025 3.975 10 C -0.146 4.146 11 H 0.094 0.906 12 C 0.073 3.927 13 N -0.557 5.557 14 C 0.066 3.934 15 C -0.164 4.164 16 C -0.101 4.101 17 C -0.183 4.183 18 H 0.103 0.897 19 C 0.076 3.924 20 C 0.364 3.636 21 O -0.418 6.418 22 H 0.266 0.734 23 H 0.010 0.990 24 H 0.014 0.986 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.382 -14.202 2.055 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.189 4.189 3 Si 0.895 3.105 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.618 4.618 8 H 0.061 0.939 9 C -0.012 4.012 10 C -0.166 4.166 11 H 0.112 0.888 12 C -0.054 4.054 13 N -0.279 5.279 14 C -0.062 4.062 15 C -0.203 4.203 16 C -0.138 4.138 17 C -0.204 4.204 18 H 0.121 0.879 19 C -0.052 4.052 20 C 0.236 3.764 21 O -0.286 6.286 22 H 0.077 0.923 23 H 0.028 0.972 24 H 0.032 0.968 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.049 -12.389 2.144 13.953 hybrid contribution 0.396 -1.108 0.645 1.342 sum 6.445 -13.497 2.789 15.215 Atomic orbital electron populations 1.70790 1.06807 1.30321 1.47460 1.25739 0.96546 1.02556 0.94029 0.83580 0.74939 0.75553 0.76399 1.20797 1.21549 1.21567 1.21824 0.93788 0.91668 1.54515 0.93859 1.19120 0.93722 0.92105 0.96280 1.22288 1.00040 0.97200 0.97066 0.88798 1.22023 0.95027 0.86719 1.01622 1.60098 1.02895 1.30628 1.34248 1.22008 1.00596 0.96611 0.87018 1.22254 0.96925 1.01347 0.99807 1.21458 0.96101 0.99923 0.96366 1.22956 1.01363 0.97821 0.98277 0.87895 1.22009 0.88428 0.97640 0.97161 1.24696 0.80574 0.83773 0.87404 1.90340 1.58881 1.34743 1.44663 0.92346 0.97187 0.96782 0.92127 0.90514 0.90866 0.90858 0.91306 0.91644 0.91330 0.91378 0.90013 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.03 13.65 55.43 0.76 -28.27 16 2 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 3 Si 1.07 26.72 29.90 -169.99 -5.08 21.63 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.58 -17.04 7.73 -34.44 -0.27 -17.31 16 8 H 0.04 1.28 7.58 -52.48 -0.40 0.88 16 9 C 0.03 0.65 3.38 -27.84 -0.09 0.56 16 10 C -0.15 -2.98 1.96 -91.33 -0.18 -3.16 16 11 H 0.09 1.88 7.58 -51.88 -0.39 1.48 16 12 C 0.07 1.22 5.33 -4.32 -0.02 1.20 16 13 N -0.56 -7.84 4.75 -235.44 -1.12 -8.96 16 14 C 0.07 0.81 5.57 -4.20 -0.02 0.79 16 15 C -0.16 -2.22 5.52 -26.73 -0.15 -2.37 16 16 C -0.10 -1.35 5.48 -26.43 -0.14 -1.50 16 17 C -0.18 -2.74 3.67 -90.54 -0.33 -3.07 16 18 H 0.10 1.41 8.11 -52.17 -0.42 0.99 16 19 C 0.08 0.99 5.44 -3.67 -0.02 0.97 16 20 C 0.36 7.39 4.33 -28.04 -0.12 7.27 16 21 O -0.42 -10.40 15.81 6.18 0.10 -10.30 16 22 H 0.27 8.36 7.22 -40.82 -0.29 8.07 16 23 H 0.01 0.28 7.95 -51.93 -0.41 -0.13 16 24 H 0.01 0.37 8.01 -51.93 -0.42 -0.04 16 25 H 0.06 1.04 7.11 -51.78 -0.37 0.68 16 26 H 0.08 1.22 8.18 -51.68 -0.42 0.80 16 27 H 0.07 0.77 8.15 -51.86 -0.42 0.34 16 28 H 0.07 0.87 7.96 -51.85 -0.41 0.45 16 29 H 0.07 0.79 8.16 -51.83 -0.42 0.37 16 30 H 0.06 1.11 6.56 -51.96 -0.34 0.77 16 31 H 0.07 0.74 8.14 -51.91 -0.42 0.32 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.06 7.36 -52.00 -0.38 0.67 16 34 H 0.08 0.83 8.15 -51.91 -0.42 0.41 16 LS Contribution 263.67 15.07 3.97 3.97 Total: -1.00 -33.30 263.67 -8.00 -41.29 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -5.17 Total: -3.09 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -1.45 Total: -16.28 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.36 Total: -37.23 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.10 Total: -10.30 kcal Atomic # 14 Polarization: 26.72 SS G_CDS: -5.08 Total: 21.63 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.30 -8.00 -41.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260727098.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.512 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds