Wall clock time and date at job start Mon Mar 30 2020 02:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.53084 * 109.47451 * 179.97438 * 9 7 2 11 11 H 1.09091 * 109.42208 * 305.00308 * 10 9 7 12 12 C 1.52994 * 109.67415 * 184.54026 * 10 9 7 13 13 N 1.45984 * 111.60069 * 197.18798 * 12 10 9 14 14 C 1.46351 * 112.79847 * 114.07077 * 13 12 10 15 15 C 1.52850 * 110.76710 * 288.85080 * 14 13 12 16 16 C 1.53146 * 109.75719 * 304.21300 * 15 14 13 17 17 C 1.53427 * 108.66978 * 57.41848 * 16 15 14 18 18 H 1.08569 * 111.48618 * 176.83663 * 17 16 15 19 19 C 1.46413 * 113.73363 * 344.90555 * 13 12 10 20 20 C 1.51517 * 109.55714 * 65.16571 * 10 9 7 21 21 O 1.20535 * 121.77822 * 354.51889 * 20 10 9 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 24 24 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 25 25 H 1.09259 * 109.19693 * 318.32967 * 12 10 9 26 26 H 1.09448 * 108.98811 * 76.54660 * 12 10 9 27 27 H 1.09127 * 109.29848 * 168.42312 * 14 13 12 28 28 H 1.09137 * 109.30459 * 49.25974 * 14 13 12 29 29 H 1.09173 * 109.31243 * 184.39896 * 15 14 13 30 30 H 1.08937 * 109.67752 * 64.80393 * 15 14 13 31 31 H 1.09033 * 109.61747 * 297.63900 * 16 15 14 32 32 H 1.08999 * 109.68094 * 177.31200 * 16 15 14 33 33 H 1.08878 * 109.99219 * 307.67649 * 19 13 12 34 34 H 1.09040 * 109.71492 * 187.07013 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2459 -3.6627 0.0005 11 1 2.9302 -3.5549 -0.8422 12 6 1.4890 -4.9875 -0.1135 13 7 2.3233 -6.1187 0.2808 14 6 1.8437 -6.7811 1.4945 15 6 2.0796 -5.9010 2.7217 16 6 3.5630 -5.5322 2.8168 17 6 3.9775 -4.8256 1.5195 18 1 5.0105 -4.4938 1.5600 19 6 3.7508 -5.8014 0.3525 20 6 3.0313 -3.6586 1.2963 21 8 2.9122 -2.7754 2.1079 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8897 25 1 0.6018 -4.9503 0.5230 26 1 1.1647 -5.1242 -1.1498 27 1 2.3733 -7.7267 1.6226 28 1 0.7756 -6.9834 1.3971 29 1 1.7862 -6.4478 3.6199 30 1 1.4801 -4.9948 2.6439 31 1 4.1575 -6.4369 2.9469 32 1 3.7219 -4.8660 3.6647 33 1 4.0768 -5.3400 -0.5782 34 1 4.3220 -6.7136 0.5278 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260727098.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:08 Heat of formation + Delta-G solvation = -71.177660 kcal Electronic energy + Delta-G solvation = -16237.279163 eV Core-core repulsion = 13747.246418 eV Total energy + Delta-G solvation = -2490.032745 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.08503 -38.89625 -36.36713 -34.50931 -32.91397 -31.94410 -28.45956 -26.23714 -25.14897 -24.17241 -22.87812 -21.66059 -19.06229 -18.73529 -17.72925 -17.16955 -16.42041 -15.94675 -15.68851 -15.23117 -15.21136 -14.82504 -14.35431 -14.02230 -13.57606 -13.45414 -13.23559 -13.00000 -12.76146 -12.51051 -12.46967 -12.17165 -12.02279 -11.89649 -11.74653 -11.42216 -10.77124 -10.61150 -10.09933 -9.09577 -8.69488 -6.36345 1.12413 1.43866 1.54080 1.72791 2.52050 2.87878 3.04097 3.16138 3.63946 3.80346 3.87238 3.91292 4.05730 4.11907 4.17481 4.43629 4.53204 4.58802 4.70472 4.71800 4.86102 4.89008 4.91811 4.98026 5.04124 5.09928 5.15511 5.26418 5.33293 5.91299 6.11746 6.15059 6.21381 6.53656 6.73112 7.40568 8.70950 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.044169 B = 0.008492 C = 0.008023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.781478 B = 3296.313660 C = 3489.286390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.044 4.044 3 Si 1.113 2.887 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.588 4.588 8 H 0.038 0.962 9 C 0.029 3.971 10 C -0.147 4.147 11 H 0.102 0.898 12 C 0.085 3.915 13 N -0.551 5.551 14 C 0.065 3.935 15 C -0.164 4.164 16 C -0.099 4.099 17 C -0.173 4.173 18 H 0.122 0.878 19 C 0.076 3.924 20 C 0.360 3.640 21 O -0.479 6.479 22 H 0.253 0.747 23 H -0.026 1.026 24 H 0.002 0.998 25 H 0.045 0.955 26 H 0.086 0.914 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.016 0.984 31 H 0.112 0.888 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.599 -16.442 1.802 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.240 4.240 3 Si 0.934 3.066 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.626 4.626 8 H 0.056 0.944 9 C -0.008 4.008 10 C -0.167 4.167 11 H 0.120 0.880 12 C -0.043 4.043 13 N -0.272 5.272 14 C -0.063 4.063 15 C -0.203 4.203 16 C -0.136 4.136 17 C -0.194 4.194 18 H 0.140 0.860 19 C -0.052 4.052 20 C 0.236 3.764 21 O -0.352 6.352 22 H 0.062 0.938 23 H -0.007 1.007 24 H 0.020 0.980 25 H 0.064 0.936 26 H 0.104 0.896 27 H 0.129 0.871 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.035 0.965 31 H 0.131 0.869 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.275 -14.682 1.869 16.957 hybrid contribution -0.321 -0.461 0.750 0.937 sum 7.953 -15.143 2.619 17.304 Atomic orbital electron populations 1.70920 1.07756 1.29528 1.49680 1.27326 0.96720 1.06734 0.93249 0.83004 0.74269 0.71566 0.77747 1.20394 1.20778 1.18619 1.22180 0.93718 0.93233 1.53454 0.94396 1.18959 0.94273 0.93763 0.93808 1.22249 0.99262 0.97046 0.98155 0.88018 1.21838 0.94540 0.85877 1.02022 1.60202 1.03275 1.28441 1.35273 1.22164 1.01492 0.97274 0.85325 1.22268 0.96518 0.99789 1.01766 1.21520 0.96394 1.01080 0.94599 1.23004 1.00461 0.95563 1.00351 0.86027 1.22219 0.87877 0.98873 0.96231 1.25441 0.80518 0.84442 0.86044 1.90315 1.60985 1.37585 1.46305 0.93807 1.00741 0.98024 0.93619 0.89626 0.87105 0.90687 0.89055 0.96477 0.86938 0.93223 0.89816 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.74 13.65 21.45 0.29 -61.45 16 2 C -0.04 -2.73 5.46 84.65 0.46 -2.27 16 3 Si 1.11 54.29 29.90 68.60 2.05 56.34 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.59 -35.75 7.73 25.60 0.20 -35.55 16 8 H 0.04 2.29 7.58 -2.91 -0.02 2.27 16 9 C 0.03 1.61 3.38 29.88 0.10 1.71 16 10 C -0.15 -6.11 1.96 -11.25 -0.02 -6.13 16 11 H 0.10 4.04 7.58 -2.34 -0.02 4.03 16 12 C 0.09 2.81 5.33 86.47 0.46 3.27 16 13 N -0.55 -13.80 4.75 -898.81 -4.27 -18.06 16 14 C 0.06 1.38 5.57 86.36 0.48 1.86 16 15 C -0.16 -4.14 5.52 30.59 0.17 -3.97 16 16 C -0.10 -2.34 5.48 30.79 0.17 -2.17 16 17 C -0.17 -4.71 3.67 -10.74 -0.04 -4.75 16 18 H 0.12 2.93 8.11 -2.61 -0.02 2.91 16 19 C 0.08 1.64 5.44 86.67 0.47 2.12 16 20 C 0.36 14.76 4.33 29.74 0.13 14.89 16 21 O -0.48 -24.89 15.81 -0.79 -0.01 -24.90 16 22 H 0.25 16.76 7.22 -92.71 -0.67 16.09 16 23 H -0.03 -1.57 7.95 -2.39 -0.02 -1.59 16 24 H 0.00 0.09 8.01 -2.38 -0.02 0.07 16 25 H 0.05 1.62 7.11 -2.25 -0.02 1.61 16 26 H 0.09 2.66 8.18 -2.15 -0.02 2.64 16 27 H 0.11 1.64 8.15 -2.32 -0.02 1.62 16 28 H 0.07 1.58 7.96 -2.31 -0.02 1.56 16 29 H 0.09 1.87 8.16 -2.30 -0.02 1.85 16 30 H 0.02 0.58 6.56 -2.42 -0.02 0.56 16 31 H 0.11 1.77 8.14 -2.37 -0.02 1.75 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.83 7.36 -2.45 -0.02 1.81 16 34 H 0.12 1.74 8.15 -2.37 -0.02 1.72 16 Total: -1.00 -76.70 263.67 1.82 -74.88 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.17 Total: 4.19 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 2.58 Total: -30.99 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -3.97 Total: -79.51 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.01 Total: -24.90 kcal Atomic # 14 Polarization: 54.29 SS G_CDS: 2.05 Total: 56.34 kcal Total: -76.70 1.82 -74.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260727098.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.701 kcal (2) G-P(sol) polarization free energy of solvation -76.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds