Wall clock time and date at job start Mon Mar 30 2020 03:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46842 * 2 1 4 4 O 1.34604 * 126.32217 * 270.02650 * 3 2 1 5 5 C 1.34945 * 107.60735 * 179.73656 * 4 3 2 6 6 C 1.39806 * 125.79632 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99957 * 179.97438 * 6 5 4 8 8 C 1.40337 * 119.99675 * 359.96972 * 6 5 4 9 9 N 1.30630 * 120.00320 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99498 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47544 * 90.00547 * 10 8 6 12 12 H 1.48508 * 109.46821 * 209.99925 * 10 8 6 13 13 H 1.48502 * 109.47453 * 329.99922 * 10 8 6 14 14 N 1.32810 * 108.40726 * 359.97438 * 5 4 3 15 15 C 1.33068 * 108.64824 * 0.02562 * 14 5 4 16 16 C 1.50693 * 126.00939 * 180.02562 * 15 14 5 17 17 C 1.53004 * 109.47105 * 269.97012 * 16 15 14 18 18 C 1.53002 * 109.46862 * 64.99887 * 17 16 15 19 19 C 1.53001 * 109.47182 * 184.99848 * 17 16 15 20 20 H 1.09000 * 109.46902 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47101 * 299.99605 * 1 2 3 22 22 H 1.08995 * 109.47482 * 60.00154 * 1 2 3 23 23 H 1.08998 * 109.47101 * 240.00395 * 2 1 3 24 24 H 1.08995 * 109.47482 * 119.99846 * 2 1 3 25 25 H 0.97001 * 119.99491 * 179.97438 * 9 8 6 26 26 H 1.08997 * 109.47381 * 29.97445 * 16 15 14 27 27 H 1.09001 * 109.47242 * 149.96992 * 16 15 14 28 28 H 1.08994 * 109.47170 * 305.00093 * 17 16 15 29 29 H 1.09008 * 109.46660 * 60.00370 * 18 17 16 30 30 H 1.08995 * 109.47174 * 179.97438 * 18 17 16 31 31 H 1.08992 * 109.47545 * 300.00316 * 18 17 16 32 32 H 1.09003 * 109.46901 * 60.00122 * 19 17 16 33 33 H 1.09000 * 109.46828 * 180.02562 * 19 17 16 34 34 H 1.08994 * 109.47268 * 300.00185 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2975 2.1727 -1.0845 5 6 2.7181 3.3796 -0.6515 6 6 3.0947 4.4538 -1.4632 7 1 3.4175 5.3820 -1.0151 8 6 3.0535 4.3260 -2.8601 9 7 2.6627 3.2035 -3.4020 10 14 3.5575 5.7611 -3.9445 11 1 5.0127 5.6797 -4.2288 12 1 2.8001 5.7069 -5.2208 13 1 3.2601 7.0375 -3.2463 14 7 2.7124 3.3741 0.6765 15 6 2.2951 2.1819 1.0953 16 6 2.1402 1.7515 2.5311 17 6 3.4496 1.1301 3.0213 18 6 4.5467 2.1965 3.0344 19 6 3.2553 0.5809 4.4361 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.6339 3.1154 -4.3676 26 1 1.8967 2.6180 3.1459 27 1 1.3389 1.0164 2.6057 28 1 3.7393 0.3190 2.3533 29 1 4.2570 3.0076 3.7025 30 1 5.4794 1.7539 3.3840 31 1 4.6852 2.5878 2.0266 32 1 2.4736 -0.1788 4.4267 33 1 4.1882 0.1386 4.7854 34 1 2.9656 1.3920 5.1041 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260739426.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:10 Heat of formation + Delta-G solvation = -48.304741 kcal Electronic energy + Delta-G solvation = -15554.041426 eV Core-core repulsion = 13065.000526 eV Total energy + Delta-G solvation = -2489.040900 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.99479 -37.59293 -35.75363 -34.55873 -34.33578 -30.82549 -28.63583 -27.91628 -26.65879 -23.88568 -22.14099 -21.50611 -20.74165 -19.13523 -17.15279 -16.67165 -16.54372 -15.82912 -15.42572 -14.99694 -14.79964 -14.60199 -14.13289 -13.41222 -13.35642 -13.04790 -13.02681 -12.94555 -12.81834 -12.56769 -12.21896 -12.05355 -11.97392 -11.87947 -11.71797 -11.49086 -11.41312 -10.98816 -10.45827 -9.16254 -8.82199 -6.65825 1.12947 1.36654 1.54019 1.57660 2.16107 2.25207 2.92284 3.23851 3.90652 4.04448 4.14123 4.22280 4.38088 4.42158 4.52186 4.64745 4.73793 4.86360 4.91727 4.93982 5.00874 5.04245 5.07800 5.12866 5.15783 5.28198 5.30077 5.36434 5.52121 5.56544 5.93938 6.08727 6.22619 6.56570 6.70254 7.89989 8.23112 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032098 B = 0.008281 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.120697 B = 3380.381960 C = 4049.603269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.010 4.010 3 C -0.208 4.208 4 O -0.211 6.211 5 C 0.308 3.692 6 C -0.467 4.467 7 H 0.107 0.893 8 C 0.027 3.973 9 N -0.815 5.815 10 Si 1.013 2.987 11 H -0.256 1.256 12 H -0.260 1.260 13 H -0.253 1.253 14 N -0.628 5.628 15 C 0.013 3.987 16 C -0.021 4.021 17 C -0.084 4.084 18 C -0.137 4.137 19 C -0.135 4.135 20 H 0.089 0.911 21 H 0.054 0.946 22 H 0.028 0.972 23 H 0.057 0.943 24 H 0.099 0.901 25 H 0.295 0.705 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.023 0.977 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.640 -5.413 6.331 8.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.048 4.048 3 C -0.262 4.262 4 O -0.104 6.104 5 C 0.122 3.878 6 C -0.503 4.503 7 H 0.125 0.875 8 C -0.191 4.191 9 N -0.443 5.443 10 Si 0.830 3.170 11 H -0.180 1.180 12 H -0.184 1.184 13 H -0.176 1.176 14 N -0.363 5.363 15 C -0.111 4.111 16 C -0.059 4.059 17 C -0.103 4.103 18 C -0.195 4.195 19 C -0.192 4.192 20 H 0.107 0.893 21 H 0.073 0.927 22 H 0.047 0.953 23 H 0.076 0.924 24 H 0.117 0.883 25 H 0.106 0.894 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.520 -5.037 6.507 8.245 hybrid contribution 0.016 0.175 -1.241 1.253 sum -0.505 -4.862 5.266 7.185 Atomic orbital electron populations 1.21711 0.94168 1.02511 1.00944 1.19687 0.96171 0.86291 1.02617 1.23604 1.18903 0.98431 0.85255 1.84735 1.67275 1.23682 1.34713 1.22560 0.92287 0.84417 0.88495 1.18743 1.43184 0.97414 0.90911 0.87486 1.27182 0.91867 1.00621 0.99435 1.69785 1.32742 1.27249 1.14486 0.84759 0.79351 0.76468 0.76412 1.18029 1.18434 1.17597 1.70794 1.33042 1.23699 1.08774 1.21738 1.01831 0.90640 0.96936 1.19974 0.98469 0.99863 0.87579 1.21017 0.93973 0.97189 0.98154 1.21725 0.98533 0.98696 1.00501 1.21767 1.02497 1.01059 0.93876 0.89268 0.92679 0.95288 0.92423 0.88296 0.89383 0.92026 0.89498 0.92334 0.93025 0.91871 0.95810 0.91268 0.91564 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 9.89 71.98 0.71 -3.66 16 2 C -0.01 -0.38 6.11 29.85 0.18 -0.19 16 3 C -0.21 -10.46 6.67 25.15 0.17 -10.29 16 4 O -0.21 -12.78 9.06 -11.86 -0.11 -12.89 16 5 C 0.31 18.87 7.66 84.92 0.65 19.52 16 6 C -0.47 -27.23 9.45 23.16 0.22 -27.01 16 7 H 0.11 5.98 7.85 -2.91 -0.02 5.96 16 8 C 0.03 1.43 5.50 85.38 0.47 1.90 16 9 N -0.81 -44.94 11.98 21.89 0.26 -44.68 16 10 Si 1.01 38.68 29.56 68.60 2.03 40.71 16 11 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 12 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 13 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 14 N -0.63 -36.20 10.66 -297.41 -3.17 -39.37 16 15 C 0.01 0.62 5.56 41.84 0.23 0.86 16 16 C -0.02 -0.77 4.87 29.85 0.15 -0.62 16 17 C -0.08 -2.66 2.91 -10.79 -0.03 -2.69 16 18 C -0.14 -4.80 9.01 71.98 0.65 -4.15 16 19 C -0.13 -3.01 9.19 71.98 0.66 -2.35 16 20 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 21 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.10 3.06 7.82 -2.39 -0.02 3.04 16 25 H 0.30 14.42 8.29 -92.71 -0.77 13.65 16 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.09 2.71 7.81 -2.39 -0.02 2.69 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 1.73 8.14 -2.38 -0.02 1.72 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.02 1.03 6.83 -2.39 -0.02 1.01 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -69.93 287.56 4.13 -65.80 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 1.06 Total: 19.13 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 4.06 Total: -28.70 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -2.91 Total: -84.05 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.11 Total: -12.89 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -69.93 4.13 -65.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260739426.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.495 kcal (2) G-P(sol) polarization free energy of solvation -69.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds