Wall clock time and date at job start Mon Mar 30 2020 02:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.95137 * 300.69967 * 9 7 2 11 11 C 1.54846 * 111.07930 * 176.62953 * 9 7 2 12 12 N 1.47666 * 101.86553 * 218.80367 * 11 9 7 13 13 C 1.28634 * 108.56292 * 14.89775 * 12 11 9 14 14 C 1.50695 * 122.94160 * 180.44185 * 13 12 11 15 15 C 1.52999 * 109.47318 * 94.99793 * 14 13 12 16 16 C 1.52999 * 109.47189 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.47120 * 60.00604 * 16 15 14 18 18 C 1.52999 * 109.46597 * 299.99759 * 17 16 15 19 19 C 1.52999 * 109.47189 * 60.00283 * 18 17 16 20 20 O 1.34598 * 114.12189 * 0.44524 * 13 12 11 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09009 * 110.94297 * 336.92969 * 11 9 7 23 23 H 1.09005 * 110.94601 * 100.62488 * 11 9 7 24 24 H 1.09000 * 109.47505 * 215.00303 * 14 13 12 25 25 H 1.09000 * 109.47249 * 300.00667 * 15 14 13 26 26 H 1.09005 * 109.46790 * 60.00717 * 15 14 13 27 27 H 1.08993 * 109.47374 * 300.00190 * 16 15 14 28 28 H 1.09001 * 109.47016 * 180.02562 * 16 15 14 29 29 H 1.09000 * 109.46837 * 179.97438 * 17 16 15 30 30 H 1.09000 * 109.46969 * 59.99499 * 17 16 15 31 31 H 1.09000 * 109.47249 * 299.99568 * 18 17 16 32 32 H 1.09005 * 109.46790 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47016 * 179.97438 * 19 18 17 34 34 H 1.08993 * 109.47374 * 59.99810 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6064 -2.5770 0.8750 11 6 2.2216 -3.7026 -0.0861 12 7 1.4899 -4.6196 -0.9829 13 6 0.5497 -3.9611 -1.5635 14 6 -0.4059 -4.5897 -2.5445 15 6 -1.6803 -5.0164 -1.8132 16 6 -2.6508 -5.6540 -2.8094 17 6 -1.9943 -6.8799 -3.4476 18 6 -0.7200 -6.4532 -4.1789 19 6 0.2505 -5.8155 -3.1827 20 8 0.4943 -2.6613 -1.2181 21 1 -0.4850 0.8401 0.0004 22 1 3.1736 -3.4049 -0.5259 23 1 2.3713 -4.1531 0.8951 24 1 -0.6572 -3.8670 -3.3209 25 1 -1.4289 -5.7390 -1.0368 26 1 -2.1483 -4.1430 -1.3590 27 1 -2.9020 -4.9311 -3.5854 28 1 -3.5588 -5.9577 -2.2884 29 1 -2.6859 -7.3344 -4.1570 30 1 -1.7431 -7.6029 -2.6715 31 1 -0.9712 -5.7302 -4.9550 32 1 -0.2520 -7.3266 -4.6333 33 1 1.1586 -5.5119 -3.7037 34 1 0.5018 -6.5385 -2.4068 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260749951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:31 Heat of formation + Delta-G solvation = -44.909182 kcal Electronic energy + Delta-G solvation = -15551.610507 eV Core-core repulsion = 13062.716849 eV Total energy + Delta-G solvation = -2488.893658 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.88584 -37.93547 -33.07852 -32.24218 -31.31199 -30.53189 -28.40669 -24.84092 -22.78900 -22.32455 -21.19905 -19.84706 -18.54614 -16.81455 -15.74695 -15.03983 -14.87648 -14.62910 -14.06795 -13.92977 -13.46672 -12.88149 -12.42451 -12.10774 -12.00268 -11.84618 -11.64694 -11.21252 -10.98433 -10.92265 -10.90447 -10.62624 -10.32032 -10.10271 -9.95138 -9.87539 -9.47076 -8.86563 -8.73895 -7.76809 -6.21953 -4.37710 3.16728 3.21861 3.28263 3.32426 4.27017 4.35189 4.88818 4.93585 5.02076 5.22044 5.29361 5.45215 5.59674 5.67890 5.70171 5.77753 5.82051 5.94766 6.16337 6.19127 6.22427 6.28630 6.35525 6.39806 6.42815 6.55423 6.59365 6.72119 6.94770 7.36372 7.61896 7.68973 8.06526 8.67509 9.02168 9.35549 10.85634 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.047228 B = 0.006796 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.726380 B = 4119.193136 C = 4378.678967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.078 3.922 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.535 4.535 8 H 0.070 0.930 9 C 0.183 3.817 10 H 0.048 0.952 11 C -0.001 4.001 12 N -0.580 5.580 13 C 0.293 3.707 14 C -0.012 4.012 15 C -0.109 4.109 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.101 4.101 20 O -0.328 6.328 21 H 0.266 0.734 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.981 -9.690 -5.783 11.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.130 4.130 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.208 1.208 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.128 3.872 10 H 0.066 0.934 11 C -0.131 4.131 12 N -0.320 5.320 13 C 0.067 3.933 14 C -0.032 4.032 15 C -0.147 4.147 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.157 4.157 19 C -0.139 4.139 20 O -0.229 6.229 21 H 0.076 0.924 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.106 0.894 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.835 -10.145 -5.769 12.285 hybrid contribution 0.423 1.762 0.302 1.837 sum -3.411 -8.384 -5.467 10.574 Atomic orbital electron populations 1.70022 1.06228 1.27296 1.46064 1.25162 0.94920 0.99836 0.93049 0.86449 0.79942 0.82419 0.78379 1.20187 1.19515 1.20825 1.20998 0.92909 0.89211 1.54055 0.91195 1.21696 0.88219 0.94521 0.82734 0.93388 1.23979 0.99451 0.92568 0.97086 1.74518 1.09742 1.31515 1.16229 1.25435 0.91786 0.83538 0.92508 1.19789 0.92231 0.96542 0.94604 1.21507 0.94210 1.01047 0.97953 1.21520 0.97861 0.97343 0.98626 1.21558 0.96865 0.97766 0.99555 1.21568 0.95847 1.00228 0.98035 1.21407 0.97528 0.96479 0.98455 1.87379 1.70721 1.21807 1.43008 0.92445 0.90854 0.90897 0.89364 0.91568 0.91085 0.91837 0.91954 0.92393 0.91979 0.92079 0.92058 0.91846 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.21 13.10 55.43 0.73 -24.48 16 2 C 0.08 2.18 5.44 -17.82 -0.10 2.08 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -15.13 8.83 -34.44 -0.30 -15.43 16 8 H 0.07 1.91 7.64 -52.49 -0.40 1.51 16 9 C 0.18 4.93 3.53 -26.91 -0.09 4.83 16 10 H 0.05 1.37 8.14 -51.93 -0.42 0.94 16 11 C 0.00 -0.03 7.69 -2.43 -0.02 -0.05 16 12 N -0.58 -13.13 10.86 -56.94 -0.62 -13.74 16 13 C 0.29 6.56 6.81 -13.62 -0.09 6.46 16 14 C -0.01 -0.21 2.66 -91.77 -0.24 -0.45 16 15 C -0.11 -1.66 5.19 -26.73 -0.14 -1.80 16 16 C -0.12 -1.38 5.92 -26.73 -0.16 -1.53 16 17 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 18 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 19 C -0.10 -1.49 4.77 -26.73 -0.13 -1.61 16 20 O -0.33 -8.83 10.64 -15.57 -0.17 -9.00 16 21 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 22 H 0.07 1.73 7.79 -51.92 -0.40 1.32 16 23 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 24 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.18 7.92 -51.93 -0.41 0.77 16 LS Contribution 277.49 15.07 4.18 4.18 Total: -1.00 -30.43 277.49 -7.91 -38.34 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.42 Total: -0.89 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -1.59 Total: -10.49 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.11 Total: -38.23 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.17 Total: -9.00 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.43 -7.91 -38.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260749951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.568 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds