Wall clock time and date at job start Mon Mar 30 2020 02:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.95137 * 300.69967 * 9 7 2 11 11 C 1.54846 * 111.07930 * 176.62953 * 9 7 2 12 12 N 1.47666 * 101.86553 * 218.80367 * 11 9 7 13 13 C 1.28634 * 108.56292 * 14.89775 * 12 11 9 14 14 C 1.50695 * 122.94160 * 180.44185 * 13 12 11 15 15 C 1.52999 * 109.47318 * 94.99793 * 14 13 12 16 16 C 1.52999 * 109.47189 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.47120 * 60.00604 * 16 15 14 18 18 C 1.52999 * 109.46597 * 299.99759 * 17 16 15 19 19 C 1.52999 * 109.47189 * 60.00283 * 18 17 16 20 20 O 1.34598 * 114.12189 * 0.44524 * 13 12 11 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09009 * 110.94297 * 336.92969 * 11 9 7 23 23 H 1.09005 * 110.94601 * 100.62488 * 11 9 7 24 24 H 1.09000 * 109.47505 * 215.00303 * 14 13 12 25 25 H 1.09000 * 109.47249 * 300.00667 * 15 14 13 26 26 H 1.09005 * 109.46790 * 60.00717 * 15 14 13 27 27 H 1.08993 * 109.47374 * 300.00190 * 16 15 14 28 28 H 1.09001 * 109.47016 * 180.02562 * 16 15 14 29 29 H 1.09000 * 109.46837 * 179.97438 * 17 16 15 30 30 H 1.09000 * 109.46969 * 59.99499 * 17 16 15 31 31 H 1.09000 * 109.47249 * 299.99568 * 18 17 16 32 32 H 1.09005 * 109.46790 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47016 * 179.97438 * 19 18 17 34 34 H 1.08993 * 109.47374 * 59.99810 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6064 -2.5770 0.8750 11 6 2.2216 -3.7026 -0.0861 12 7 1.4899 -4.6196 -0.9829 13 6 0.5497 -3.9611 -1.5635 14 6 -0.4059 -4.5897 -2.5445 15 6 -1.6803 -5.0164 -1.8132 16 6 -2.6508 -5.6540 -2.8094 17 6 -1.9943 -6.8799 -3.4476 18 6 -0.7200 -6.4532 -4.1789 19 6 0.2505 -5.8155 -3.1827 20 8 0.4943 -2.6613 -1.2181 21 1 -0.4850 0.8401 0.0004 22 1 3.1736 -3.4049 -0.5259 23 1 2.3713 -4.1531 0.8951 24 1 -0.6572 -3.8670 -3.3209 25 1 -1.4289 -5.7390 -1.0368 26 1 -2.1483 -4.1430 -1.3590 27 1 -2.9020 -4.9311 -3.5854 28 1 -3.5588 -5.9577 -2.2884 29 1 -2.6859 -7.3344 -4.1570 30 1 -1.7431 -7.6029 -2.6715 31 1 -0.9712 -5.7302 -4.9550 32 1 -0.2520 -7.3266 -4.6333 33 1 1.1586 -5.5119 -3.7037 34 1 0.5018 -6.5385 -2.4068 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260749951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:31 Heat of formation + Delta-G solvation = -66.083170 kcal Electronic energy + Delta-G solvation = -15552.528680 eV Core-core repulsion = 13062.716849 eV Total energy + Delta-G solvation = -2489.811831 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.75349 -39.16993 -35.11749 -34.16697 -32.79772 -31.62206 -30.23541 -26.79934 -24.15850 -23.51062 -23.13824 -21.08267 -20.10663 -18.95462 -17.40917 -16.97412 -16.65880 -16.14197 -15.44594 -15.02605 -14.93211 -14.44146 -14.02549 -13.79322 -13.55278 -13.30534 -13.09167 -12.99735 -12.81248 -12.47756 -12.18098 -12.00817 -11.84790 -11.61760 -11.34727 -11.16824 -10.95694 -10.84537 -10.80617 -9.74298 -8.34992 -6.60421 1.35103 1.37090 1.40118 1.50778 2.30550 2.61960 3.10748 3.44193 3.83373 3.90503 4.04785 4.18303 4.31687 4.37916 4.41325 4.46966 4.61367 4.62984 4.66258 4.74466 4.87886 5.06626 5.16675 5.22419 5.27142 5.31510 5.33379 5.40920 5.46138 5.51990 5.62064 5.72579 5.99423 6.52611 7.07921 7.19588 8.73871 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.047228 B = 0.006796 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.726380 B = 4119.193136 C = 4378.678967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.277 1.277 7 C -0.561 4.561 8 H 0.074 0.926 9 C 0.176 3.824 10 H 0.020 0.980 11 C 0.005 3.995 12 N -0.578 5.578 13 C 0.284 3.716 14 C -0.013 4.013 15 C -0.105 4.105 16 C -0.110 4.110 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.094 4.094 20 O -0.357 6.357 21 H 0.270 0.730 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.059 -10.314 -6.977 13.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.202 1.202 7 C -0.598 4.598 8 H 0.092 0.908 9 C 0.121 3.879 10 H 0.037 0.963 11 C -0.124 4.124 12 N -0.317 5.317 13 C 0.059 3.941 14 C -0.032 4.032 15 C -0.143 4.143 16 C -0.147 4.147 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.132 4.132 20 O -0.260 6.260 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.904 -10.799 -6.960 13.428 hybrid contribution 0.427 1.904 0.695 2.072 sum -3.477 -8.895 -6.264 11.421 Atomic orbital electron populations 1.70145 1.07940 1.28507 1.46841 1.26119 0.95823 1.03760 0.92189 0.85285 0.78480 0.77271 0.78994 1.18840 1.18848 1.20250 1.21337 0.93338 0.90283 1.54795 0.90815 1.21584 0.88399 0.95855 0.82071 0.96261 1.23919 0.98693 0.91558 0.98279 1.74517 1.09938 1.30944 1.16290 1.26427 0.92447 0.82104 0.93093 1.20086 0.92115 0.97393 0.93652 1.21492 0.93967 1.00184 0.98683 1.21514 0.97422 0.97867 0.97946 1.21564 0.96815 0.97057 0.99990 1.21559 0.95409 1.00889 0.97221 1.21371 0.98015 0.95006 0.98763 1.87306 1.71142 1.24477 1.43041 0.92110 0.90802 0.89188 0.89163 0.92178 0.93396 0.91207 0.90338 0.89750 0.91965 0.91263 0.90085 0.92753 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.75 13.10 21.45 0.28 -53.47 16 2 C 0.02 1.41 5.44 84.66 0.46 1.87 16 3 Si 0.98 43.39 29.54 68.60 2.03 45.42 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.56 -32.35 8.83 25.60 0.23 -32.13 16 8 H 0.07 4.07 7.64 -2.91 -0.02 4.05 16 9 C 0.18 9.79 3.53 30.48 0.11 9.90 16 10 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 11 C 0.00 0.23 7.69 86.79 0.67 0.90 16 12 N -0.58 -26.38 10.86 -449.28 -4.88 -31.26 16 13 C 0.28 12.98 6.81 88.58 0.60 13.58 16 14 C -0.01 -0.44 2.66 -11.54 -0.03 -0.47 16 15 C -0.10 -3.17 5.19 30.59 0.16 -3.01 16 16 C -0.11 -2.36 5.92 30.60 0.18 -2.18 16 17 C -0.12 -2.12 5.92 30.60 0.18 -1.94 16 18 C -0.11 -2.27 5.92 30.59 0.18 -2.09 16 19 C -0.09 -2.64 4.77 30.60 0.15 -2.50 16 20 O -0.36 -19.89 10.64 -78.63 -0.84 -20.73 16 21 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 22 H 0.07 3.50 7.79 -2.38 -0.02 3.48 16 23 H 0.09 3.92 8.14 -2.38 -0.02 3.90 16 24 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.98 7.92 -2.39 -0.02 1.96 16 Total: -1.00 -66.34 277.49 0.53 -65.81 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.06 Total: 12.29 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 2.88 Total: -18.06 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -4.60 Total: -84.73 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.84 Total: -20.73 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -66.34 0.53 -65.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260749951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.274 kcal (2) G-P(sol) polarization free energy of solvation -66.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds