Wall clock time and date at job start Mon Mar 30 2020 02:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99606 * 2 1 4 4 H 1.48495 * 109.46982 * 269.99794 * 3 2 1 5 5 H 1.48504 * 109.47060 * 30.00014 * 3 2 1 6 6 H 1.48498 * 109.47213 * 149.99884 * 3 2 1 7 7 C 1.37879 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99664 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00215 * 180.02562 * 7 2 1 10 10 H 1.09004 * 110.89401 * 62.44382 * 9 7 2 11 11 C 1.54940 * 110.89106 * 186.56061 * 9 7 2 12 12 C 1.51679 * 102.39528 * 142.25695 * 11 9 7 13 13 C 1.50712 * 125.76738 * 164.60745 * 12 11 9 14 14 C 1.52997 * 109.46964 * 294.71561 * 13 12 11 15 15 C 1.52999 * 109.46991 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.46626 * 60.00378 * 15 14 13 17 17 C 1.52997 * 109.47127 * 299.99539 * 16 15 14 18 18 C 1.52996 * 109.47086 * 174.71669 * 13 12 11 19 19 N 1.27641 * 108.47007 * 344.34269 * 12 11 9 20 20 O 1.41382 * 113.16387 * 359.94059 * 19 12 11 21 21 H 0.97000 * 120.00686 * 0.02562 * 1 2 3 22 22 H 1.08998 * 110.94019 * 23.99247 * 11 9 7 23 23 H 1.08997 * 110.74757 * 260.43235 * 11 9 7 24 24 H 1.09000 * 109.46559 * 54.71719 * 13 12 11 25 25 H 1.09002 * 109.47153 * 60.00001 * 14 13 12 26 26 H 1.08993 * 109.47194 * 300.00289 * 14 13 12 27 27 H 1.08993 * 109.47839 * 300.00447 * 15 14 13 28 28 H 1.09000 * 109.47160 * 180.02562 * 15 14 13 29 29 H 1.09001 * 109.46801 * 59.99811 * 16 15 14 30 30 H 1.09001 * 109.46998 * 179.97438 * 16 15 14 31 31 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 32 32 H 1.08996 * 109.46952 * 300.00302 * 17 16 15 33 33 H 1.08996 * 109.47452 * 59.99790 * 18 13 12 34 34 H 1.09000 * 109.47054 * 299.99950 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4463 2.6527 0.7001 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8999 -0.7226 0.9040 11 6 4.0642 -2.6320 -0.1637 12 6 5.2751 -2.4157 -1.0512 13 6 6.3875 -3.4064 -1.2803 14 6 7.1473 -3.6316 0.0284 15 6 8.2763 -4.6378 -0.2040 16 6 9.2358 -4.0918 -1.2633 17 6 8.4760 -3.8665 -2.5721 18 6 7.3469 -2.8599 -2.3394 19 7 5.1900 -1.2552 -1.5756 20 8 4.0292 -0.5506 -1.1817 21 1 -0.4851 0.8400 -0.0004 22 1 3.3344 -3.2759 -0.6546 23 1 4.3598 -3.0450 0.8007 24 1 5.9672 -4.3516 -1.6238 25 1 6.4638 -4.0209 0.7830 26 1 7.5675 -2.6864 0.3719 27 1 7.8558 -5.5829 -0.5473 28 1 8.8173 -4.7986 0.7285 29 1 9.6564 -3.1466 -0.9200 30 1 10.0404 -4.8083 -1.4286 31 1 9.1597 -3.4779 -3.3269 32 1 8.0555 -4.8117 -2.9153 33 1 7.7672 -1.9147 -1.9960 34 1 6.8056 -2.6994 -3.2718 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260756967.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:39 Heat of formation + Delta-G solvation = -10.374406 kcal Electronic energy + Delta-G solvation = -15458.045736 eV Core-core repulsion = 12970.649619 eV Total energy + Delta-G solvation = -2487.396118 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.51155 -37.94230 -33.25533 -32.46995 -30.88183 -29.89775 -29.56026 -25.44350 -23.23248 -22.53369 -20.81440 -19.94335 -18.80795 -17.02763 -15.84814 -15.09228 -14.95336 -14.45739 -14.20591 -14.03016 -13.72606 -12.91282 -12.68912 -12.39755 -12.25231 -12.13892 -11.84192 -11.36917 -11.16306 -11.03427 -10.88675 -10.53656 -10.44815 -10.30001 -10.05852 -9.86185 -9.67521 -9.49507 -8.71559 -8.28588 -6.22330 -4.33679 2.60349 3.30976 3.42405 3.53124 4.09047 4.43234 4.54881 4.71605 4.75205 4.97898 5.09545 5.21128 5.31192 5.41819 5.45632 5.49200 5.59566 5.71117 5.78085 5.86652 5.94033 5.98908 6.05210 6.08033 6.14653 6.17930 6.34397 6.44894 6.50127 6.75623 7.06185 7.41870 8.27114 8.42617 8.75241 9.38300 10.87540 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.057548 B = 0.006590 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.432884 B = 4247.536771 C = 4414.671418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.087 3.913 3 Si 0.893 3.107 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.084 0.916 9 C 0.138 3.862 10 H 0.046 0.954 11 C -0.132 4.132 12 C 0.061 3.939 13 C -0.012 4.012 14 C -0.111 4.111 15 C -0.117 4.117 16 C -0.121 4.121 17 C -0.119 4.119 18 C -0.111 4.111 19 N -0.308 5.308 20 O -0.211 6.211 21 H 0.269 0.731 22 H 0.092 0.908 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.458 -9.061 -0.851 18.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.119 4.119 3 Si 0.720 3.280 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.102 0.898 9 C 0.081 3.919 10 H 0.064 0.936 11 C -0.171 4.171 12 C -0.133 4.133 13 C -0.032 4.032 14 C -0.150 4.150 15 C -0.154 4.154 16 C -0.159 4.159 17 C -0.156 4.156 18 C -0.148 4.148 19 N -0.048 5.048 20 O -0.232 6.232 21 H 0.079 0.921 22 H 0.111 0.889 23 H 0.098 0.902 24 H 0.109 0.891 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.642 -8.027 -1.610 18.547 hybrid contribution -0.271 0.343 0.612 0.752 sum 16.371 -7.684 -0.998 18.112 Atomic orbital electron populations 1.69892 1.06476 1.27751 1.48058 1.25018 0.94801 0.99748 0.92291 0.86511 0.79702 0.82361 0.79392 1.19473 1.21769 1.19007 1.20875 0.86690 0.95317 1.53394 0.89761 1.21822 0.96532 0.87401 0.86108 0.93634 1.23039 0.93741 1.01262 0.99062 1.26028 0.96298 0.93909 0.97085 1.19734 0.91214 0.95707 0.96526 1.21551 0.97174 0.99912 0.96326 1.21521 0.96485 0.98569 0.98847 1.21565 0.97767 1.01033 0.95514 1.21560 0.97425 0.99456 0.97190 1.21500 0.95839 0.98761 0.98725 1.77442 1.04279 1.06241 1.16809 1.91272 1.35131 1.50516 1.46237 0.92135 0.88947 0.90240 0.89126 0.91261 0.91602 0.91813 0.91885 0.91998 0.92254 0.92004 0.91992 0.91311 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.96 55.43 0.77 -26.36 16 2 C 0.09 2.58 5.47 -17.82 -0.10 2.49 16 3 Si 0.89 23.40 26.36 -169.99 -4.48 18.92 16 4 H -0.27 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.27 -6.84 6.62 56.52 0.37 -6.47 16 7 C -0.52 -15.14 9.40 -34.44 -0.32 -15.47 16 8 H 0.08 2.54 7.91 -52.49 -0.42 2.12 16 9 C 0.14 3.47 2.99 -26.86 -0.08 3.39 16 10 H 0.05 1.15 7.42 -51.93 -0.39 0.77 16 11 C -0.13 -2.65 6.60 -26.38 -0.17 -2.82 16 12 C 0.06 1.12 6.42 -78.57 -0.50 0.62 16 13 C -0.01 -0.17 2.64 -91.77 -0.24 -0.41 16 14 C -0.11 -1.27 5.18 -26.73 -0.14 -1.41 16 15 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 16 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 17 C -0.12 -1.16 5.92 -26.71 -0.16 -1.32 16 18 C -0.11 -1.41 4.68 -26.71 -0.13 -1.54 16 19 N -0.31 -6.88 11.71 35.65 0.42 -6.47 16 20 O -0.21 -5.60 10.16 -11.36 -0.12 -5.72 16 21 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 22 H 0.09 1.88 7.82 -51.93 -0.41 1.47 16 23 H 0.08 1.36 7.84 -51.93 -0.41 0.96 16 24 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.07 0.77 7.84 -51.93 -0.41 0.36 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 272.72 15.07 4.11 4.11 Total: -1.00 -31.97 272.72 -6.87 -38.83 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -5.41 Total: -4.39 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -2.16 Total: -18.92 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 1.19 Total: -32.83 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.12 Total: -5.72 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -4.48 Total: 18.92 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.97 -6.87 -38.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260756967.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.457 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds