Wall clock time and date at job start Mon Mar 30 2020 02:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99606 * 2 1 4 4 H 1.48495 * 109.46982 * 269.99794 * 3 2 1 5 5 H 1.48504 * 109.47060 * 30.00014 * 3 2 1 6 6 H 1.48498 * 109.47213 * 149.99884 * 3 2 1 7 7 C 1.37879 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99664 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00215 * 180.02562 * 7 2 1 10 10 H 1.09004 * 110.89401 * 62.44382 * 9 7 2 11 11 C 1.54940 * 110.89106 * 186.56061 * 9 7 2 12 12 C 1.51679 * 102.39528 * 142.25695 * 11 9 7 13 13 C 1.50712 * 125.76738 * 164.60745 * 12 11 9 14 14 C 1.52997 * 109.46964 * 294.71561 * 13 12 11 15 15 C 1.52999 * 109.46991 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.46626 * 60.00378 * 15 14 13 17 17 C 1.52997 * 109.47127 * 299.99539 * 16 15 14 18 18 C 1.52996 * 109.47086 * 174.71669 * 13 12 11 19 19 N 1.27641 * 108.47007 * 344.34269 * 12 11 9 20 20 O 1.41382 * 113.16387 * 359.94059 * 19 12 11 21 21 H 0.97000 * 120.00686 * 0.02562 * 1 2 3 22 22 H 1.08998 * 110.94019 * 23.99247 * 11 9 7 23 23 H 1.08997 * 110.74757 * 260.43235 * 11 9 7 24 24 H 1.09000 * 109.46559 * 54.71719 * 13 12 11 25 25 H 1.09002 * 109.47153 * 60.00001 * 14 13 12 26 26 H 1.08993 * 109.47194 * 300.00289 * 14 13 12 27 27 H 1.08993 * 109.47839 * 300.00447 * 15 14 13 28 28 H 1.09000 * 109.47160 * 180.02562 * 15 14 13 29 29 H 1.09001 * 109.46801 * 59.99811 * 16 15 14 30 30 H 1.09001 * 109.46998 * 179.97438 * 16 15 14 31 31 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 32 32 H 1.08996 * 109.46952 * 300.00302 * 17 16 15 33 33 H 1.08996 * 109.47452 * 59.99790 * 18 13 12 34 34 H 1.09000 * 109.47054 * 299.99950 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4463 2.6527 0.7001 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8999 -0.7226 0.9040 11 6 4.0642 -2.6320 -0.1637 12 6 5.2751 -2.4157 -1.0512 13 6 6.3875 -3.4064 -1.2803 14 6 7.1473 -3.6316 0.0284 15 6 8.2763 -4.6378 -0.2040 16 6 9.2358 -4.0918 -1.2633 17 6 8.4760 -3.8665 -2.5721 18 6 7.3469 -2.8599 -2.3394 19 7 5.1900 -1.2552 -1.5756 20 8 4.0292 -0.5506 -1.1817 21 1 -0.4851 0.8400 -0.0004 22 1 3.3344 -3.2759 -0.6546 23 1 4.3598 -3.0450 0.8007 24 1 5.9672 -4.3516 -1.6238 25 1 6.4638 -4.0209 0.7830 26 1 7.5675 -2.6864 0.3719 27 1 7.8558 -5.5829 -0.5473 28 1 8.8173 -4.7986 0.7285 29 1 9.6564 -3.1466 -0.9200 30 1 10.0404 -4.8083 -1.4286 31 1 9.1597 -3.4779 -3.3269 32 1 8.0555 -4.8117 -2.9153 33 1 7.7672 -1.9147 -1.9960 34 1 6.8056 -2.6994 -3.2718 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260756967.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:39 Heat of formation + Delta-G solvation = -30.513787 kcal Electronic energy + Delta-G solvation = -15458.919046 eV Core-core repulsion = 12970.649619 eV Total energy + Delta-G solvation = -2488.269427 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.04398 -39.09485 -35.16004 -34.19991 -32.06519 -31.47676 -30.79436 -27.45511 -24.32819 -23.48088 -22.63534 -20.90599 -20.25694 -19.09521 -17.36676 -16.86849 -16.27232 -16.07457 -15.16258 -15.12467 -14.98730 -14.82104 -14.36616 -13.85354 -13.43617 -13.21552 -13.12138 -13.02411 -12.98002 -12.24721 -12.04928 -12.02347 -11.91857 -11.71581 -11.45175 -11.33539 -11.05777 -10.99171 -10.87308 -10.13010 -8.50003 -6.64195 1.04383 1.22365 1.32424 1.41370 2.19052 2.42499 2.93381 3.21916 3.73430 3.85301 3.97502 4.03119 4.16433 4.25242 4.38721 4.39979 4.51468 4.62615 4.66180 4.77084 4.80157 4.93632 5.04713 5.20635 5.25257 5.26671 5.30521 5.31201 5.35787 5.46134 5.49708 5.62536 6.00586 6.42779 6.70920 7.11503 8.63704 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.057548 B = 0.006590 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.432884 B = 4247.536771 C = 4414.671418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.039 3.961 3 Si 0.948 3.052 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.130 3.870 10 H 0.043 0.957 11 C -0.129 4.129 12 C 0.094 3.906 13 C -0.012 4.012 14 C -0.109 4.109 15 C -0.111 4.111 16 C -0.121 4.121 17 C -0.113 4.113 18 C -0.110 4.110 19 N -0.338 5.338 20 O -0.255 6.255 21 H 0.274 0.726 22 H 0.091 0.909 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.891 -10.658 -0.513 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.163 4.163 3 Si 0.774 3.226 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.571 4.571 8 H 0.077 0.923 9 C 0.073 3.927 10 H 0.061 0.939 11 C -0.168 4.168 12 C -0.100 4.100 13 C -0.032 4.032 14 C -0.148 4.148 15 C -0.149 4.149 16 C -0.159 4.159 17 C -0.150 4.150 18 C -0.148 4.148 19 N -0.082 5.082 20 O -0.271 6.271 21 H 0.083 0.917 22 H 0.109 0.891 23 H 0.134 0.866 24 H 0.134 0.866 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 19.055 -9.613 -1.256 21.379 hybrid contribution -0.974 0.690 0.479 1.286 sum 18.081 -8.923 -0.778 20.178 Atomic orbital electron populations 1.69977 1.07732 1.28813 1.49754 1.25750 0.95464 1.02834 0.92259 0.85649 0.78917 0.79259 0.78766 1.20680 1.19929 1.18515 1.21125 0.88991 0.94311 1.52671 0.92286 1.21708 0.94371 0.90622 0.85982 0.93904 1.23010 0.94074 0.98365 1.01347 1.26849 0.96158 0.93237 0.93750 1.20073 0.89901 0.94921 0.98267 1.21578 0.97973 1.00325 0.94920 1.21514 0.95559 0.98131 0.99676 1.21583 0.98161 1.01314 0.94812 1.21532 0.96417 0.98956 0.98112 1.21482 0.96606 0.99096 0.97581 1.77521 1.03326 1.08183 1.19177 1.91191 1.37346 1.52089 1.46504 0.91674 0.89058 0.86619 0.86623 0.90466 0.92821 0.90419 0.90458 0.92711 0.90282 0.91308 0.90653 0.93061 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.88 13.96 21.45 0.30 -57.58 16 2 C 0.04 2.35 5.47 84.66 0.46 2.81 16 3 Si 0.95 49.11 26.36 68.60 1.81 50.91 16 4 H -0.28 -14.94 7.11 99.48 0.71 -14.24 16 5 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.26 -13.15 6.62 99.48 0.66 -12.49 16 7 C -0.53 -31.39 9.40 25.60 0.24 -31.15 16 8 H 0.06 3.67 7.91 -2.91 -0.02 3.64 16 9 C 0.13 6.55 2.99 30.51 0.09 6.64 16 10 H 0.04 2.17 7.42 -2.38 -0.02 2.15 16 11 C -0.13 -4.99 6.60 30.82 0.20 -4.79 16 12 C 0.09 3.32 6.42 46.90 0.30 3.62 16 13 C -0.01 -0.30 2.64 -11.54 -0.03 -0.33 16 14 C -0.11 -2.13 5.18 30.59 0.16 -1.97 16 15 C -0.11 -1.54 5.92 30.60 0.18 -1.35 16 16 C -0.12 -1.70 5.92 30.60 0.18 -1.52 16 17 C -0.11 -1.83 5.92 30.61 0.18 -1.65 16 18 C -0.11 -2.59 4.68 30.61 0.14 -2.45 16 19 N -0.34 -15.02 11.71 -40.61 -0.48 -15.50 16 20 O -0.25 -13.66 10.16 -38.30 -0.39 -14.05 16 21 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 22 H 0.09 3.61 7.82 -2.39 -0.02 3.59 16 23 H 0.12 3.63 7.84 -2.39 -0.02 3.61 16 24 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.08 1.40 7.84 -2.39 -0.02 1.38 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -70.70 272.72 4.37 -66.33 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: 1.01 Total: 2.01 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 2.11 Total: -32.13 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -0.18 Total: -73.08 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.39 Total: -14.05 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 1.81 Total: 50.91 kcal Total: -70.70 4.37 -66.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260756967.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.821 kcal (2) G-P(sol) polarization free energy of solvation -70.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds