Wall clock time and date at job start Mon Mar 30 2020 02:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00225 * 2 1 4 4 H 1.48493 * 109.46971 * 0.02562 * 3 2 1 5 5 H 1.48493 * 109.47132 * 240.00136 * 3 2 1 6 6 H 1.48503 * 109.46904 * 120.00190 * 3 2 1 7 7 C 1.37878 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00205 * 342.27566 * 7 2 1 9 9 C 1.50707 * 120.00223 * 162.28137 * 7 2 1 10 10 H 1.09001 * 109.48600 * 54.47402 * 9 7 2 11 11 C 1.53043 * 109.48468 * 294.43766 * 9 7 2 12 12 C 1.53055 * 109.33580 * 179.40022 * 11 9 7 13 13 C 1.53069 * 109.28993 * 61.57504 * 12 11 9 14 14 N 1.47730 * 108.72855 * 304.59603 * 13 12 11 15 15 C 1.34083 * 117.84615 * 233.65526 * 14 13 12 16 16 O 1.21287 * 118.74868 * 1.56281 * 15 14 13 17 17 C 1.50311 * 122.49329 * 181.53993 * 15 14 13 18 18 C 1.53310 * 108.49017 * 25.74840 * 17 15 14 19 19 C 1.52791 * 108.18430 * 303.86435 * 18 17 15 20 20 C 1.45687 * 118.12429 * 53.82934 * 14 13 12 21 21 H 1.09005 * 108.07940 * 64.18433 * 20 14 13 22 22 H 0.96998 * 120.00312 * 174.62307 * 1 2 3 23 23 H 1.09001 * 109.49127 * 299.35972 * 11 9 7 24 24 H 1.09002 * 109.49234 * 59.41119 * 11 9 7 25 25 H 1.09001 * 109.50277 * 181.52292 * 12 11 9 26 26 H 1.09001 * 109.49847 * 301.63353 * 12 11 9 27 27 H 1.09002 * 109.59760 * 64.37491 * 13 12 11 28 28 H 1.09007 * 109.59302 * 184.82718 * 13 12 11 29 29 H 1.08995 * 109.63474 * 145.45712 * 17 15 14 30 30 H 1.09006 * 109.63345 * 266.04851 * 17 15 14 31 31 H 1.08996 * 109.72171 * 63.53859 * 18 17 15 32 32 H 1.08996 * 109.71629 * 184.14916 * 18 17 15 33 33 H 1.09005 * 109.14870 * 183.64853 * 19 18 17 34 34 H 1.09009 * 109.15244 * 302.80668 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 1.5029 -2.1073 0.2838 9 6 3.4579 -1.2250 -0.3978 10 1 4.0168 -0.5155 0.2125 11 6 3.5918 -0.8449 -1.8742 12 6 5.0702 -0.8628 -2.2700 13 6 5.6263 -2.2768 -2.0845 14 7 5.3799 -2.7045 -0.6921 15 6 6.4273 -3.1366 0.0250 16 8 7.5269 -3.1304 -0.4866 17 6 6.2903 -3.6277 1.4390 18 6 4.8610 -4.1456 1.6375 19 6 3.8919 -3.0198 1.2799 20 6 4.0165 -2.6352 -0.1834 21 1 3.4052 -3.3309 -0.7583 22 1 -0.4850 -0.8363 -0.0787 23 1 3.0429 -1.5613 -2.4854 24 1 3.1849 0.1541 -2.0309 25 1 5.1710 -0.5662 -3.3141 26 1 5.6243 -0.1682 -1.6387 27 1 5.1253 -2.9597 -2.7707 28 1 6.6982 -2.2770 -2.2827 29 1 7.0005 -4.4352 1.6166 30 1 6.4824 -2.8083 2.1316 31 1 4.6863 -5.0020 0.9861 32 1 4.7173 -4.4392 2.6773 33 1 2.8720 -3.3497 1.4775 34 1 4.1112 -2.1493 1.8984 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260788581.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:58 Heat of formation + Delta-G solvation = -56.634792 kcal Electronic energy + Delta-G solvation = -16270.619471 eV Core-core repulsion = 13781.217352 eV Total energy + Delta-G solvation = -2489.402119 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.27172 -37.15416 -35.02162 -33.34839 -31.41145 -30.50891 -27.85200 -24.81115 -23.66043 -22.53075 -20.72030 -19.51354 -18.26571 -17.48965 -16.21402 -15.76631 -15.10263 -14.27678 -14.04471 -13.61567 -13.45293 -13.24033 -12.81373 -12.72514 -12.36625 -11.87671 -11.52088 -11.34353 -10.95234 -10.89600 -10.68929 -10.33101 -10.26478 -10.08588 -9.82174 -9.55151 -9.19830 -8.79952 -8.35516 -8.07357 -6.50811 -4.15062 3.00002 3.34449 3.39868 3.46229 3.57016 4.44596 4.89352 5.04815 5.08988 5.17320 5.25976 5.49429 5.59845 5.65499 5.74581 5.85706 5.92684 5.99280 6.03854 6.13429 6.26657 6.34687 6.46829 6.51715 6.64075 6.74221 6.81180 6.98393 7.14633 7.39082 7.90863 8.07045 8.29844 8.55386 8.80866 9.52007 10.86634 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032390 B = 0.010878 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.257358 B = 2573.475405 C = 3005.801045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.037 3.963 3 Si 1.037 2.963 4 H -0.287 1.287 5 H -0.273 1.273 6 H -0.284 1.284 7 C -0.597 4.597 8 H 0.060 0.940 9 C 0.017 3.983 10 H 0.025 0.975 11 C -0.126 4.126 12 C -0.137 4.137 13 C 0.108 3.892 14 N -0.593 5.593 15 C 0.511 3.489 16 O -0.576 6.576 17 C -0.133 4.133 18 C -0.123 4.123 19 C -0.113 4.113 20 C 0.156 3.844 21 H 0.060 0.940 22 H 0.269 0.731 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.349 -4.962 0.438 9.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.169 4.169 3 Si 0.866 3.134 4 H -0.213 1.213 5 H -0.200 1.200 6 H -0.211 1.211 7 C -0.634 4.634 8 H 0.078 0.922 9 C -0.003 4.003 10 H 0.043 0.957 11 C -0.163 4.163 12 C -0.176 4.176 13 C -0.015 4.015 14 N -0.324 5.324 15 C 0.300 3.700 16 O -0.457 6.457 17 C -0.173 4.173 18 C -0.161 4.161 19 C -0.151 4.151 20 C 0.053 3.947 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.657 -3.326 0.266 9.278 hybrid contribution 0.008 -1.616 -0.079 1.618 sum 8.665 -4.942 0.187 9.977 Atomic orbital electron populations 1.70844 1.07142 1.30512 1.45182 1.25665 0.95998 1.02267 0.92926 0.84160 0.75511 0.76374 0.77347 1.21284 1.19956 1.21084 1.21866 0.93888 0.96604 1.51090 0.92208 1.19405 0.97412 0.91072 0.92426 0.95746 1.22114 0.92669 1.02140 0.99418 1.21979 0.98884 0.95944 1.00756 1.21736 1.01894 0.95697 0.82125 1.47981 1.08645 1.62444 1.13366 1.20401 0.83819 0.77223 0.88530 1.90626 1.25672 1.57537 1.71851 1.21728 0.99115 1.02478 0.93964 1.21628 0.93644 0.98868 1.01966 1.21418 1.00208 0.98061 0.95435 1.20747 0.79370 1.00054 0.94501 0.92187 0.92142 0.92699 0.91674 0.91895 0.92322 0.92017 0.89332 0.88923 0.88624 0.91763 0.90940 0.89743 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 13.70 55.43 0.76 -25.67 16 2 C 0.04 1.01 5.33 -17.82 -0.09 0.91 16 3 Si 1.04 24.24 26.36 -169.99 -4.48 19.76 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.27 -5.93 5.62 56.52 0.32 -5.61 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.60 -15.26 8.19 -34.44 -0.28 -15.54 16 8 H 0.06 1.62 7.37 -52.49 -0.39 1.24 16 9 C 0.02 0.37 1.27 -91.65 -0.12 0.25 16 10 H 0.02 0.56 6.78 -51.93 -0.35 0.21 16 11 C -0.13 -2.58 4.87 -26.68 -0.13 -2.71 16 12 C -0.14 -2.41 6.07 -26.67 -0.16 -2.57 16 13 C 0.11 1.86 6.32 -3.33 -0.02 1.83 16 14 N -0.59 -10.82 2.96 -166.61 -0.49 -11.31 16 15 C 0.51 9.22 7.47 -11.48 -0.09 9.14 16 16 O -0.58 -11.90 16.06 5.55 0.09 -11.81 16 17 C -0.13 -1.88 6.07 -27.91 -0.17 -2.05 16 18 C -0.12 -1.66 6.04 -26.68 -0.16 -1.82 16 19 C -0.11 -1.91 4.69 -27.44 -0.13 -2.03 16 20 C 0.16 2.96 2.39 -68.87 -0.16 2.79 16 21 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 22 H 0.27 7.80 8.73 -40.82 -0.36 7.44 16 23 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 24 H 0.06 1.42 4.81 -51.93 -0.25 1.17 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.09 1.54 6.68 -51.92 -0.35 1.19 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.46 7.52 -51.93 -0.39 1.07 16 34 H 0.07 1.24 7.93 -51.92 -0.41 0.82 16 LS Contribution 260.72 15.07 3.93 3.93 Total: -1.00 -29.34 260.72 -6.89 -36.23 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.18 Total: 0.67 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -1.52 Total: -11.81 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.27 Total: -36.98 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -4.48 Total: 19.76 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.34 -6.89 -36.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260788581.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.401 kcal (2) G-P(sol) polarization free energy of solvation -29.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds