Wall clock time and date at job start Mon Mar 30 2020 02:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00225 * 2 1 4 4 H 1.48493 * 109.46971 * 0.02562 * 3 2 1 5 5 H 1.48493 * 109.47132 * 240.00136 * 3 2 1 6 6 H 1.48503 * 109.46904 * 120.00190 * 3 2 1 7 7 C 1.37878 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00205 * 342.27566 * 7 2 1 9 9 C 1.50707 * 120.00223 * 162.28137 * 7 2 1 10 10 H 1.09001 * 109.48600 * 54.47402 * 9 7 2 11 11 C 1.53043 * 109.48468 * 294.43766 * 9 7 2 12 12 C 1.53055 * 109.33580 * 179.40022 * 11 9 7 13 13 C 1.53069 * 109.28993 * 61.57504 * 12 11 9 14 14 N 1.47730 * 108.72855 * 304.59603 * 13 12 11 15 15 C 1.34083 * 117.84615 * 233.65526 * 14 13 12 16 16 O 1.21287 * 118.74868 * 1.56281 * 15 14 13 17 17 C 1.50311 * 122.49329 * 181.53993 * 15 14 13 18 18 C 1.53310 * 108.49017 * 25.74840 * 17 15 14 19 19 C 1.52791 * 108.18430 * 303.86435 * 18 17 15 20 20 C 1.45687 * 118.12429 * 53.82934 * 14 13 12 21 21 H 1.09005 * 108.07940 * 64.18433 * 20 14 13 22 22 H 0.96998 * 120.00312 * 174.62307 * 1 2 3 23 23 H 1.09001 * 109.49127 * 299.35972 * 11 9 7 24 24 H 1.09002 * 109.49234 * 59.41119 * 11 9 7 25 25 H 1.09001 * 109.50277 * 181.52292 * 12 11 9 26 26 H 1.09001 * 109.49847 * 301.63353 * 12 11 9 27 27 H 1.09002 * 109.59760 * 64.37491 * 13 12 11 28 28 H 1.09007 * 109.59302 * 184.82718 * 13 12 11 29 29 H 1.08995 * 109.63474 * 145.45712 * 17 15 14 30 30 H 1.09006 * 109.63345 * 266.04851 * 17 15 14 31 31 H 1.08996 * 109.72171 * 63.53859 * 18 17 15 32 32 H 1.08996 * 109.71629 * 184.14916 * 18 17 15 33 33 H 1.09005 * 109.14870 * 183.64853 * 19 18 17 34 34 H 1.09009 * 109.15244 * 302.80668 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 1.5029 -2.1073 0.2838 9 6 3.4579 -1.2250 -0.3978 10 1 4.0168 -0.5155 0.2125 11 6 3.5918 -0.8449 -1.8742 12 6 5.0702 -0.8628 -2.2700 13 6 5.6263 -2.2768 -2.0845 14 7 5.3799 -2.7045 -0.6921 15 6 6.4273 -3.1366 0.0250 16 8 7.5269 -3.1304 -0.4866 17 6 6.2903 -3.6277 1.4390 18 6 4.8610 -4.1456 1.6375 19 6 3.8919 -3.0198 1.2799 20 6 4.0165 -2.6352 -0.1834 21 1 3.4052 -3.3309 -0.7583 22 1 -0.4850 -0.8363 -0.0787 23 1 3.0429 -1.5613 -2.4854 24 1 3.1849 0.1541 -2.0309 25 1 5.1710 -0.5662 -3.3141 26 1 5.6243 -0.1682 -1.6387 27 1 5.1253 -2.9597 -2.7707 28 1 6.6982 -2.2770 -2.2827 29 1 7.0005 -4.4352 1.6166 30 1 6.4824 -2.8083 2.1316 31 1 4.6863 -5.0020 0.9861 32 1 4.7173 -4.4392 2.6773 33 1 2.8720 -3.3497 1.4775 34 1 4.1112 -2.1493 1.8984 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260788581.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:58 Heat of formation + Delta-G solvation = -74.835714 kcal Electronic energy + Delta-G solvation = -16271.408722 eV Core-core repulsion = 13781.217352 eV Total energy + Delta-G solvation = -2490.191370 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.70379 -38.71120 -36.33833 -35.20910 -33.13815 -31.95491 -29.28839 -26.60713 -25.07053 -23.92929 -22.34923 -21.08620 -19.88389 -19.23749 -17.63662 -17.20931 -16.56673 -15.90017 -15.47476 -15.27995 -14.86825 -14.60942 -14.43410 -14.22220 -14.01261 -13.44921 -12.99089 -12.79876 -12.60584 -12.39980 -12.02581 -11.96906 -11.74513 -11.64833 -11.49856 -11.20996 -10.86482 -10.48551 -10.41659 -9.59714 -8.65584 -6.29629 1.47576 1.51516 1.61346 1.71074 2.08051 2.50765 3.08702 3.60614 3.80586 3.91633 3.93076 4.06395 4.20527 4.28829 4.35199 4.52890 4.59508 4.71952 4.80164 4.82580 4.90909 4.98972 5.07170 5.10956 5.14345 5.19339 5.37258 5.44660 5.51584 5.66014 6.04946 6.12804 6.55087 6.66930 7.14683 7.44045 8.70644 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.032390 B = 0.010878 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.257358 B = 2573.475405 C = 3005.801045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.011 4.011 3 Si 1.070 2.930 4 H -0.295 1.295 5 H -0.246 1.246 6 H -0.270 1.270 7 C -0.584 4.584 8 H 0.034 0.966 9 C 0.014 3.986 10 H 0.019 0.981 11 C -0.125 4.125 12 C -0.128 4.128 13 C 0.105 3.895 14 N -0.597 5.597 15 C 0.505 3.495 16 O -0.603 6.603 17 C -0.128 4.128 18 C -0.111 4.111 19 C -0.113 4.113 20 C 0.164 3.836 21 H 0.050 0.950 22 H 0.255 0.745 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.389 -5.317 0.663 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.210 4.210 3 Si 0.893 3.107 4 H -0.222 1.222 5 H -0.171 1.171 6 H -0.196 1.196 7 C -0.622 4.622 8 H 0.052 0.948 9 C -0.006 4.006 10 H 0.037 0.963 11 C -0.163 4.163 12 C -0.166 4.166 13 C -0.017 4.017 14 N -0.328 5.328 15 C 0.296 3.704 16 O -0.486 6.486 17 C -0.167 4.167 18 C -0.148 4.148 19 C -0.151 4.151 20 C 0.060 3.940 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.109 0.891 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.715 -3.702 0.489 11.347 hybrid contribution -0.646 -1.576 -0.160 1.711 sum 10.070 -5.278 0.329 11.374 Atomic orbital electron populations 1.70957 1.08387 1.29744 1.48614 1.26817 0.95933 1.05622 0.92658 0.83752 0.74995 0.72851 0.79083 1.22179 1.17084 1.19578 1.22034 0.95756 0.95238 1.49201 0.94808 1.19372 0.94896 0.93054 0.93290 0.96254 1.22001 0.94997 1.01106 0.98157 1.21900 0.96117 0.96208 1.02394 1.21822 1.02080 0.95756 0.82088 1.48029 1.08328 1.62556 1.13877 1.21122 0.83051 0.76455 0.89816 1.90615 1.26554 1.58690 1.72790 1.21799 0.99923 1.03596 0.91406 1.21569 0.92061 0.97317 1.03892 1.21384 1.00750 0.99232 0.93747 1.20527 0.79710 0.97778 0.95948 0.93196 0.93577 0.93226 0.92949 0.89079 0.92690 0.90818 0.89182 0.86673 0.87298 0.91317 0.87903 0.90899 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.53 13.70 21.45 0.29 -56.23 16 2 C -0.01 -0.63 5.33 84.65 0.45 -0.17 16 3 Si 1.07 48.42 26.36 68.60 1.81 50.23 16 4 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 5 H -0.25 -10.00 5.62 99.48 0.56 -9.44 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.58 -30.24 8.19 25.60 0.21 -30.03 16 8 H 0.03 1.89 7.37 -2.91 -0.02 1.87 16 9 C 0.01 0.59 1.27 -11.46 -0.01 0.58 16 10 H 0.02 0.86 6.78 -2.39 -0.02 0.85 16 11 C -0.12 -4.96 4.87 30.63 0.15 -4.81 16 12 C -0.13 -4.17 6.07 30.64 0.19 -3.98 16 13 C 0.10 3.37 6.32 86.17 0.54 3.91 16 14 N -0.60 -20.59 2.96 -799.82 -2.37 -22.96 16 15 C 0.50 16.93 7.47 87.64 0.65 17.58 16 16 O -0.60 -23.57 16.06 -3.05 -0.05 -23.62 16 17 C -0.13 -3.16 6.07 29.83 0.18 -2.98 16 18 C -0.11 -2.62 6.04 30.63 0.19 -2.44 16 19 C -0.11 -3.64 4.69 30.14 0.14 -3.50 16 20 C 0.16 6.02 2.39 44.82 0.11 6.13 16 21 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 22 H 0.26 15.45 8.73 -92.71 -0.81 14.64 16 23 H 0.05 1.99 8.14 -2.39 -0.02 1.98 16 24 H 0.05 2.20 4.81 -2.39 -0.01 2.19 16 25 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.09 2.92 6.68 -2.38 -0.02 2.90 16 29 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 2.49 7.52 -2.38 -0.02 2.48 16 34 H 0.06 2.11 7.93 -2.38 -0.02 2.09 16 Total: -1.00 -63.37 260.72 3.37 -60.01 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.89 Total: 12.29 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 2.80 Total: -19.72 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -2.08 Total: -79.19 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.05 Total: -23.62 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 1.81 Total: 50.23 kcal Total: -63.37 3.37 -60.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260788581.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.830 kcal (2) G-P(sol) polarization free energy of solvation -63.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds