Wall clock time and date at job start Mon Mar 30 2020 02:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09005 * 109.48659 * 60.23912 * 9 7 2 11 11 C 1.53042 * 109.49419 * 300.17007 * 9 7 2 12 12 C 1.53061 * 109.34622 * 300.64984 * 11 9 7 13 13 C 1.53083 * 109.29227 * 298.43448 * 12 11 9 14 14 N 1.47736 * 108.70148 * 55.41786 * 13 12 11 15 15 C 1.34073 * 117.85032 * 126.43757 * 14 13 12 16 16 O 1.21279 * 118.75316 * 358.23993 * 15 14 13 17 17 C 1.50314 * 122.50370 * 178.26088 * 15 14 13 18 18 C 1.53308 * 108.51269 * 334.36752 * 17 15 14 19 19 C 1.52790 * 108.19098 * 56.05218 * 18 17 15 20 20 C 1.45686 * 118.11479 * 306.10250 * 14 13 12 21 21 H 1.09002 * 108.09391 * 295.90091 * 20 14 13 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.48907 * 60.61035 * 11 9 7 24 24 H 1.09000 * 109.49029 * 180.68690 * 11 9 7 25 25 H 1.08998 * 109.50089 * 178.48871 * 12 11 9 26 26 H 1.08999 * 109.50015 * 58.38019 * 12 11 9 27 27 H 1.08999 * 109.59700 * 295.65800 * 13 12 11 28 28 H 1.08991 * 109.72705 * 175.26087 * 13 12 11 29 29 H 1.08997 * 109.63294 * 94.07147 * 17 15 14 30 30 H 1.09006 * 109.63301 * 214.46292 * 17 15 14 31 31 H 1.08995 * 109.72287 * 175.72951 * 18 17 15 32 32 H 1.09004 * 109.71918 * 296.33750 * 18 17 15 33 33 H 1.09000 * 109.16842 * 176.31316 * 19 18 17 34 34 H 1.09004 * 109.13974 * 57.15097 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6237 -2.5608 -0.8839 11 6 0.3733 -2.5763 1.2566 12 6 1.2563 -2.4744 2.5026 13 6 2.2343 -3.6519 2.5271 14 7 2.9947 -3.6625 1.2605 15 6 4.3333 -3.6772 1.3337 16 8 4.8582 -3.6486 2.4266 17 6 5.2085 -3.7275 0.1126 18 6 4.4184 -4.3831 -1.0259 19 6 3.1254 -3.5939 -1.2254 20 6 2.2464 -3.6638 0.0105 21 1 1.6785 -4.5926 -0.0431 22 1 -0.4850 0.8400 0.0004 23 1 -0.3426 -1.7543 1.2499 24 1 -0.1624 -3.5256 1.2670 25 1 0.6310 -2.5022 3.3950 26 1 1.8143 -1.5384 2.4777 27 1 1.6804 -4.5851 2.6288 28 1 2.9220 -3.5416 3.3655 29 1 5.4941 -2.7157 -0.1752 30 1 6.1025 -4.3134 0.3266 31 1 5.0077 -4.3614 -1.9426 32 1 4.1836 -5.4148 -0.7641 33 1 2.5816 -4.0068 -2.0749 34 1 3.3708 -2.5520 -1.4313 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260788593.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:01 Heat of formation + Delta-G solvation = -53.055134 kcal Electronic energy + Delta-G solvation = -16525.823782 eV Core-core repulsion = 14036.576889 eV Total energy + Delta-G solvation = -2489.246893 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.02721 -36.89007 -34.79754 -33.03103 -30.83350 -30.22531 -27.48603 -25.06316 -23.34723 -22.57383 -21.09212 -19.17660 -18.03250 -16.11896 -15.95685 -15.20893 -15.05668 -14.35650 -13.84177 -13.44067 -13.28069 -12.99407 -12.58819 -12.40918 -12.03547 -11.66283 -11.32711 -11.04339 -10.93297 -10.67631 -10.56573 -10.46308 -10.02428 -9.77518 -9.61924 -9.54776 -8.96869 -8.71280 -8.38588 -7.71006 -6.03244 -4.07490 3.26946 3.30049 3.35114 3.39612 3.77177 4.40450 5.09816 5.23796 5.25133 5.29295 5.42046 5.81837 5.91492 5.98487 6.05384 6.06952 6.11685 6.23180 6.28846 6.41398 6.48898 6.54815 6.70631 6.79745 6.99262 7.09731 7.34472 7.48669 7.59158 7.77084 8.03072 8.30452 8.37601 8.85781 8.92288 9.55788 11.02284 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.012230 C = 0.011177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.651144 B = 2288.954691 C = 2504.518667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.883 3.117 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.497 4.497 8 H 0.054 0.946 9 C 0.036 3.964 10 H 0.038 0.962 11 C -0.111 4.111 12 C -0.119 4.119 13 C 0.110 3.890 14 N -0.573 5.573 15 C 0.514 3.486 16 O -0.581 6.581 17 C -0.132 4.132 18 C -0.119 4.119 19 C -0.128 4.128 20 C 0.152 3.848 21 H 0.042 0.958 22 H 0.260 0.740 23 H 0.095 0.905 24 H 0.016 0.984 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 -6.938 -1.629 8.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.712 3.288 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.017 3.983 10 H 0.056 0.944 11 C -0.149 4.149 12 C -0.157 4.157 13 C -0.013 4.013 14 N -0.303 5.303 15 C 0.303 3.697 16 O -0.463 6.463 17 C -0.172 4.172 18 C -0.157 4.157 19 C -0.166 4.166 20 C 0.049 3.951 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.113 0.887 24 H 0.035 0.965 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.727 -6.798 -1.105 7.831 hybrid contribution 0.332 1.042 -0.054 1.095 sum 4.059 -5.757 -1.159 7.138 Atomic orbital electron populations 1.69849 1.05784 1.26363 1.50865 1.24888 0.94755 0.98805 0.95298 0.86720 0.80079 0.83968 0.78065 1.20731 1.21303 1.20001 1.20961 0.92593 0.90026 1.49953 0.92762 1.19126 0.92313 0.91878 0.94947 0.94358 1.21549 0.98795 0.99672 0.94906 1.21728 0.97355 0.98574 0.98020 1.21737 0.94490 0.98328 0.86712 1.47531 1.04925 1.70204 1.07638 1.20228 0.82893 0.75829 0.90749 1.90606 1.73113 1.53002 1.29542 1.21690 0.98203 1.03471 0.93862 1.21550 0.97056 0.99244 0.97811 1.21596 0.95032 1.02849 0.97119 1.20786 0.92892 0.99352 0.82074 0.94020 0.93049 0.88702 0.96511 0.93584 0.90569 0.93035 0.89876 0.88622 0.89316 0.91289 0.92121 0.91125 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.11 11.33 55.43 0.63 -23.48 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 3 Si 0.88 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.50 -12.50 5.96 -34.44 -0.21 -12.71 16 8 H 0.05 1.40 6.91 -52.49 -0.36 1.04 16 9 C 0.04 0.82 2.14 -91.65 -0.20 0.63 16 10 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.47 5.22 -26.68 -0.14 -2.61 16 12 C -0.12 -2.48 5.84 -26.66 -0.16 -2.64 16 13 C 0.11 2.15 6.32 -3.32 -0.02 2.13 16 14 N -0.57 -11.48 2.70 -166.60 -0.45 -11.93 16 15 C 0.51 10.40 7.47 -11.49 -0.09 10.31 16 16 O -0.58 -13.43 16.06 5.56 0.09 -13.34 16 17 C -0.13 -2.11 6.07 -27.91 -0.17 -2.28 16 18 C -0.12 -1.66 6.04 -26.68 -0.16 -1.82 16 19 C -0.13 -2.13 5.22 -27.44 -0.14 -2.28 16 20 C 0.15 2.93 2.51 -68.86 -0.17 2.75 16 21 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 23 H 0.09 2.38 6.09 -51.93 -0.32 2.06 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.82 7.13 -51.93 -0.37 1.45 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.68 6.68 -51.93 -0.35 1.33 16 29 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.70 6.20 -51.93 -0.32 1.38 16 LS Contribution 261.77 15.07 3.94 3.94 Total: -1.00 -28.51 261.77 -7.43 -35.95 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.08 Total: -0.03 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.54 Total: -6.95 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.18 Total: -35.41 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.51 -7.43 -35.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260788593.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.108 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds