Wall clock time and date at job start Mon Mar 30 2020 02:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09005 * 109.48659 * 60.23912 * 9 7 2 11 11 C 1.53042 * 109.49419 * 300.17007 * 9 7 2 12 12 C 1.53061 * 109.34622 * 300.64984 * 11 9 7 13 13 C 1.53083 * 109.29227 * 298.43448 * 12 11 9 14 14 N 1.47736 * 108.70148 * 55.41786 * 13 12 11 15 15 C 1.34073 * 117.85032 * 126.43757 * 14 13 12 16 16 O 1.21279 * 118.75316 * 358.23993 * 15 14 13 17 17 C 1.50314 * 122.50370 * 178.26088 * 15 14 13 18 18 C 1.53308 * 108.51269 * 334.36752 * 17 15 14 19 19 C 1.52790 * 108.19098 * 56.05218 * 18 17 15 20 20 C 1.45686 * 118.11479 * 306.10250 * 14 13 12 21 21 H 1.09002 * 108.09391 * 295.90091 * 20 14 13 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.48907 * 60.61035 * 11 9 7 24 24 H 1.09000 * 109.49029 * 180.68690 * 11 9 7 25 25 H 1.08998 * 109.50089 * 178.48871 * 12 11 9 26 26 H 1.08999 * 109.50015 * 58.38019 * 12 11 9 27 27 H 1.08999 * 109.59700 * 295.65800 * 13 12 11 28 28 H 1.08991 * 109.72705 * 175.26087 * 13 12 11 29 29 H 1.08997 * 109.63294 * 94.07147 * 17 15 14 30 30 H 1.09006 * 109.63301 * 214.46292 * 17 15 14 31 31 H 1.08995 * 109.72287 * 175.72951 * 18 17 15 32 32 H 1.09004 * 109.71918 * 296.33750 * 18 17 15 33 33 H 1.09000 * 109.16842 * 176.31316 * 19 18 17 34 34 H 1.09004 * 109.13974 * 57.15097 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6237 -2.5608 -0.8839 11 6 0.3733 -2.5763 1.2566 12 6 1.2563 -2.4744 2.5026 13 6 2.2343 -3.6519 2.5271 14 7 2.9947 -3.6625 1.2605 15 6 4.3333 -3.6772 1.3337 16 8 4.8582 -3.6486 2.4266 17 6 5.2085 -3.7275 0.1126 18 6 4.4184 -4.3831 -1.0259 19 6 3.1254 -3.5939 -1.2254 20 6 2.2464 -3.6638 0.0105 21 1 1.6785 -4.5926 -0.0431 22 1 -0.4850 0.8400 0.0004 23 1 -0.3426 -1.7543 1.2499 24 1 -0.1624 -3.5256 1.2670 25 1 0.6310 -2.5022 3.3950 26 1 1.8143 -1.5384 2.4777 27 1 1.6804 -4.5851 2.6288 28 1 2.9220 -3.5416 3.3655 29 1 5.4941 -2.7157 -0.1752 30 1 6.1025 -4.3134 0.3266 31 1 5.0077 -4.3614 -1.9426 32 1 4.1836 -5.4148 -0.7641 33 1 2.5816 -4.0068 -2.0749 34 1 3.3708 -2.5520 -1.4313 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260788593.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:01 Heat of formation + Delta-G solvation = -69.402359 kcal Electronic energy + Delta-G solvation = -16526.532650 eV Core-core repulsion = 14036.576889 eV Total energy + Delta-G solvation = -2489.955762 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.57648 -38.57049 -36.21926 -34.86886 -32.61518 -31.74501 -29.00736 -26.98118 -24.86446 -24.06109 -22.68469 -20.88585 -19.54051 -17.88675 -17.52891 -16.91449 -16.72943 -16.04908 -15.38159 -14.97080 -14.88314 -14.54525 -14.11197 -14.07712 -13.60953 -13.40567 -12.87436 -12.82296 -12.54272 -12.47725 -12.11186 -11.83981 -11.68577 -11.47517 -11.38039 -11.21862 -10.73817 -10.37572 -10.34278 -9.34184 -8.04391 -6.11693 1.36172 1.40783 1.47245 1.74493 2.27533 2.43910 3.24633 3.73932 3.98437 4.04037 4.08489 4.28146 4.39820 4.52727 4.55754 4.66167 4.75574 4.81907 4.94669 4.99558 5.05603 5.09635 5.19410 5.25819 5.40198 5.56038 5.60321 5.66025 5.78580 5.87537 6.14649 6.41725 6.76413 6.93927 7.30152 7.52685 8.99513 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.012230 C = 0.011177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.651144 B = 2288.954691 C = 2504.518667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.491 4.491 8 H 0.044 0.956 9 C 0.032 3.968 10 H 0.019 0.981 11 C -0.108 4.108 12 C -0.110 4.110 13 C 0.110 3.890 14 N -0.578 5.578 15 C 0.502 3.498 16 O -0.617 6.617 17 C -0.130 4.130 18 C -0.106 4.106 19 C -0.127 4.127 20 C 0.154 3.846 21 H 0.061 0.939 22 H 0.257 0.743 23 H 0.063 0.937 24 H 0.038 0.962 25 H 0.066 0.934 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.512 -8.409 -2.454 9.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.013 3.987 10 H 0.037 0.963 11 C -0.146 4.146 12 C -0.149 4.149 13 C -0.012 4.012 14 N -0.307 5.307 15 C 0.293 3.707 16 O -0.501 6.501 17 C -0.169 4.169 18 C -0.143 4.143 19 C -0.165 4.165 20 C 0.051 3.949 21 H 0.079 0.921 22 H 0.066 0.934 23 H 0.081 0.919 24 H 0.056 0.944 25 H 0.084 0.916 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.601 -8.270 -1.952 9.663 hybrid contribution 0.031 1.500 0.230 1.518 sum 4.633 -6.770 -1.722 8.382 Atomic orbital electron populations 1.69957 1.06604 1.26539 1.52271 1.25442 0.95357 1.01188 0.95832 0.85984 0.78642 0.81438 0.78121 1.19920 1.21583 1.20713 1.21141 0.92183 0.91232 1.48361 0.93739 1.19101 0.92865 0.92452 0.94251 0.96296 1.21439 0.98413 0.99459 0.95328 1.21604 0.97359 0.97500 0.98400 1.21731 0.94091 0.98729 0.86673 1.47693 1.05281 1.69826 1.07923 1.21066 0.83118 0.74842 0.91698 1.90585 1.73662 1.54595 1.31293 1.21761 0.98398 1.04156 0.92591 1.21517 0.95467 0.99004 0.98354 1.21579 0.96393 1.02143 0.96381 1.20774 0.92926 0.98334 0.82890 0.92058 0.93377 0.91862 0.94364 0.91562 0.94319 0.90302 0.90807 0.88744 0.87152 0.88000 0.90704 0.89014 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.37 11.33 21.45 0.24 -50.12 16 2 C 0.02 1.06 5.30 84.65 0.45 1.51 16 3 Si 0.93 43.30 29.54 68.60 2.03 45.33 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 6 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 7 C -0.49 -24.84 5.96 25.60 0.15 -24.69 16 8 H 0.04 2.31 6.91 -2.91 -0.02 2.29 16 9 C 0.03 1.45 2.14 -11.46 -0.02 1.43 16 10 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 11 C -0.11 -4.78 5.22 30.63 0.16 -4.62 16 12 C -0.11 -4.59 5.84 30.64 0.18 -4.41 16 13 C 0.11 4.17 6.32 86.17 0.54 4.71 16 14 N -0.58 -22.23 2.70 -799.79 -2.16 -24.39 16 15 C 0.50 19.54 7.47 87.65 0.65 20.19 16 16 O -0.62 -28.09 16.06 -3.03 -0.05 -28.14 16 17 C -0.13 -3.77 6.07 29.83 0.18 -3.59 16 18 C -0.11 -2.53 6.04 30.63 0.19 -2.35 16 19 C -0.13 -3.89 5.22 30.14 0.16 -3.73 16 20 C 0.15 5.60 2.51 44.82 0.11 5.71 16 21 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 23 H 0.06 3.22 6.09 -2.39 -0.01 3.20 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.04 1.87 7.13 -2.39 -0.02 1.86 16 27 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.07 2.94 6.68 -2.39 -0.02 2.93 16 29 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.11 2.74 8.14 -2.38 -0.02 2.73 16 31 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.07 2.37 6.20 -2.39 -0.01 2.36 16 Total: -1.00 -61.72 261.77 3.89 -57.83 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 1.07 Total: 9.31 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 2.75 Total: -9.82 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -1.91 Total: -74.51 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.05 Total: -28.14 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -61.72 3.89 -57.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260788593.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.567 kcal (2) G-P(sol) polarization free energy of solvation -61.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds