Wall clock time and date at job start Mon Mar 30 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99646 * 2 1 4 4 H 1.48505 * 109.47174 * 239.99599 * 3 2 1 5 5 H 1.48503 * 109.47511 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46917 * 119.99904 * 3 2 1 7 7 C 1.37875 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99755 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99776 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.48869 * 299.96232 * 9 7 2 11 11 C 1.53030 * 109.48616 * 60.00312 * 9 7 2 12 12 C 1.53065 * 109.33685 * 59.33692 * 11 9 7 13 13 C 1.53076 * 109.26982 * 61.60673 * 12 11 9 14 14 N 1.47736 * 108.72734 * 304.57269 * 13 12 11 15 15 C 1.34078 * 117.82941 * 233.56304 * 14 13 12 16 16 O 1.21286 * 118.75540 * 1.44088 * 15 14 13 17 17 C 1.50308 * 122.50089 * 181.37455 * 15 14 13 18 18 C 1.53314 * 108.46192 * 25.92428 * 17 15 14 19 19 C 1.52787 * 108.19580 * 303.82311 * 18 17 15 20 20 C 1.45689 * 118.13641 * 53.82694 * 14 13 12 21 21 H 1.08994 * 108.08748 * 64.23996 * 20 14 13 22 22 H 0.96996 * 120.00425 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.49682 * 299.37762 * 11 9 7 24 24 H 1.09000 * 109.51916 * 179.31219 * 11 9 7 25 25 H 1.09002 * 109.50175 * 301.67106 * 12 11 9 26 26 H 1.08997 * 109.53832 * 181.56231 * 12 11 9 27 27 H 1.09002 * 109.59311 * 184.80517 * 13 12 11 28 28 H 1.08996 * 109.59683 * 64.34283 * 13 12 11 29 29 H 1.09005 * 109.70440 * 266.20326 * 17 15 14 30 30 H 1.08997 * 109.76461 * 145.68258 * 17 15 14 31 31 H 1.08998 * 109.71785 * 184.14480 * 18 17 15 32 32 H 1.08999 * 109.74964 * 63.51307 * 18 17 15 33 33 H 1.09007 * 109.14585 * 302.78857 * 19 18 17 34 34 H 1.09004 * 109.15073 * 183.63647 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6245 -2.5573 0.8905 11 6 0.3717 -2.5809 -1.2492 12 6 1.2534 -2.4833 -2.4966 13 6 2.2305 -3.6615 -2.5180 14 7 2.9925 -3.6688 -1.2524 15 6 4.3311 -3.6850 -1.3278 16 8 4.8541 -3.6661 -2.4219 17 6 5.2083 -3.7241 -0.1078 18 6 4.4212 -4.3753 1.0354 19 6 3.1272 -3.5874 1.2331 20 6 2.2463 -3.6639 -0.0011 21 1 1.6787 -4.5925 0.0581 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3443 -1.7589 -1.2447 24 1 -0.1643 -3.5299 -1.2559 25 1 1.8120 -1.5476 -2.4751 26 1 0.6276 -2.5133 -3.3885 27 1 2.9171 -3.5517 -3.3574 28 1 1.6758 -4.5947 -2.6160 29 1 5.4916 -2.7099 0.1738 30 1 6.1035 -4.3099 -0.3163 31 1 5.0121 -4.3478 1.9510 32 1 4.1871 -5.4086 0.7796 33 1 3.3710 -2.5441 1.4344 34 1 2.5853 -3.9977 2.0853 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260788607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:03 Heat of formation + Delta-G solvation = -53.004494 kcal Electronic energy + Delta-G solvation = -16524.941331 eV Core-core repulsion = 14035.696634 eV Total energy + Delta-G solvation = -2489.244697 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.02683 -36.88939 -34.79740 -33.03063 -30.83381 -30.22607 -27.48470 -25.06198 -23.34595 -22.57190 -21.09116 -19.17413 -18.03431 -16.11915 -15.95552 -15.20791 -15.05359 -14.36048 -13.84532 -13.44065 -13.28184 -12.99090 -12.58725 -12.40970 -12.03512 -11.65887 -11.32760 -11.03988 -10.91541 -10.69574 -10.56722 -10.46605 -10.01948 -9.77510 -9.62005 -9.54700 -8.96931 -8.71622 -8.38376 -7.71094 -6.03003 -4.07398 3.28838 3.29911 3.34148 3.38181 3.77099 4.40457 5.09769 5.23813 5.25299 5.29305 5.42047 5.82001 5.91613 5.98575 6.05345 6.06985 6.11703 6.23151 6.28867 6.41480 6.48972 6.54835 6.70755 6.79840 6.99421 7.09781 7.34604 7.48842 7.59160 7.77062 8.03083 8.30364 8.37600 8.85629 8.92113 9.55764 11.02461 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.012231 C = 0.011167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.651198 B = 2288.648224 C = 2506.747307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.498 4.498 8 H 0.054 0.946 9 C 0.037 3.963 10 H 0.038 0.962 11 C -0.111 4.111 12 C -0.119 4.119 13 C 0.110 3.890 14 N -0.572 5.572 15 C 0.514 3.486 16 O -0.581 6.581 17 C -0.132 4.132 18 C -0.119 4.119 19 C -0.129 4.129 20 C 0.152 3.848 21 H 0.042 0.958 22 H 0.260 0.740 23 H 0.095 0.905 24 H 0.016 0.984 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 -6.893 1.653 7.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.712 3.288 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.018 3.982 10 H 0.056 0.944 11 C -0.149 4.149 12 C -0.157 4.157 13 C -0.013 4.013 14 N -0.303 5.303 15 C 0.303 3.697 16 O -0.463 6.463 17 C -0.172 4.172 18 C -0.157 4.157 19 C -0.166 4.166 20 C 0.049 3.951 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.113 0.887 24 H 0.035 0.965 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.712 -6.757 1.135 7.792 hybrid contribution 0.345 1.037 0.051 1.095 sum 4.058 -5.719 1.186 7.112 Atomic orbital electron populations 1.69840 1.05779 1.26479 1.50766 1.24888 0.94759 0.98794 0.95284 0.86776 0.79722 0.83607 0.78659 1.20363 1.21370 1.20326 1.20921 0.92550 0.90036 1.50111 0.92817 1.19119 0.92300 0.91850 0.94956 0.94362 1.21549 0.98793 0.99662 0.94908 1.21731 0.97377 0.98573 0.98016 1.21740 0.94471 0.98326 0.86732 1.47534 1.04928 1.70189 1.07642 1.20225 0.82902 0.75830 0.90742 1.90609 1.73213 1.53011 1.29432 1.21686 0.98199 1.03491 0.93843 1.21555 0.97072 0.99268 0.97789 1.21600 0.95014 1.02879 0.97119 1.20784 0.92922 0.99353 0.82041 0.94017 0.92988 0.88711 0.96519 0.90559 0.93583 0.89875 0.93012 0.88608 0.89322 0.91293 0.92123 0.89065 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.11 11.33 55.43 0.63 -23.48 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.88 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.50 -12.52 5.96 -34.44 -0.21 -12.73 16 8 H 0.05 1.38 6.90 -52.49 -0.36 1.02 16 9 C 0.04 0.83 2.14 -91.65 -0.20 0.64 16 10 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.47 5.22 -26.68 -0.14 -2.61 16 12 C -0.12 -2.49 5.84 -26.66 -0.16 -2.65 16 13 C 0.11 2.15 6.32 -3.33 -0.02 2.13 16 14 N -0.57 -11.47 2.70 -166.60 -0.45 -11.92 16 15 C 0.51 10.39 7.47 -11.49 -0.09 10.30 16 16 O -0.58 -13.41 16.06 5.55 0.09 -13.32 16 17 C -0.13 -2.11 6.08 -27.91 -0.17 -2.28 16 18 C -0.12 -1.67 6.04 -26.68 -0.16 -1.83 16 19 C -0.13 -2.14 5.22 -27.44 -0.14 -2.28 16 20 C 0.15 2.93 2.51 -68.86 -0.17 2.75 16 21 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 23 H 0.09 2.38 6.09 -51.93 -0.32 2.06 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 1.83 7.13 -51.93 -0.37 1.46 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 1.68 6.68 -51.93 -0.35 1.34 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.71 6.18 -51.92 -0.32 1.39 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 261.75 15.07 3.94 3.94 Total: -1.00 -28.45 261.75 -7.43 -35.88 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.08 Total: 0.04 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.54 Total: -6.98 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.18 Total: -35.40 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.45 -7.43 -35.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260788607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.123 kcal (2) G-P(sol) polarization free energy of solvation -28.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds