Wall clock time and date at job start Mon Mar 30 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99646 * 2 1 4 4 H 1.48505 * 109.47174 * 239.99599 * 3 2 1 5 5 H 1.48503 * 109.47511 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46917 * 119.99904 * 3 2 1 7 7 C 1.37875 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99755 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99776 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.48869 * 299.96232 * 9 7 2 11 11 C 1.53030 * 109.48616 * 60.00312 * 9 7 2 12 12 C 1.53065 * 109.33685 * 59.33692 * 11 9 7 13 13 C 1.53076 * 109.26982 * 61.60673 * 12 11 9 14 14 N 1.47736 * 108.72734 * 304.57269 * 13 12 11 15 15 C 1.34078 * 117.82941 * 233.56304 * 14 13 12 16 16 O 1.21286 * 118.75540 * 1.44088 * 15 14 13 17 17 C 1.50308 * 122.50089 * 181.37455 * 15 14 13 18 18 C 1.53314 * 108.46192 * 25.92428 * 17 15 14 19 19 C 1.52787 * 108.19580 * 303.82311 * 18 17 15 20 20 C 1.45689 * 118.13641 * 53.82694 * 14 13 12 21 21 H 1.08994 * 108.08748 * 64.23996 * 20 14 13 22 22 H 0.96996 * 120.00425 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.49682 * 299.37762 * 11 9 7 24 24 H 1.09000 * 109.51916 * 179.31219 * 11 9 7 25 25 H 1.09002 * 109.50175 * 301.67106 * 12 11 9 26 26 H 1.08997 * 109.53832 * 181.56231 * 12 11 9 27 27 H 1.09002 * 109.59311 * 184.80517 * 13 12 11 28 28 H 1.08996 * 109.59683 * 64.34283 * 13 12 11 29 29 H 1.09005 * 109.70440 * 266.20326 * 17 15 14 30 30 H 1.08997 * 109.76461 * 145.68258 * 17 15 14 31 31 H 1.08998 * 109.71785 * 184.14480 * 18 17 15 32 32 H 1.08999 * 109.74964 * 63.51307 * 18 17 15 33 33 H 1.09007 * 109.14585 * 302.78857 * 19 18 17 34 34 H 1.09004 * 109.15073 * 183.63647 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6245 -2.5573 0.8905 11 6 0.3717 -2.5809 -1.2492 12 6 1.2534 -2.4833 -2.4966 13 6 2.2305 -3.6615 -2.5180 14 7 2.9925 -3.6688 -1.2524 15 6 4.3311 -3.6850 -1.3278 16 8 4.8541 -3.6661 -2.4219 17 6 5.2083 -3.7241 -0.1078 18 6 4.4212 -4.3753 1.0354 19 6 3.1272 -3.5874 1.2331 20 6 2.2463 -3.6639 -0.0011 21 1 1.6787 -4.5925 0.0581 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3443 -1.7589 -1.2447 24 1 -0.1643 -3.5299 -1.2559 25 1 1.8120 -1.5476 -2.4751 26 1 0.6276 -2.5133 -3.3885 27 1 2.9171 -3.5517 -3.3574 28 1 1.6758 -4.5947 -2.6160 29 1 5.4916 -2.7099 0.1738 30 1 6.1035 -4.3099 -0.3163 31 1 5.0121 -4.3478 1.9510 32 1 4.1871 -5.4086 0.7796 33 1 3.3710 -2.5441 1.4344 34 1 2.5853 -3.9977 2.0853 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260788607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:03 Heat of formation + Delta-G solvation = -69.294623 kcal Electronic energy + Delta-G solvation = -16525.647724 eV Core-core repulsion = 14035.696634 eV Total energy + Delta-G solvation = -2489.951090 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.57558 -38.56901 -36.21920 -34.86772 -32.61512 -31.74603 -29.00573 -26.97939 -24.86286 -24.06007 -22.68392 -20.88354 -19.54185 -17.88434 -17.52736 -16.91137 -16.72826 -16.04986 -15.38575 -14.96962 -14.88308 -14.54190 -14.11258 -14.07637 -13.60853 -13.39934 -12.89193 -12.80550 -12.53876 -12.47888 -12.11109 -11.83800 -11.68122 -11.47581 -11.38418 -11.21702 -10.73751 -10.37744 -10.34204 -9.34259 -8.04036 -6.11498 1.37839 1.41157 1.45743 1.74437 2.27484 2.44162 3.24863 3.73974 3.98471 4.04043 4.08556 4.28286 4.39650 4.52783 4.55753 4.66085 4.75486 4.81937 4.94798 4.99504 5.05529 5.09557 5.19410 5.25792 5.40200 5.56003 5.60361 5.66008 5.78506 5.87516 6.14665 6.41740 6.76383 6.93894 7.30152 7.52762 8.99648 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.012231 C = 0.011167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.651198 B = 2288.648224 C = 2506.747307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 0.930 3.070 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.492 4.492 8 H 0.045 0.955 9 C 0.033 3.967 10 H 0.019 0.981 11 C -0.108 4.108 12 C -0.111 4.111 13 C 0.110 3.890 14 N -0.578 5.578 15 C 0.503 3.497 16 O -0.617 6.617 17 C -0.130 4.130 18 C -0.106 4.106 19 C -0.127 4.127 20 C 0.154 3.846 21 H 0.061 0.939 22 H 0.257 0.743 23 H 0.063 0.937 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.546 -8.364 2.500 9.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.014 3.986 10 H 0.037 0.963 11 C -0.146 4.146 12 C -0.149 4.149 13 C -0.012 4.012 14 N -0.307 5.307 15 C 0.293 3.707 16 O -0.501 6.501 17 C -0.169 4.169 18 C -0.144 4.144 19 C -0.165 4.165 20 C 0.051 3.949 21 H 0.079 0.921 22 H 0.066 0.934 23 H 0.081 0.919 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.631 -8.229 2.005 9.653 hybrid contribution 0.030 1.495 -0.242 1.514 sum 4.662 -6.734 1.763 8.378 Atomic orbital electron populations 1.69952 1.06613 1.26614 1.52184 1.25445 0.95362 1.01191 0.95814 0.86051 0.78698 0.81142 0.78357 1.21286 1.21360 1.19440 1.21114 0.92190 0.91226 1.48494 0.93706 1.19094 0.92854 0.92441 0.94246 0.96310 1.21439 0.98412 0.99448 0.95334 1.21606 0.97379 0.97489 0.98396 1.21732 0.94070 0.98712 0.86699 1.47695 1.05290 1.69824 1.07915 1.21061 0.83119 0.74834 0.91688 1.90587 1.73756 1.54595 1.31181 1.21757 0.98391 1.04196 0.92566 1.21522 0.95486 0.99038 0.98325 1.21582 0.96377 1.02153 0.96390 1.20770 0.92957 0.98331 0.82852 0.92071 0.93373 0.91872 0.94375 0.94344 0.91574 0.90811 0.90287 0.88685 0.87149 0.88015 0.90717 0.91544 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.39 11.33 21.45 0.24 -50.15 16 2 C 0.02 1.07 5.30 84.65 0.45 1.52 16 3 Si 0.93 43.23 29.54 68.60 2.03 45.26 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.49 -24.87 5.96 25.60 0.15 -24.72 16 8 H 0.04 2.31 6.90 -2.91 -0.02 2.29 16 9 C 0.03 1.47 2.14 -11.46 -0.02 1.44 16 10 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 11 C -0.11 -4.78 5.22 30.63 0.16 -4.62 16 12 C -0.11 -4.60 5.84 30.64 0.18 -4.42 16 13 C 0.11 4.18 6.32 86.17 0.54 4.72 16 14 N -0.58 -22.22 2.70 -799.78 -2.16 -24.38 16 15 C 0.50 19.51 7.47 87.64 0.65 20.16 16 16 O -0.62 -28.02 16.06 -3.05 -0.05 -28.07 16 17 C -0.13 -3.77 6.08 29.83 0.18 -3.58 16 18 C -0.11 -2.54 6.04 30.63 0.18 -2.36 16 19 C -0.13 -3.89 5.22 30.14 0.16 -3.74 16 20 C 0.15 5.61 2.51 44.83 0.11 5.72 16 21 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 23 H 0.06 3.21 6.09 -2.38 -0.01 3.20 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.87 7.13 -2.39 -0.02 1.85 16 26 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.07 2.94 6.68 -2.39 -0.02 2.93 16 28 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 30 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.38 6.18 -2.38 -0.01 2.36 16 34 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 Total: -1.00 -61.60 261.75 3.88 -57.71 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.07 Total: 9.50 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 2.75 Total: -9.87 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -1.92 Total: -74.52 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.05 Total: -28.07 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -61.60 3.88 -57.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260788607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.580 kcal (2) G-P(sol) polarization free energy of solvation -61.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds