Wall clock time and date at job start Mon Mar 30 2020 03:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47043 * 2 1 4 4 O 1.34602 * 126.31771 * 277.06020 * 3 2 1 5 5 C 1.34945 * 107.60365 * 179.97438 * 4 3 2 6 6 C 1.39798 * 125.79745 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00487 * 185.28879 * 6 5 4 8 8 C 1.40342 * 120.00058 * 5.29096 * 6 5 4 9 9 N 1.30628 * 120.00048 * 5.36932 * 8 6 5 10 10 Si 1.86799 * 120.00082 * 185.37534 * 8 6 5 11 11 H 1.48496 * 109.47494 * 94.99596 * 10 8 6 12 12 H 1.48502 * 109.47285 * 214.99456 * 10 8 6 13 13 H 1.48499 * 109.47231 * 334.99211 * 10 8 6 14 14 N 1.32808 * 108.40526 * 359.75622 * 5 4 3 15 15 C 1.33062 * 108.65068 * 0.39952 * 14 5 4 16 16 C 1.50704 * 126.01249 * 179.86826 * 15 14 5 17 17 C 1.53002 * 109.46892 * 245.89718 * 16 15 14 18 18 C 1.53003 * 109.47128 * 125.89819 * 16 15 14 19 19 C 1.53001 * 109.46801 * 5.89936 * 16 15 14 20 20 H 1.08996 * 109.47072 * 186.44834 * 1 2 3 21 21 H 1.09002 * 109.47189 * 306.45363 * 1 2 3 22 22 H 1.09000 * 109.47156 * 66.45130 * 1 2 3 23 23 H 1.09004 * 109.46844 * 240.00338 * 2 1 3 24 24 H 1.08992 * 109.47064 * 120.00055 * 2 1 3 25 25 H 0.96996 * 120.00155 * 180.02562 * 9 8 6 26 26 H 1.09002 * 109.47076 * 294.64742 * 17 16 15 27 27 H 1.08999 * 109.46647 * 174.64768 * 17 16 15 28 28 H 1.08997 * 109.46867 * 54.65162 * 17 16 15 29 29 H 1.09000 * 109.47120 * 187.38204 * 18 16 15 30 30 H 1.09001 * 109.46967 * 307.38161 * 18 16 15 31 31 H 1.09004 * 109.47209 * 67.37753 * 18 16 15 32 32 H 1.08998 * 109.46856 * 299.99216 * 19 16 15 33 33 H 1.08992 * 109.47189 * 60.00569 * 19 16 15 34 34 H 1.09008 * 109.46298 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.1724 2.2169 -1.0763 5 6 2.6480 3.4044 -0.6466 6 6 2.9327 4.5110 -1.4519 7 1 3.3913 5.3888 -1.0211 8 6 2.6226 4.4815 -2.8203 9 7 1.9738 3.4643 -3.3211 10 14 3.1376 5.8966 -3.9256 11 1 4.4332 5.5718 -4.5744 12 1 2.1024 6.1125 -4.9682 13 1 3.2865 7.1305 -3.1129 14 7 2.7942 3.3451 0.6721 15 6 2.4271 2.1353 1.0870 16 6 2.4404 1.6454 2.5121 17 6 3.4748 0.5275 2.6575 18 6 1.0553 1.1096 2.8802 19 6 2.8045 2.8018 3.4454 20 1 -0.3633 -1.0211 0.1154 21 1 -0.3634 0.6106 0.8266 22 1 -0.3633 0.4106 -0.9421 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 1.7598 3.4437 -4.2670 26 1 3.1650 -0.3335 2.0652 27 1 3.5526 0.2385 3.7056 28 1 4.4438 0.8812 2.3053 29 1 1.0267 0.8774 3.9448 30 1 0.3018 1.8636 2.6524 31 1 0.8507 0.2062 2.3055 32 1 3.7912 3.1834 3.1833 33 1 2.0675 3.5981 3.3419 34 1 2.8145 2.4473 4.4762 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260796571.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:13 Heat of formation + Delta-G solvation = -19.598513 kcal Electronic energy + Delta-G solvation = -15895.214517 eV Core-core repulsion = 13407.418412 eV Total energy + Delta-G solvation = -2487.796105 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.05251 -36.59638 -33.74424 -32.96147 -31.79862 -28.47574 -26.85807 -26.65771 -25.36044 -22.70868 -20.85605 -19.79909 -18.51667 -16.93347 -15.25477 -14.90251 -14.60456 -14.16747 -13.83696 -13.42041 -13.18262 -12.89933 -12.35884 -11.90916 -11.72478 -11.71226 -11.39710 -11.34192 -11.17230 -11.05861 -10.60430 -10.52974 -10.45950 -10.33768 -10.14055 -9.85869 -9.52333 -9.09789 -8.40219 -7.18669 -6.87185 -4.57941 2.89415 3.04284 3.10191 3.37118 3.86815 4.18165 4.79205 5.29676 5.31563 5.43630 5.64921 5.65664 5.90187 5.97411 6.01098 6.04816 6.09809 6.22415 6.31397 6.35067 6.43698 6.49779 6.54925 6.59005 6.78131 6.84777 6.91586 6.94035 7.05563 7.21282 7.84973 8.03914 8.27817 8.58674 8.77104 9.94008 10.16207 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035975 B = 0.008816 C = 0.007570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.138064 B = 3175.266318 C = 3697.870496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.015 4.015 3 C -0.183 4.183 4 O -0.183 6.183 5 C 0.346 3.654 6 C -0.433 4.433 7 H 0.108 0.892 8 C 0.071 3.929 9 N -0.778 5.778 10 Si 0.928 3.072 11 H -0.267 1.267 12 H -0.275 1.275 13 H -0.258 1.258 14 N -0.605 5.605 15 C 0.032 3.968 16 C 0.016 3.984 17 C -0.136 4.136 18 C -0.141 4.141 19 C -0.120 4.120 20 H 0.046 0.954 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.284 0.716 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.002 -4.772 5.114 7.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.053 4.053 3 C -0.239 4.239 4 O -0.075 6.075 5 C 0.161 3.839 6 C -0.468 4.468 7 H 0.126 0.874 8 C -0.151 4.151 9 N -0.406 5.406 10 Si 0.752 3.248 11 H -0.192 1.192 12 H -0.200 1.200 13 H -0.182 1.182 14 N -0.338 5.338 15 C -0.094 4.094 16 C 0.015 3.985 17 C -0.193 4.193 18 C -0.198 4.198 19 C -0.177 4.177 20 H 0.065 0.935 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.879 -4.345 5.265 6.883 hybrid contribution -0.108 0.029 -1.120 1.126 sum -0.987 -4.316 4.144 6.064 Atomic orbital electron populations 1.21898 0.96155 1.00203 1.02433 1.19626 0.94764 0.89583 1.01324 1.22399 1.19092 0.95913 0.86479 1.84761 1.67008 1.22447 1.33318 1.21997 0.89881 0.84427 0.87570 1.18347 1.38399 0.98574 0.91522 0.87404 1.26079 0.92758 0.97428 0.98828 1.69720 1.27142 1.28594 1.15096 0.85960 0.78999 0.80759 0.79089 1.19239 1.20015 1.18168 1.70785 1.33498 1.20129 1.09402 1.20854 1.02710 0.91881 0.93916 1.18713 0.94813 0.94724 0.90242 1.21895 0.99085 0.97972 1.00367 1.22065 0.96479 1.01244 1.00055 1.21593 1.02389 0.97572 0.96172 0.93477 0.92440 0.92719 0.92382 0.90691 0.90498 0.92633 0.93104 0.92781 0.93259 0.92850 0.91903 0.92388 0.92708 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.24 37.16 0.34 -2.23 16 2 C -0.02 -0.30 5.52 -27.88 -0.15 -0.45 16 3 C -0.18 -4.51 6.49 -35.13 -0.23 -4.74 16 4 O -0.18 -5.31 9.12 3.10 0.03 -5.28 16 5 C 0.35 10.15 7.64 -16.55 -0.13 10.03 16 6 C -0.43 -12.11 9.45 -38.21 -0.36 -12.47 16 7 H 0.11 2.89 7.86 -52.49 -0.41 2.48 16 8 C 0.07 1.83 5.50 -17.27 -0.09 1.74 16 9 N -0.78 -20.93 12.02 55.57 0.67 -20.26 16 10 Si 0.93 18.87 29.57 -169.99 -5.03 13.84 16 11 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 12 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 13 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 14 N -0.61 -16.81 10.67 -9.65 -0.10 -16.92 16 15 C 0.03 0.76 5.50 -82.88 -0.46 0.31 16 16 C 0.02 0.30 0.75 -155.66 -0.12 0.18 16 17 C -0.14 -2.23 8.31 37.16 0.31 -1.92 16 18 C -0.14 -2.30 7.25 37.16 0.27 -2.03 16 19 C -0.12 -2.18 7.97 37.16 0.30 -1.88 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.06 0.99 6.37 -51.93 -0.33 0.66 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.07 1.26 4.28 -51.93 -0.22 1.03 16 25 H 0.28 6.85 8.29 -40.82 -0.34 6.51 16 26 H 0.05 0.86 5.79 -51.93 -0.30 0.56 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.93 8.05 -51.93 -0.42 0.52 16 31 H 0.06 0.97 4.41 -51.93 -0.23 0.74 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 LS Contribution 274.62 15.07 4.14 4.14 Total: -1.00 -30.60 274.62 -5.46 -36.06 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -4.85 Total: 1.88 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.32 Total: -13.46 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.57 Total: -37.18 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: 0.03 Total: -5.28 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.60 -5.46 -36.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260796571.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.462 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds