Wall clock time and date at job start Mon Mar 30 2020 03:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47043 * 2 1 4 4 O 1.34602 * 126.31771 * 277.06020 * 3 2 1 5 5 C 1.34945 * 107.60365 * 179.97438 * 4 3 2 6 6 C 1.39798 * 125.79745 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00487 * 185.28879 * 6 5 4 8 8 C 1.40342 * 120.00058 * 5.29096 * 6 5 4 9 9 N 1.30628 * 120.00048 * 5.36932 * 8 6 5 10 10 Si 1.86799 * 120.00082 * 185.37534 * 8 6 5 11 11 H 1.48496 * 109.47494 * 94.99596 * 10 8 6 12 12 H 1.48502 * 109.47285 * 214.99456 * 10 8 6 13 13 H 1.48499 * 109.47231 * 334.99211 * 10 8 6 14 14 N 1.32808 * 108.40526 * 359.75622 * 5 4 3 15 15 C 1.33062 * 108.65068 * 0.39952 * 14 5 4 16 16 C 1.50704 * 126.01249 * 179.86826 * 15 14 5 17 17 C 1.53002 * 109.46892 * 245.89718 * 16 15 14 18 18 C 1.53003 * 109.47128 * 125.89819 * 16 15 14 19 19 C 1.53001 * 109.46801 * 5.89936 * 16 15 14 20 20 H 1.08996 * 109.47072 * 186.44834 * 1 2 3 21 21 H 1.09002 * 109.47189 * 306.45363 * 1 2 3 22 22 H 1.09000 * 109.47156 * 66.45130 * 1 2 3 23 23 H 1.09004 * 109.46844 * 240.00338 * 2 1 3 24 24 H 1.08992 * 109.47064 * 120.00055 * 2 1 3 25 25 H 0.96996 * 120.00155 * 180.02562 * 9 8 6 26 26 H 1.09002 * 109.47076 * 294.64742 * 17 16 15 27 27 H 1.08999 * 109.46647 * 174.64768 * 17 16 15 28 28 H 1.08997 * 109.46867 * 54.65162 * 17 16 15 29 29 H 1.09000 * 109.47120 * 187.38204 * 18 16 15 30 30 H 1.09001 * 109.46967 * 307.38161 * 18 16 15 31 31 H 1.09004 * 109.47209 * 67.37753 * 18 16 15 32 32 H 1.08998 * 109.46856 * 299.99216 * 19 16 15 33 33 H 1.08992 * 109.47189 * 60.00569 * 19 16 15 34 34 H 1.09008 * 109.46298 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.1724 2.2169 -1.0763 5 6 2.6480 3.4044 -0.6466 6 6 2.9327 4.5110 -1.4519 7 1 3.3913 5.3888 -1.0211 8 6 2.6226 4.4815 -2.8203 9 7 1.9738 3.4643 -3.3211 10 14 3.1376 5.8966 -3.9256 11 1 4.4332 5.5718 -4.5744 12 1 2.1024 6.1125 -4.9682 13 1 3.2865 7.1305 -3.1129 14 7 2.7942 3.3451 0.6721 15 6 2.4271 2.1353 1.0870 16 6 2.4404 1.6454 2.5121 17 6 3.4748 0.5275 2.6575 18 6 1.0553 1.1096 2.8802 19 6 2.8045 2.8018 3.4454 20 1 -0.3633 -1.0211 0.1154 21 1 -0.3634 0.6106 0.8266 22 1 -0.3633 0.4106 -0.9421 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8899 25 1 1.7598 3.4437 -4.2670 26 1 3.1650 -0.3335 2.0652 27 1 3.5526 0.2385 3.7056 28 1 4.4438 0.8812 2.3053 29 1 1.0267 0.8774 3.9448 30 1 0.3018 1.8636 2.6524 31 1 0.8507 0.2062 2.3055 32 1 3.7912 3.1834 3.1833 33 1 2.0675 3.5981 3.3419 34 1 2.8145 2.4473 4.4762 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260796571.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:13 Heat of formation + Delta-G solvation = -40.476148 kcal Electronic energy + Delta-G solvation = -15896.119839 eV Core-core repulsion = 13407.418412 eV Total energy + Delta-G solvation = -2488.701427 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.04798 -38.16132 -35.69914 -34.69787 -33.65905 -30.44077 -28.25694 -28.01202 -27.15969 -24.35634 -22.72986 -21.65445 -20.38377 -18.77359 -17.17875 -16.64011 -16.52073 -15.70785 -15.47080 -14.90915 -14.85928 -14.38491 -14.02605 -13.46048 -13.31848 -13.08808 -13.07677 -12.88840 -12.86396 -12.51355 -12.20060 -12.07916 -11.99993 -11.82204 -11.71490 -11.43212 -11.41137 -11.05148 -10.43226 -9.15910 -8.82426 -6.65160 1.12914 1.36101 1.54151 1.57804 2.15757 2.26825 2.92330 3.24070 3.78707 4.02289 4.17438 4.19896 4.39865 4.48398 4.52629 4.71514 4.83020 4.86595 4.93863 4.94663 5.02159 5.03827 5.04591 5.08007 5.16588 5.21868 5.31481 5.41268 5.55215 5.62364 5.94033 6.10014 6.23696 6.56631 6.70570 7.90808 8.22898 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035975 B = 0.008816 C = 0.007570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.138064 B = 3175.266318 C = 3697.870496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.014 4.014 3 C -0.202 4.202 4 O -0.213 6.213 5 C 0.307 3.693 6 C -0.468 4.468 7 H 0.106 0.894 8 C 0.028 3.972 9 N -0.814 5.814 10 Si 1.012 2.988 11 H -0.257 1.257 12 H -0.260 1.260 13 H -0.253 1.253 14 N -0.631 5.631 15 C 0.019 3.981 16 C 0.009 3.991 17 C -0.130 4.130 18 C -0.134 4.134 19 C -0.115 4.115 20 H 0.090 0.910 21 H 0.055 0.945 22 H 0.028 0.972 23 H 0.056 0.944 24 H 0.106 0.894 25 H 0.295 0.705 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.032 0.968 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 -5.869 5.926 8.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.051 4.051 3 C -0.256 4.256 4 O -0.106 6.106 5 C 0.122 3.878 6 C -0.503 4.503 7 H 0.124 0.876 8 C -0.190 4.190 9 N -0.442 5.442 10 Si 0.830 3.170 11 H -0.181 1.181 12 H -0.184 1.184 13 H -0.176 1.176 14 N -0.365 5.365 15 C -0.105 4.105 16 C 0.008 3.992 17 C -0.187 4.187 18 C -0.192 4.192 19 C -0.172 4.172 20 H 0.109 0.891 21 H 0.074 0.926 22 H 0.047 0.953 23 H 0.075 0.925 24 H 0.124 0.876 25 H 0.106 0.894 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.051 0.949 29 H 0.105 0.895 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.121 -5.480 6.099 8.275 hybrid contribution -0.050 0.308 -1.300 1.336 sum -1.172 -5.172 4.800 7.153 Atomic orbital electron populations 1.21838 0.94449 1.02682 1.00983 1.19868 0.96142 0.86377 1.02726 1.23499 1.18705 0.97706 0.85708 1.84712 1.67456 1.22977 1.35422 1.22549 0.91371 0.85321 0.88544 1.18719 1.39820 0.98648 0.93162 0.87580 1.27171 0.91874 1.00532 0.99470 1.69781 1.27577 1.30680 1.16165 0.84753 0.79087 0.76507 0.76673 1.18130 1.18398 1.17592 1.70772 1.34379 1.22329 1.09042 1.21747 1.01428 0.90639 0.96690 1.19016 0.97499 0.95771 0.86922 1.21858 0.96926 0.96954 1.02977 1.22019 0.93781 1.00767 1.02599 1.21552 1.00256 0.96923 0.98473 0.89126 0.92642 0.95260 0.92532 0.87588 0.89398 0.91723 0.89245 0.94922 0.89546 0.94934 0.90821 0.94659 0.94925 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 9.24 71.98 0.67 -3.99 16 2 C -0.01 -0.52 5.52 29.85 0.16 -0.35 16 3 C -0.20 -10.14 6.49 25.15 0.16 -9.98 16 4 O -0.21 -12.89 9.12 -11.84 -0.11 -13.00 16 5 C 0.31 18.95 7.64 84.92 0.65 19.60 16 6 C -0.47 -27.42 9.45 23.16 0.22 -27.21 16 7 H 0.11 5.98 7.86 -2.91 -0.02 5.95 16 8 C 0.03 1.47 5.50 85.38 0.47 1.94 16 9 N -0.81 -45.02 12.02 21.90 0.26 -44.76 16 10 Si 1.01 38.89 29.57 68.60 2.03 40.92 16 11 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 12 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 13 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 14 N -0.63 -36.65 10.67 -297.41 -3.17 -39.82 16 15 C 0.02 0.95 5.50 41.84 0.23 1.18 16 16 C 0.01 0.32 0.75 -52.92 -0.04 0.28 16 17 C -0.13 -3.90 8.31 71.98 0.60 -3.31 16 18 C -0.13 -3.99 7.25 71.98 0.52 -3.47 16 19 C -0.11 -4.06 7.97 71.98 0.57 -3.48 16 20 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 21 H 0.05 1.82 6.37 -2.39 -0.02 1.81 16 22 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 24 H 0.11 3.24 4.28 -2.39 -0.01 3.23 16 25 H 0.30 14.44 8.29 -92.71 -0.77 13.67 16 26 H 0.06 1.80 5.79 -2.39 -0.01 1.78 16 27 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.03 1.08 8.05 -2.39 -0.02 1.06 16 31 H 0.07 2.00 4.41 -2.38 -0.01 1.99 16 32 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -71.17 274.62 4.31 -66.86 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 1.09 Total: 18.60 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 4.21 Total: -28.79 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -2.91 Total: -84.58 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.11 Total: -13.00 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -71.17 4.31 -66.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260796571.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.384 kcal (2) G-P(sol) polarization free energy of solvation -71.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds