Wall clock time and date at job start Mon Mar 30 2020 03:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99512 * 2 1 4 4 H 1.48500 * 109.47292 * 269.99903 * 3 2 1 5 5 H 1.48501 * 109.47245 * 29.99872 * 3 2 1 6 6 H 1.48504 * 109.46998 * 149.99865 * 3 2 1 7 7 C 1.37870 * 120.00441 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46987 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.37916 * 307.41319 * 10 9 7 12 12 C 1.53133 * 110.43810 * 184.99926 * 10 9 7 13 13 N 1.43839 * 111.42416 * 183.21048 * 12 10 9 14 14 C 1.43784 * 118.35567 * 96.88779 * 13 12 10 15 15 C 1.52906 * 111.05164 * 275.25819 * 14 13 12 16 16 C 1.50966 * 111.75353 * 6.62684 * 15 14 13 17 17 C 1.53124 * 111.56634 * 304.91442 * 16 15 14 18 18 C 1.46324 * 115.47556 * 320.10099 * 13 12 10 19 19 C 1.50784 * 112.17459 * 64.96504 * 16 15 14 20 20 O 1.20764 * 121.92511 * 82.24338 * 19 16 15 21 21 H 0.97000 * 120.00929 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47143 * 60.00043 * 9 7 2 23 23 H 1.09000 * 109.46603 * 300.00153 * 9 7 2 24 24 H 1.08997 * 109.08779 * 62.70629 * 12 10 9 25 25 H 1.09002 * 109.08521 * 303.71197 * 12 10 9 26 26 H 1.08998 * 109.16619 * 154.85009 * 14 13 12 27 27 H 1.09004 * 109.16198 * 35.66429 * 14 13 12 28 28 H 1.08994 * 109.02734 * 246.04310 * 15 14 13 29 29 H 1.08998 * 109.02535 * 127.20971 * 15 14 13 30 30 H 1.09001 * 108.88417 * 184.75221 * 16 15 14 31 31 H 1.08994 * 109.22353 * 163.83201 * 17 16 15 32 32 H 1.09005 * 109.21858 * 283.17285 * 17 16 15 33 33 H 1.09004 * 109.19941 * 194.55892 * 18 13 12 34 34 H 1.09003 * 109.19637 * 313.84499 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4463 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 1 2.9646 -3.5474 -0.8092 12 6 1.5067 -4.9975 -0.1232 13 7 2.4158 -6.1097 -0.0495 14 6 2.5856 -6.7702 1.2163 15 6 3.6262 -6.0513 2.0757 16 6 4.0789 -4.7583 1.4414 17 6 4.6016 -4.9817 0.0195 18 6 3.6882 -5.9300 -0.7493 19 6 2.9627 -3.7490 1.3475 20 8 2.6533 -3.0502 2.2825 21 1 -0.4851 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5566 0.8903 24 1 0.9836 -5.0273 -1.0790 25 1 0.7780 -5.0786 0.6834 26 1 2.9110 -7.7961 1.0439 27 1 1.6321 -6.7823 1.7444 28 1 4.4895 -6.7034 2.2081 29 1 3.1927 -5.8353 3.0521 30 1 4.8773 -4.3290 2.0467 31 1 4.6456 -4.0251 -0.5011 32 1 5.6032 -5.4091 0.0684 33 1 4.1805 -6.8971 -0.8521 34 1 3.4972 -5.5187 -1.7405 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260838052.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:36 Heat of formation + Delta-G solvation = -38.084936 kcal Electronic energy + Delta-G solvation = -16209.385508 eV Core-core repulsion = 13720.787772 eV Total energy + Delta-G solvation = -2488.597736 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.78321 -37.40835 -34.09886 -32.67605 -31.74734 -30.65751 -27.57872 -24.49597 -23.61825 -22.97367 -21.68111 -18.99171 -17.72472 -16.84392 -16.09301 -15.90144 -15.12868 -14.62000 -14.30408 -13.51358 -13.42431 -12.95488 -12.85886 -12.66184 -12.10428 -12.07635 -11.62932 -11.49185 -11.03800 -10.95415 -10.65602 -10.55157 -10.46227 -10.35420 -10.15558 -9.56905 -9.14188 -8.52096 -8.26206 -7.69735 -5.94302 -3.94897 2.75337 3.34879 3.41134 3.45432 4.09949 4.50700 4.51553 4.86577 4.96163 5.07092 5.24284 5.33366 5.41504 5.43325 5.54865 5.66546 5.83563 5.87029 5.96220 6.02808 6.08625 6.12060 6.19497 6.29316 6.45812 6.55451 6.84770 7.47985 7.61659 7.69198 7.79915 8.00920 8.33687 8.43962 9.07198 9.67409 11.17346 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.043275 B = 0.008424 C = 0.008120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.865751 B = 3323.098424 C = 3447.333610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.048 0.952 9 C 0.037 3.963 10 C -0.157 4.157 11 H 0.095 0.905 12 C 0.096 3.904 13 N -0.595 5.595 14 C 0.086 3.914 15 C -0.138 4.138 16 C -0.138 4.138 17 C -0.148 4.148 18 C 0.085 3.915 19 C 0.364 3.636 20 O -0.431 6.431 21 H 0.260 0.740 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.337 -13.687 -0.358 15.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.142 4.142 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.000 4.000 10 C -0.178 4.178 11 H 0.113 0.887 12 C -0.031 4.031 13 N -0.316 5.316 14 C -0.042 4.042 15 C -0.177 4.177 16 C -0.157 4.157 17 C -0.188 4.188 18 C -0.043 4.043 19 C 0.236 3.764 20 O -0.301 6.301 21 H 0.069 0.931 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.787 -13.458 -0.042 15.073 hybrid contribution 1.026 1.573 0.486 1.940 sum 7.813 -11.885 0.444 14.230 Atomic orbital electron populations 1.69944 1.05945 1.26476 1.51154 1.24939 0.94816 0.99054 0.95439 0.86633 0.79942 0.83761 0.77915 1.20717 1.21188 1.20051 1.21038 0.92495 0.90911 1.50090 0.93344 1.18943 0.93197 0.90117 0.97780 1.23062 1.00540 0.98220 0.95969 0.88675 1.21358 0.93253 0.85753 1.02693 1.55810 1.16754 1.36045 1.23000 1.21319 0.98258 0.96961 0.87651 1.21587 1.00631 0.95539 0.99963 1.21342 0.99428 0.96893 0.98078 1.22228 0.99652 1.01705 0.95165 1.21535 0.87428 0.98399 0.96920 1.25141 0.81558 0.79681 0.90023 1.90365 1.60747 1.38036 1.40987 0.93075 0.95781 0.95805 0.90398 0.91545 0.90995 0.91340 0.91264 0.91594 0.89660 0.90683 0.91739 0.91245 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.51 -14.69 8.40 -34.44 -0.29 -14.98 16 8 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 9 C 0.04 0.97 4.20 -27.88 -0.12 0.85 16 10 C -0.16 -3.19 1.98 -90.69 -0.18 -3.37 16 11 H 0.10 1.84 5.56 -51.93 -0.29 1.56 16 12 C 0.10 1.62 5.17 -5.39 -0.03 1.59 16 13 N -0.59 -8.30 4.04 -240.52 -0.97 -9.27 16 14 C 0.09 1.07 6.02 -5.53 -0.03 1.04 16 15 C -0.14 -1.77 5.54 -27.80 -0.15 -1.92 16 16 C -0.14 -2.12 2.88 -92.69 -0.27 -2.39 16 17 C -0.15 -1.95 5.23 -26.94 -0.14 -2.09 16 18 C 0.08 1.04 5.38 -4.41 -0.02 1.02 16 19 C 0.36 7.43 5.41 -27.98 -0.15 7.28 16 20 O -0.43 -10.75 16.55 6.00 0.10 -10.65 16 21 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 22 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.02 0.69 7.82 -51.93 -0.41 0.28 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.07 1.16 7.65 -51.93 -0.40 0.76 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.86 7.73 -51.93 -0.40 0.46 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.07 1.08 6.47 -51.93 -0.34 0.75 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.72 8.13 -51.93 -0.42 0.29 16 34 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 LS Contribution 264.72 15.07 3.99 3.99 Total: -1.00 -32.48 264.72 -7.81 -40.29 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -5.16 Total: -3.69 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -1.48 Total: -11.34 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.23 Total: -36.09 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.10 Total: -10.65 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.48 -7.81 -40.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260838052.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.203 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds