Wall clock time and date at job start Mon Mar 30 2020 03:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99512 * 2 1 4 4 H 1.48500 * 109.47292 * 269.99903 * 3 2 1 5 5 H 1.48501 * 109.47245 * 29.99872 * 3 2 1 6 6 H 1.48504 * 109.46998 * 149.99865 * 3 2 1 7 7 C 1.37870 * 120.00441 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46987 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.37916 * 307.41319 * 10 9 7 12 12 C 1.53133 * 110.43810 * 184.99926 * 10 9 7 13 13 N 1.43839 * 111.42416 * 183.21048 * 12 10 9 14 14 C 1.43784 * 118.35567 * 96.88779 * 13 12 10 15 15 C 1.52906 * 111.05164 * 275.25819 * 14 13 12 16 16 C 1.50966 * 111.75353 * 6.62684 * 15 14 13 17 17 C 1.53124 * 111.56634 * 304.91442 * 16 15 14 18 18 C 1.46324 * 115.47556 * 320.10099 * 13 12 10 19 19 C 1.50784 * 112.17459 * 64.96504 * 16 15 14 20 20 O 1.20764 * 121.92511 * 82.24338 * 19 16 15 21 21 H 0.97000 * 120.00929 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47143 * 60.00043 * 9 7 2 23 23 H 1.09000 * 109.46603 * 300.00153 * 9 7 2 24 24 H 1.08997 * 109.08779 * 62.70629 * 12 10 9 25 25 H 1.09002 * 109.08521 * 303.71197 * 12 10 9 26 26 H 1.08998 * 109.16619 * 154.85009 * 14 13 12 27 27 H 1.09004 * 109.16198 * 35.66429 * 14 13 12 28 28 H 1.08994 * 109.02734 * 246.04310 * 15 14 13 29 29 H 1.08998 * 109.02535 * 127.20971 * 15 14 13 30 30 H 1.09001 * 108.88417 * 184.75221 * 16 15 14 31 31 H 1.08994 * 109.22353 * 163.83201 * 17 16 15 32 32 H 1.09005 * 109.21858 * 283.17285 * 17 16 15 33 33 H 1.09004 * 109.19941 * 194.55892 * 18 13 12 34 34 H 1.09003 * 109.19637 * 313.84499 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4463 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 1 2.9646 -3.5474 -0.8092 12 6 1.5067 -4.9975 -0.1232 13 7 2.4158 -6.1097 -0.0495 14 6 2.5856 -6.7702 1.2163 15 6 3.6262 -6.0513 2.0757 16 6 4.0789 -4.7583 1.4414 17 6 4.6016 -4.9817 0.0195 18 6 3.6882 -5.9300 -0.7493 19 6 2.9627 -3.7490 1.3475 20 8 2.6533 -3.0502 2.2825 21 1 -0.4851 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5566 0.8903 24 1 0.9836 -5.0273 -1.0790 25 1 0.7780 -5.0786 0.6834 26 1 2.9110 -7.7961 1.0439 27 1 1.6321 -6.7823 1.7444 28 1 4.4895 -6.7034 2.2081 29 1 3.1927 -5.8353 3.0521 30 1 4.8773 -4.3290 2.0467 31 1 4.6456 -4.0251 -0.5011 32 1 5.6032 -5.4091 0.0684 33 1 4.1805 -6.8971 -0.8521 34 1 3.4972 -5.5187 -1.7405 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260838052.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:36 Heat of formation + Delta-G solvation = -60.148901 kcal Electronic energy + Delta-G solvation = -16210.342274 eV Core-core repulsion = 13720.787772 eV Total energy + Delta-G solvation = -2489.554502 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.11752 -38.97230 -35.92746 -34.30758 -33.30293 -31.83542 -29.39046 -26.20465 -24.96661 -24.05137 -23.52123 -20.35519 -19.16566 -18.63250 -17.69843 -17.37076 -16.55382 -16.25343 -15.99112 -14.99303 -14.84637 -14.43462 -14.06273 -13.99082 -13.89012 -13.51738 -13.27952 -13.05263 -12.71347 -12.60815 -12.33247 -12.16452 -11.96517 -11.69616 -11.46328 -11.29693 -11.21254 -10.62374 -10.06356 -8.87831 -8.21502 -6.30818 1.13424 1.32145 1.35179 1.45032 2.36649 2.96409 3.07772 3.15282 3.71063 3.84306 3.92831 4.07822 4.24962 4.28077 4.33193 4.43675 4.48003 4.65061 4.86794 4.97247 5.01010 5.02834 5.05395 5.10196 5.19824 5.23627 5.32587 5.37528 5.61004 5.76085 6.17458 6.41094 6.53722 6.72451 6.81454 7.35891 8.90021 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.043275 B = 0.008424 C = 0.008120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.865751 B = 3323.098424 C = 3447.333610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.047 0.953 9 C 0.044 3.956 10 C -0.157 4.157 11 H 0.108 0.892 12 C 0.109 3.891 13 N -0.591 5.591 14 C 0.082 3.918 15 C -0.134 4.134 16 C -0.131 4.131 17 C -0.145 4.145 18 C 0.081 3.919 19 C 0.358 3.642 20 O -0.491 6.491 21 H 0.263 0.737 22 H 0.007 0.993 23 H -0.018 1.018 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.109 0.891 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.683 -15.411 -1.074 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.783 3.217 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.065 0.935 9 C 0.006 3.994 10 C -0.177 4.177 11 H 0.126 0.874 12 C -0.020 4.020 13 N -0.312 5.312 14 C -0.046 4.046 15 C -0.173 4.173 16 C -0.150 4.150 17 C -0.184 4.184 18 C -0.045 4.045 19 C 0.235 3.765 20 O -0.365 6.365 21 H 0.072 0.928 22 H 0.025 0.975 23 H 0.000 1.000 24 H 0.101 0.899 25 H 0.069 0.931 26 H 0.127 0.873 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.153 -15.216 -0.783 17.774 hybrid contribution 0.275 2.084 0.715 2.221 sum 9.428 -13.132 -0.068 16.166 Atomic orbital electron populations 1.70076 1.07564 1.27592 1.52033 1.25892 0.95808 1.03120 0.95037 0.85546 0.78382 0.78944 0.78791 1.18780 1.20690 1.19805 1.21411 0.92604 0.92386 1.49774 0.93515 1.18735 0.93717 0.92121 0.94811 1.22983 0.99797 0.97928 0.97000 0.87392 1.21154 0.93427 0.84996 1.02390 1.55902 1.17429 1.33861 1.24029 1.21516 0.97970 0.98378 0.86734 1.21631 1.02180 0.94564 0.98967 1.21347 0.96917 0.96470 1.00298 1.22249 1.01703 1.01401 0.93055 1.21730 0.86360 1.00075 0.96383 1.25880 0.82115 0.79662 0.88837 1.90342 1.62826 1.40824 1.42536 0.92833 0.97484 0.99992 0.89888 0.93073 0.87310 0.92232 0.87444 0.93012 0.89425 0.92563 0.88127 0.87620 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.23 13.29 21.44 0.28 -58.94 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.96 46.88 29.54 68.60 2.03 48.91 16 4 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 7 C -0.52 -31.37 8.40 25.60 0.22 -31.16 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.04 2.41 4.20 29.85 0.13 2.53 16 10 C -0.16 -6.48 1.98 -10.84 -0.02 -6.50 16 11 H 0.11 4.18 5.56 -2.39 -0.01 4.17 16 12 C 0.11 3.63 5.17 86.92 0.45 4.08 16 13 N -0.59 -14.91 4.04 -914.86 -3.69 -18.60 16 14 C 0.08 1.75 6.02 86.85 0.52 2.28 16 15 C -0.13 -3.02 5.54 29.90 0.17 -2.85 16 16 C -0.13 -3.76 2.88 -12.13 -0.03 -3.79 16 17 C -0.14 -3.30 5.23 30.46 0.16 -3.14 16 18 C 0.08 1.67 5.38 86.24 0.46 2.13 16 19 C 0.36 14.89 5.41 29.79 0.16 15.06 16 20 O -0.49 -25.63 16.55 -1.46 -0.02 -25.66 16 21 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 22 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 23 H -0.02 -1.15 7.82 -2.39 -0.02 -1.17 16 24 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.05 1.84 7.65 -2.39 -0.02 1.83 16 26 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.39 7.73 -2.39 -0.02 1.37 16 28 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.06 1.50 6.47 -2.39 -0.02 1.49 16 32 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.11 1.52 8.13 -2.38 -0.02 1.50 16 34 H 0.08 1.59 7.92 -2.39 -0.02 1.57 16 Total: -1.00 -74.01 264.72 2.33 -71.67 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.07 Total: 3.59 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 2.67 Total: -20.97 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -3.41 Total: -77.54 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.02 Total: -25.66 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -74.01 2.33 -71.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260838052.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.526 kcal (2) G-P(sol) polarization free energy of solvation -74.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds