Wall clock time and date at job start Mon Mar 30 2020 02:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00134 * 2 1 4 4 H 1.48496 * 109.47456 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47241 * 300.00137 * 3 2 1 6 6 H 1.48497 * 109.47237 * 59.99845 * 3 2 1 7 7 C 1.37873 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99761 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00433 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.23829 * 7.26474 * 9 7 2 11 11 N 1.46928 * 110.27346 * 245.26914 * 9 7 2 12 12 C 1.34496 * 111.29491 * 257.58661 * 11 9 7 13 13 O 1.21277 * 124.94146 * 179.37224 * 12 11 9 14 14 C 1.51445 * 110.11385 * 359.23032 * 12 11 9 15 15 C 1.53808 * 110.35374 * 129.31083 * 9 7 2 16 16 C 1.52171 * 110.69621 * 336.28893 * 15 9 7 17 17 C 1.53141 * 109.57216 * 294.52746 * 16 15 9 18 18 C 1.53007 * 109.39348 * 301.23927 * 17 16 15 19 19 C 1.53005 * 109.58220 * 60.57918 * 18 17 16 20 20 C 1.52170 * 110.70216 * 212.35109 * 15 9 7 21 21 H 0.97001 * 119.99784 * 0.02562 * 1 2 3 22 22 H 0.96999 * 124.35241 * 77.32122 * 11 9 7 23 23 H 1.09000 * 110.65587 * 225.92766 * 14 12 11 24 24 H 1.09006 * 110.43013 * 103.31187 * 14 12 11 25 25 H 1.08994 * 109.46041 * 54.56705 * 16 15 9 26 26 H 1.09006 * 109.45082 * 174.50425 * 16 15 9 27 27 H 1.09003 * 109.48463 * 181.25938 * 17 16 15 28 28 H 1.09002 * 109.49207 * 61.22272 * 17 16 15 29 29 H 1.08997 * 109.45049 * 300.54593 * 18 17 16 30 30 H 1.09004 * 109.42962 * 180.60060 * 18 17 16 31 31 H 1.08999 * 109.48682 * 179.44100 * 19 18 17 32 32 H 1.09003 * 109.49677 * 59.40640 * 19 18 17 33 33 H 1.08992 * 109.45342 * 185.49747 * 20 15 9 34 34 H 1.09004 * 109.44665 * 305.45384 * 20 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.1838 -2.3185 -0.1294 11 7 1.4963 -3.2286 1.2511 12 6 2.3802 -4.2261 1.0699 13 8 2.7683 -4.9768 1.9397 14 6 2.8175 -4.2776 -0.3791 15 6 1.7743 -3.4190 -1.1167 16 6 2.4331 -2.6043 -2.2203 17 6 1.3815 -1.7310 -2.9107 18 6 0.2804 -2.6226 -3.4884 19 6 -0.3889 -3.4080 -2.3587 20 6 0.6537 -4.2899 -1.6656 21 1 -0.4850 0.8401 -0.0004 22 1 1.0778 -3.0156 2.0998 23 1 2.7998 -5.3024 -0.7499 24 1 3.8134 -3.8489 -0.4915 25 1 3.2070 -1.9689 -1.7899 26 1 2.8815 -3.2781 -2.9505 27 1 1.8506 -1.1648 -3.7154 28 1 0.9483 -1.0417 -2.1858 29 1 0.7158 -3.3182 -4.2058 30 1 -0.4629 -2.0023 -3.9892 31 1 -1.1795 -4.0351 -2.7707 32 1 -0.8158 -2.7130 -1.6357 33 1 1.0642 -4.9996 -2.3838 34 1 0.1824 -4.8336 -0.8468 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260845011.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:47 Heat of formation + Delta-G solvation = -64.220004 kcal Electronic energy + Delta-G solvation = -16543.737614 eV Core-core repulsion = 14054.006576 eV Total energy + Delta-G solvation = -2489.731038 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.05952 -37.27661 -34.47654 -32.71913 -30.81852 -30.05713 -27.48896 -25.81125 -23.04926 -21.95779 -20.55551 -19.44812 -17.80796 -16.58905 -16.34955 -14.80325 -14.61890 -14.31119 -13.68624 -13.53001 -13.24400 -13.13108 -12.46224 -12.17459 -11.84693 -11.50291 -11.30219 -11.14912 -11.09487 -10.67479 -10.51364 -10.36408 -9.99936 -9.85179 -9.57467 -9.30168 -9.13146 -8.69601 -8.62573 -7.80734 -6.25598 -4.33543 3.15486 3.26293 3.29882 3.59754 4.23835 4.57888 5.06172 5.23541 5.41884 5.47843 5.67051 5.84332 5.92380 6.07106 6.12733 6.20961 6.29269 6.34224 6.42642 6.49122 6.53429 6.67350 6.84609 6.90290 6.98115 7.07363 7.25696 7.37822 7.54430 7.67435 7.98023 8.08651 8.28865 8.75935 9.27748 9.39628 10.77192 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.014749 C = 0.010648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.839839 B = 1898.029769 C = 2629.077664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.076 3.924 3 Si 0.888 3.112 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.513 4.513 8 H 0.059 0.941 9 C 0.239 3.761 10 H 0.090 0.910 11 N -0.711 5.711 12 C 0.508 3.492 13 O -0.587 6.587 14 C -0.142 4.142 15 C -0.065 4.065 16 C -0.077 4.077 17 C -0.126 4.126 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.100 4.100 21 H 0.266 0.734 22 H 0.394 0.606 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.105 0.895 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 -2.727 -6.238 6.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.128 4.128 3 Si 0.716 3.284 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.552 4.552 8 H 0.078 0.922 9 C 0.138 3.862 10 H 0.108 0.892 11 N -0.361 5.361 12 C 0.294 3.706 13 O -0.470 6.470 14 C -0.182 4.182 15 C -0.066 4.066 16 C -0.114 4.114 17 C -0.163 4.163 18 C -0.148 4.148 19 C -0.156 4.156 20 C -0.137 4.137 21 H 0.076 0.924 22 H 0.230 0.770 23 H 0.098 0.902 24 H 0.110 0.890 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.124 0.876 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.047 -2.985 -5.942 6.650 hybrid contribution 0.293 1.106 0.351 1.197 sum 0.247 -1.880 -5.591 5.903 Atomic orbital electron populations 1.69858 1.05855 1.27266 1.49116 1.24958 0.94854 0.99283 0.93729 0.86585 0.80468 0.83529 0.77843 1.19513 1.20658 1.20893 1.21227 0.93337 0.89903 1.50702 0.92239 1.19777 0.99821 0.88529 0.78027 0.89218 1.47343 1.43092 1.31497 1.14168 1.20942 0.78981 0.80141 0.90538 1.90609 1.60811 1.46012 1.49546 1.22275 1.00843 1.01133 0.93997 1.21008 0.94012 0.95045 0.96533 1.21142 0.98160 0.96995 0.95127 1.21687 0.96039 0.98699 0.99916 1.21450 0.98142 0.98137 0.97096 1.21558 0.97072 0.98611 0.98346 1.21380 0.96268 0.97166 0.98933 0.92395 0.76999 0.90152 0.89004 0.90646 0.94730 0.94143 0.87634 0.93653 0.93260 0.93504 0.90339 0.92998 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.06 12.41 55.43 0.69 -21.37 16 2 C 0.08 1.84 4.25 -17.82 -0.08 1.76 16 3 Si 0.89 19.41 29.54 -169.99 -5.02 14.39 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.51 -12.15 5.92 -34.44 -0.20 -12.35 16 8 H 0.06 1.46 7.06 -52.48 -0.37 1.09 16 9 C 0.24 5.21 2.62 -68.43 -0.18 5.03 16 10 H 0.09 2.13 5.00 -51.93 -0.26 1.87 16 11 N -0.71 -15.48 5.88 -54.05 -0.32 -15.80 16 12 C 0.51 11.21 8.45 -10.75 -0.09 11.12 16 13 O -0.59 -14.61 18.03 5.56 0.10 -14.50 16 14 C -0.14 -2.69 5.95 -27.03 -0.16 -2.85 16 15 C -0.06 -1.22 0.51 -154.45 -0.08 -1.30 16 16 C -0.08 -1.39 4.14 -27.08 -0.11 -1.50 16 17 C -0.13 -2.31 5.62 -26.66 -0.15 -2.46 16 18 C -0.11 -1.80 5.90 -26.73 -0.16 -1.96 16 19 C -0.12 -1.98 5.75 -26.66 -0.15 -2.14 16 20 C -0.10 -1.70 4.62 -27.08 -0.13 -1.83 16 21 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 22 H 0.39 8.33 8.96 -40.82 -0.37 7.96 16 23 H 0.08 1.37 7.88 -51.93 -0.41 0.96 16 24 H 0.09 1.68 7.86 -51.93 -0.41 1.27 16 25 H 0.08 1.47 6.27 -51.93 -0.33 1.14 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.11 2.27 5.18 -51.93 -0.27 2.00 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.51 6.44 -51.93 -0.33 1.18 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 260.88 15.07 3.93 3.93 Total: -1.00 -26.34 260.88 -6.94 -33.28 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.84 Total: 8.54 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -1.49 Total: -8.46 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.37 Total: -37.17 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.10 Total: -14.50 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.34 -6.94 -33.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260845011.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.940 kcal (2) G-P(sol) polarization free energy of solvation -26.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds