Wall clock time and date at job start Mon Mar 30 2020 02:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00134 * 2 1 4 4 H 1.48496 * 109.47456 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47241 * 300.00137 * 3 2 1 6 6 H 1.48497 * 109.47237 * 59.99845 * 3 2 1 7 7 C 1.37873 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99761 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00433 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.23829 * 7.26474 * 9 7 2 11 11 N 1.46928 * 110.27346 * 245.26914 * 9 7 2 12 12 C 1.34496 * 111.29491 * 257.58661 * 11 9 7 13 13 O 1.21277 * 124.94146 * 179.37224 * 12 11 9 14 14 C 1.51445 * 110.11385 * 359.23032 * 12 11 9 15 15 C 1.53808 * 110.35374 * 129.31083 * 9 7 2 16 16 C 1.52171 * 110.69621 * 336.28893 * 15 9 7 17 17 C 1.53141 * 109.57216 * 294.52746 * 16 15 9 18 18 C 1.53007 * 109.39348 * 301.23927 * 17 16 15 19 19 C 1.53005 * 109.58220 * 60.57918 * 18 17 16 20 20 C 1.52170 * 110.70216 * 212.35109 * 15 9 7 21 21 H 0.97001 * 119.99784 * 0.02562 * 1 2 3 22 22 H 0.96999 * 124.35241 * 77.32122 * 11 9 7 23 23 H 1.09000 * 110.65587 * 225.92766 * 14 12 11 24 24 H 1.09006 * 110.43013 * 103.31187 * 14 12 11 25 25 H 1.08994 * 109.46041 * 54.56705 * 16 15 9 26 26 H 1.09006 * 109.45082 * 174.50425 * 16 15 9 27 27 H 1.09003 * 109.48463 * 181.25938 * 17 16 15 28 28 H 1.09002 * 109.49207 * 61.22272 * 17 16 15 29 29 H 1.08997 * 109.45049 * 300.54593 * 18 17 16 30 30 H 1.09004 * 109.42962 * 180.60060 * 18 17 16 31 31 H 1.08999 * 109.48682 * 179.44100 * 19 18 17 32 32 H 1.09003 * 109.49677 * 59.40640 * 19 18 17 33 33 H 1.08992 * 109.45342 * 185.49747 * 20 15 9 34 34 H 1.09004 * 109.44665 * 305.45384 * 20 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.1838 -2.3185 -0.1294 11 7 1.4963 -3.2286 1.2511 12 6 2.3802 -4.2261 1.0699 13 8 2.7683 -4.9768 1.9397 14 6 2.8175 -4.2776 -0.3791 15 6 1.7743 -3.4190 -1.1167 16 6 2.4331 -2.6043 -2.2203 17 6 1.3815 -1.7310 -2.9107 18 6 0.2804 -2.6226 -3.4884 19 6 -0.3889 -3.4080 -2.3587 20 6 0.6537 -4.2899 -1.6656 21 1 -0.4850 0.8401 -0.0004 22 1 1.0778 -3.0156 2.0998 23 1 2.7998 -5.3024 -0.7499 24 1 3.8134 -3.8489 -0.4915 25 1 3.2070 -1.9689 -1.7899 26 1 2.8815 -3.2781 -2.9505 27 1 1.8506 -1.1648 -3.7154 28 1 0.9483 -1.0417 -2.1858 29 1 0.7158 -3.3182 -4.2058 30 1 -0.4629 -2.0023 -3.9892 31 1 -1.1795 -4.0351 -2.7707 32 1 -0.8158 -2.7130 -1.6357 33 1 1.0642 -4.9996 -2.3838 34 1 0.1824 -4.8336 -0.8468 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260845011.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:47 Heat of formation + Delta-G solvation = -80.307126 kcal Electronic energy + Delta-G solvation = -16544.435203 eV Core-core repulsion = 14054.006576 eV Total energy + Delta-G solvation = -2490.428628 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.67572 -38.93915 -36.12481 -34.55695 -32.35620 -31.47463 -29.19870 -27.40710 -24.77244 -23.35517 -22.02828 -21.09755 -19.37170 -18.36724 -18.09501 -16.62752 -16.16992 -15.91013 -15.37563 -14.97218 -14.79451 -14.58027 -14.19908 -13.77173 -13.44038 -13.02753 -12.85600 -12.79643 -12.66286 -12.19222 -12.16322 -11.76986 -11.68956 -11.36710 -11.15001 -10.90789 -10.60471 -10.40031 -10.33360 -9.62249 -8.11834 -6.23321 1.38995 1.46535 1.53410 1.84526 2.42268 2.82344 3.28034 3.77023 3.92129 4.04505 4.19646 4.47479 4.53614 4.62405 4.77558 4.80387 4.92473 4.99660 5.02276 5.07539 5.16546 5.31740 5.37683 5.42826 5.59834 5.66931 5.70177 5.72420 5.86211 6.08312 6.20576 6.31048 6.54564 6.88881 7.41361 7.60680 8.90236 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.014749 C = 0.010648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.839839 B = 1898.029769 C = 2629.077664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.045 3.955 3 Si 0.933 3.067 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.289 1.289 7 C -0.512 4.512 8 H 0.049 0.951 9 C 0.240 3.760 10 H 0.070 0.930 11 N -0.714 5.714 12 C 0.501 3.499 13 O -0.618 6.618 14 C -0.135 4.135 15 C -0.060 4.060 16 C -0.074 4.074 17 C -0.129 4.129 18 C -0.106 4.106 19 C -0.116 4.116 20 C -0.097 4.097 21 H 0.265 0.735 22 H 0.391 0.609 23 H 0.107 0.893 24 H 0.100 0.900 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 -3.578 -7.970 8.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.157 4.157 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.215 1.215 7 C -0.551 4.551 8 H 0.067 0.933 9 C 0.139 3.861 10 H 0.087 0.913 11 N -0.363 5.363 12 C 0.289 3.711 13 O -0.504 6.504 14 C -0.175 4.175 15 C -0.061 4.061 16 C -0.112 4.112 17 C -0.166 4.166 18 C -0.143 4.143 19 C -0.153 4.153 20 C -0.135 4.135 21 H 0.074 0.926 22 H 0.227 0.773 23 H 0.125 0.875 24 H 0.118 0.882 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.500 -3.827 -7.686 8.601 hybrid contribution 0.106 1.382 0.929 1.669 sum 0.606 -2.445 -6.756 7.211 Atomic orbital electron populations 1.69940 1.06686 1.27519 1.50196 1.25399 0.95285 1.01264 0.93796 0.85889 0.79458 0.81119 0.77502 1.19576 1.20263 1.21513 1.21299 0.92777 0.90909 1.50149 0.93306 1.19736 0.98575 0.88823 0.78992 0.91257 1.47422 1.43051 1.31506 1.14274 1.21499 0.78445 0.79408 0.91769 1.90587 1.61821 1.47054 1.50906 1.22310 1.00998 1.02794 0.91349 1.20990 0.94609 0.94715 0.95748 1.21104 0.97585 0.97105 0.95357 1.21643 0.96761 0.98723 0.99490 1.21417 0.97552 0.98215 0.97138 1.21510 0.97662 0.98291 0.97837 1.21378 0.95576 0.97182 0.99320 0.92580 0.77290 0.87488 0.88178 0.92466 0.91714 0.93049 0.91227 0.91058 0.92881 0.91182 0.93767 0.90075 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.92 12.41 21.45 0.27 -45.65 16 2 C 0.04 2.17 4.25 84.65 0.36 2.53 16 3 Si 0.93 39.93 29.54 68.60 2.03 41.95 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.51 -24.34 5.92 25.60 0.15 -24.19 16 8 H 0.05 2.40 7.06 -2.91 -0.02 2.38 16 9 C 0.24 10.42 2.62 44.44 0.12 10.54 16 10 H 0.07 3.35 5.00 -2.39 -0.01 3.33 16 11 N -0.71 -31.17 5.88 -443.45 -2.61 -33.78 16 12 C 0.50 21.71 8.45 87.94 0.74 22.46 16 13 O -0.62 -30.47 18.03 -3.02 -0.05 -30.52 16 14 C -0.13 -4.76 5.95 30.40 0.18 -4.58 16 15 C -0.06 -2.12 0.51 -52.14 -0.03 -2.15 16 16 C -0.07 -2.50 4.14 30.37 0.13 -2.37 16 17 C -0.13 -4.47 5.62 30.64 0.17 -4.30 16 18 C -0.11 -3.13 5.90 30.60 0.18 -2.95 16 19 C -0.12 -3.62 5.75 30.64 0.18 -3.45 16 20 C -0.10 -3.03 4.62 30.37 0.14 -2.89 16 21 H 0.26 13.00 8.31 -92.71 -0.77 12.23 16 22 H 0.39 16.89 8.96 -92.71 -0.83 16.06 16 23 H 0.11 3.23 7.88 -2.39 -0.02 3.21 16 24 H 0.10 3.40 7.86 -2.38 -0.02 3.38 16 25 H 0.06 2.13 6.27 -2.39 -0.01 2.12 16 26 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 2.97 5.18 -2.39 -0.01 2.96 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.69 6.44 -2.39 -0.02 1.68 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -55.78 260.88 2.22 -53.56 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.27 Total: 25.79 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 2.32 Total: -11.35 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -2.34 Total: -79.43 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.05 Total: -30.52 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.95 kcal Total: -55.78 2.22 -53.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260845011.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.747 kcal (2) G-P(sol) polarization free energy of solvation -55.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds