Wall clock time and date at job start Mon Mar 30 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 6 6 C 1.50699 * 109.47078 * 60.00337 * 5 2 1 7 7 N 1.30259 * 125.62140 * 89.69100 * 6 5 2 8 8 C 1.34480 * 108.70161 * 179.83981 * 7 6 5 9 9 C 1.34332 * 107.66714 * 0.42171 * 8 7 6 10 10 C 1.50703 * 126.44214 * 179.76541 * 9 8 7 11 11 C 1.50698 * 109.46867 * 89.97776 * 10 9 8 12 12 H 1.08002 * 120.00402 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00006 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99834 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00149 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47295 * 89.99894 * 15 13 11 17 17 H 1.48502 * 109.47270 * 210.00337 * 15 13 11 18 18 H 1.48500 * 109.46935 * 329.99938 * 15 13 11 19 19 O 1.33966 * 125.62002 * 270.00137 * 6 5 2 20 20 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 23 23 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 24 24 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 26 26 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 27 27 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 28 28 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 5 2 1 30 30 H 1.08996 * 109.46952 * 300.00302 * 5 2 1 31 31 H 1.08000 * 126.16650 * 180.16926 * 8 7 6 32 32 H 1.08991 * 109.47066 * 209.97999 * 10 9 8 33 33 H 1.08996 * 109.47115 * 329.97749 * 10 9 8 34 34 H 0.97005 * 120.00202 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0401 -0.7213 -1.2492 6 6 1.5378 -0.0109 -2.4797 7 7 2.1468 0.9619 -3.0958 8 6 1.4011 1.3387 -4.1496 9 6 0.2985 0.5715 -4.1640 10 6 -0.8271 0.6406 -5.1636 11 6 -0.5321 -0.2834 -6.3169 12 1 0.3795 -0.8625 -6.3255 13 6 -1.4260 -0.3897 -7.3613 14 7 -2.5359 0.3158 -7.3511 15 14 -1.0607 -1.5355 -8.7905 16 1 -1.6197 -2.8807 -8.5020 17 1 -1.6805 -0.9968 -10.0278 18 1 0.4087 -1.6400 -8.9781 19 8 0.3885 -0.2717 -3.1167 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 -1.7489 1.2493 27 1 3.1300 -0.7217 1.2491 28 1 1.6766 -0.2074 2.1393 29 1 3.1301 -0.7217 -1.2490 30 1 1.6767 -1.7489 -1.2492 31 1 1.6430 2.1202 -4.8546 32 1 -1.7578 0.3376 -4.6841 33 1 -0.9239 1.6619 -5.5318 34 1 -3.1646 0.2414 -8.0860 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260947186.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:30 Heat of formation + Delta-G solvation = -11.284821 kcal Electronic energy + Delta-G solvation = -15253.325577 eV Core-core repulsion = 12765.889981 eV Total energy + Delta-G solvation = -2487.435596 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.52524 -37.58106 -33.86731 -33.56537 -31.12684 -28.77759 -27.27823 -27.15427 -25.69455 -23.06344 -21.41933 -20.23457 -18.82341 -16.72496 -16.10550 -15.82566 -14.76329 -14.61435 -14.30408 -14.09768 -13.31944 -13.03660 -12.50210 -12.43341 -12.21365 -12.01666 -11.68193 -11.58600 -11.44749 -10.98825 -10.85031 -10.81094 -10.73360 -10.65481 -10.39677 -10.18664 -9.66931 -9.60536 -8.55596 -7.72016 -6.17551 -4.23235 2.34701 3.25269 3.31166 3.34673 3.45660 3.50895 4.35346 4.58418 4.77541 4.83617 5.07968 5.17916 5.44963 5.48632 5.59635 5.73622 5.77935 5.82485 5.89981 5.97504 6.01103 6.11875 6.13133 6.20062 6.38360 6.45156 6.53700 6.82332 7.12228 7.27314 7.43951 7.76631 8.07994 8.53530 8.79318 9.41474 10.91924 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.051302 B = 0.005833 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.660477 B = 4799.171899 C = 4818.400400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.066 4.066 3 C -0.140 4.140 4 C -0.138 4.138 5 C -0.007 4.007 6 C 0.149 3.851 7 N -0.478 5.478 8 C -0.087 4.087 9 C 0.024 3.976 10 C 0.091 3.909 11 C -0.521 4.521 12 H 0.059 0.941 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.902 3.098 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 O -0.202 6.202 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.174 0.826 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.594 -0.872 13.559 15.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 C -0.197 4.197 4 C -0.196 4.196 5 C -0.045 4.045 6 C -0.058 4.058 7 N -0.208 5.208 8 C -0.225 4.225 9 C -0.030 4.030 10 C 0.054 3.946 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.729 3.271 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.197 1.197 19 O -0.089 6.089 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.191 0.809 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.977 -0.616 13.656 15.347 hybrid contribution -0.524 -0.788 -1.219 1.544 sum 6.453 -1.404 12.436 14.081 Atomic orbital electron populations 1.21916 0.94124 1.02081 1.01978 1.20559 0.96192 0.96204 0.93754 1.21880 1.01021 0.94901 1.01932 1.21841 1.00999 1.00150 0.96587 1.20045 1.00956 0.97725 0.85759 1.25671 0.84229 0.97498 0.98376 1.70241 1.31277 1.11833 1.07440 1.22826 0.93834 1.06029 0.99791 1.24797 1.01010 0.89240 0.87931 1.18020 0.88501 0.99415 0.88657 1.20981 1.06240 1.25087 1.03632 0.92246 1.24977 0.94757 0.95904 0.98375 1.69938 1.09992 1.40408 1.32640 0.86424 0.78696 0.80692 0.81287 1.20421 1.20925 1.19679 1.84420 1.38338 1.51334 1.34771 0.92303 0.92435 0.92696 0.93122 0.92516 0.91811 0.92475 0.92459 0.92377 0.88529 0.89619 0.80863 0.94316 0.92599 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.21 37.16 0.31 -1.53 16 2 C -0.07 -0.79 0.80 -154.51 -0.12 -0.91 16 3 C -0.14 -1.75 8.18 37.16 0.30 -1.45 16 4 C -0.14 -1.26 8.47 37.16 0.31 -0.94 16 5 C -0.01 -0.09 4.91 -27.88 -0.14 -0.23 16 6 C 0.15 2.78 5.62 -12.95 -0.07 2.71 16 7 N -0.48 -9.63 10.47 -11.10 -0.12 -9.75 16 8 C -0.09 -1.87 11.80 -17.77 -0.21 -2.08 16 9 C 0.02 0.55 6.58 -35.69 -0.23 0.31 16 10 C 0.09 2.35 5.53 -29.03 -0.16 2.19 16 11 C -0.52 -14.60 9.09 -34.44 -0.31 -14.91 16 12 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 15 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 O -0.20 -4.40 10.12 5.37 0.05 -4.34 16 20 H 0.06 0.92 6.72 -51.93 -0.35 0.57 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.98 6.64 -51.93 -0.34 0.63 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.17 3.39 8.06 -52.49 -0.42 2.97 16 32 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 286.44 15.07 4.32 4.32 Total: -1.00 -29.79 286.44 -5.76 -35.55 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.31 Total: -1.89 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -0.42 Total: -15.20 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.62 Total: -34.73 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: 0.05 Total: -4.34 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.79 -5.76 -35.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260947186.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.264 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds