Wall clock time and date at job start Mon Mar 30 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 6 6 C 1.50699 * 109.47078 * 60.00337 * 5 2 1 7 7 N 1.30259 * 125.62140 * 89.69100 * 6 5 2 8 8 C 1.34480 * 108.70161 * 179.83981 * 7 6 5 9 9 C 1.34332 * 107.66714 * 0.42171 * 8 7 6 10 10 C 1.50703 * 126.44214 * 179.76541 * 9 8 7 11 11 C 1.50698 * 109.46867 * 89.97776 * 10 9 8 12 12 H 1.08002 * 120.00402 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00006 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99834 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00149 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47295 * 89.99894 * 15 13 11 17 17 H 1.48502 * 109.47270 * 210.00337 * 15 13 11 18 18 H 1.48500 * 109.46935 * 329.99938 * 15 13 11 19 19 O 1.33966 * 125.62002 * 270.00137 * 6 5 2 20 20 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 23 23 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 24 24 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 26 26 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 27 27 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 28 28 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 5 2 1 30 30 H 1.08996 * 109.46952 * 300.00302 * 5 2 1 31 31 H 1.08000 * 126.16650 * 180.16926 * 8 7 6 32 32 H 1.08991 * 109.47066 * 209.97999 * 10 9 8 33 33 H 1.08996 * 109.47115 * 329.97749 * 10 9 8 34 34 H 0.97005 * 120.00202 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0401 -0.7213 -1.2492 6 6 1.5378 -0.0109 -2.4797 7 7 2.1468 0.9619 -3.0958 8 6 1.4011 1.3387 -4.1496 9 6 0.2985 0.5715 -4.1640 10 6 -0.8271 0.6406 -5.1636 11 6 -0.5321 -0.2834 -6.3169 12 1 0.3795 -0.8625 -6.3255 13 6 -1.4260 -0.3897 -7.3613 14 7 -2.5359 0.3158 -7.3511 15 14 -1.0607 -1.5355 -8.7905 16 1 -1.6197 -2.8807 -8.5020 17 1 -1.6805 -0.9968 -10.0278 18 1 0.4087 -1.6400 -8.9781 19 8 0.3885 -0.2717 -3.1167 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 -1.7489 1.2493 27 1 3.1300 -0.7217 1.2491 28 1 1.6766 -0.2074 2.1393 29 1 3.1301 -0.7217 -1.2490 30 1 1.6767 -1.7489 -1.2492 31 1 1.6430 2.1202 -4.8546 32 1 -1.7578 0.3376 -4.6841 33 1 -0.9239 1.6619 -5.5318 34 1 -3.1646 0.2414 -8.0860 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260947186.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:30 Heat of formation + Delta-G solvation = -29.964989 kcal Electronic energy + Delta-G solvation = -15254.135610 eV Core-core repulsion = 12765.889981 eV Total energy + Delta-G solvation = -2488.245629 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.17830 -38.59805 -35.65046 -35.50719 -32.94612 -30.30233 -28.17302 -28.11561 -27.39404 -24.98550 -23.05131 -21.90125 -19.88249 -18.77375 -17.70748 -17.46462 -16.65314 -15.71620 -15.47608 -15.31920 -14.96277 -14.45219 -14.31185 -13.93063 -13.49712 -13.44161 -12.89759 -12.82594 -12.69281 -12.61309 -12.53748 -12.16477 -12.12848 -11.84882 -11.71392 -11.61197 -11.59205 -11.38900 -10.69134 -9.44227 -8.29936 -6.45346 0.69000 1.39103 1.39779 1.51589 1.81012 1.91414 2.37050 3.02005 3.20061 3.79327 3.84711 4.02587 4.22730 4.31293 4.49201 4.54863 4.66517 4.76993 4.83120 4.88644 4.93034 5.00342 5.06129 5.09885 5.14795 5.21423 5.32653 5.42869 5.44409 5.51098 5.59330 5.61101 5.96411 6.62062 6.88401 7.23967 8.79259 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.051302 B = 0.005833 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.660477 B = 4799.171899 C = 4818.400400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.061 4.061 3 C -0.139 4.139 4 C -0.132 4.132 5 C -0.013 4.013 6 C 0.171 3.829 7 N -0.492 5.492 8 C -0.078 4.078 9 C -0.013 4.013 10 C 0.102 3.898 11 C -0.543 4.543 12 H 0.052 0.948 13 C 0.014 3.986 14 N -0.923 5.923 15 Si 0.971 3.029 16 H -0.271 1.271 17 H -0.273 1.273 18 H -0.268 1.268 19 O -0.216 6.216 20 H 0.020 0.980 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.186 0.814 32 H 0.014 0.986 33 H 0.045 0.955 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.010 -2.082 14.685 16.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.062 4.062 3 C -0.196 4.196 4 C -0.189 4.189 5 C -0.051 4.051 6 C -0.036 4.036 7 N -0.222 5.222 8 C -0.214 4.214 9 C -0.066 4.066 10 C 0.065 3.935 11 C -0.581 4.581 12 H 0.070 0.930 13 C -0.186 4.186 14 N -0.561 5.561 15 Si 0.795 3.205 16 H -0.196 1.196 17 H -0.198 1.198 18 H -0.192 1.192 19 O -0.104 6.104 20 H 0.040 0.960 21 H 0.082 0.918 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.122 0.878 31 H 0.204 0.796 32 H 0.033 0.967 33 H 0.063 0.937 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.401 -1.809 14.786 17.102 hybrid contribution -0.939 -0.391 -1.442 1.764 sum 7.462 -2.200 13.344 15.446 Atomic orbital electron populations 1.21932 0.95078 1.02180 1.00939 1.20571 0.95339 0.96011 0.94292 1.21870 1.01569 0.95166 1.00997 1.21794 1.01834 1.00342 0.94914 1.20512 1.02192 0.98292 0.84055 1.26907 0.82354 0.96070 0.98223 1.70314 1.31442 1.12882 1.07519 1.23053 0.93104 1.05373 0.99918 1.24275 1.01471 0.91613 0.89264 1.17658 0.88609 0.98295 0.88962 1.21237 1.06268 1.25729 1.04860 0.92994 1.25865 0.94358 0.97331 1.01005 1.70038 1.10819 1.41595 1.33693 0.85357 0.78689 0.78616 0.77878 1.19598 1.19840 1.19207 1.84398 1.39817 1.51443 1.34744 0.96042 0.91791 0.91016 0.91533 0.91579 0.95281 0.91439 0.91123 0.91246 0.86411 0.87835 0.79649 0.96729 0.93746 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.21 71.98 0.59 -2.90 16 2 C -0.06 -1.30 0.80 -52.18 -0.04 -1.34 16 3 C -0.14 -3.20 8.18 71.98 0.59 -2.61 16 4 C -0.13 -1.86 8.47 71.98 0.61 -1.25 16 5 C -0.01 -0.31 4.91 29.85 0.15 -0.17 16 6 C 0.17 6.30 5.62 88.34 0.50 6.80 16 7 N -0.49 -19.67 10.47 -303.82 -3.18 -22.85 16 8 C -0.08 -3.38 11.80 83.39 0.98 -2.40 16 9 C -0.01 -0.64 6.58 24.79 0.16 -0.47 16 10 C 0.10 5.51 5.53 29.10 0.16 5.68 16 11 C -0.54 -31.21 9.09 25.60 0.23 -30.97 16 12 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 13 C 0.01 0.79 5.46 84.66 0.46 1.25 16 14 N -0.92 -54.12 13.29 21.45 0.28 -53.84 16 15 Si 0.97 43.70 29.54 68.60 2.03 45.72 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 19 O -0.22 -9.59 10.12 -3.71 -0.04 -9.63 16 20 H 0.02 0.66 6.72 -2.39 -0.02 0.64 16 21 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.03 0.86 6.64 -2.39 -0.02 0.85 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.19 7.37 8.06 -2.91 -0.02 7.35 16 32 H 0.01 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.04 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 Total: -1.00 -64.98 286.44 4.55 -60.43 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.06 Total: 8.55 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 4.40 Total: -28.39 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -2.90 Total: -76.69 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.04 Total: -9.63 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -64.98 4.55 -60.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260947186.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.469 kcal (2) G-P(sol) polarization free energy of solvation -64.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds