Wall clock time and date at job start Mon Mar 30 2020 03:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47027 * 2 1 4 4 C 1.53003 * 109.47021 * 240.00467 * 2 1 3 5 5 C 1.52992 * 109.47372 * 120.00240 * 2 1 3 6 6 C 1.50699 * 109.47257 * 59.99692 * 5 2 1 7 7 N 1.30254 * 125.61568 * 90.00345 * 6 5 2 8 8 C 1.34483 * 108.70003 * 180.02562 * 7 6 5 9 9 C 1.50706 * 126.16500 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46831 * 264.99874 * 9 8 7 11 11 H 1.07997 * 120.00004 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99660 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00496 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99772 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47491 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47127 * 119.99858 * 14 12 10 17 17 H 1.48507 * 109.46865 * 239.99773 * 14 12 10 18 18 C 1.34322 * 107.66912 * 359.97438 * 8 7 6 19 19 O 1.33960 * 125.62305 * 270.02834 * 6 5 2 20 20 H 1.08998 * 109.47019 * 300.00041 * 1 2 3 21 21 H 1.09003 * 109.47233 * 59.99745 * 1 2 3 22 22 H 1.08997 * 109.47037 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47024 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.47323 * 300.00200 * 3 2 1 25 25 H 1.08998 * 109.47254 * 60.00103 * 3 2 1 26 26 H 1.08997 * 109.46786 * 299.99300 * 4 2 1 27 27 H 1.08994 * 109.47206 * 59.99989 * 4 2 1 28 28 H 1.09005 * 109.46939 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47257 * 299.99676 * 5 2 1 30 30 H 1.09001 * 109.47522 * 180.02562 * 5 2 1 31 31 H 1.08998 * 109.47048 * 24.99913 * 9 8 7 32 32 H 1.08996 * 109.46686 * 145.00301 * 9 8 7 33 33 H 0.96992 * 120.00374 * 180.02562 * 13 12 10 34 34 H 1.08003 * 126.44526 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2491 6 6 1.5377 -2.1420 1.2492 7 7 2.1494 -3.1629 0.7197 8 6 1.4008 -4.2629 0.9149 9 6 1.7379 -5.6601 0.4616 10 6 1.0774 -5.9306 -0.8656 11 1 0.4742 -5.1671 -1.3342 12 6 1.2432 -7.1529 -1.4816 13 7 1.9781 -8.0825 -0.9112 14 14 0.4251 -7.4881 -3.1271 15 1 -0.3407 -6.2890 -3.5527 16 1 1.4636 -7.7987 -4.1421 17 1 -0.4986 -8.6434 -2.9945 18 6 0.2984 -3.8918 1.5866 19 8 0.3883 -2.5632 1.7932 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 -1.7488 -1.2493 27 1 1.6767 -0.2073 -2.1392 28 1 3.1301 -0.7216 -1.2491 29 1 1.6768 -0.2074 2.1392 30 1 3.1301 -0.7209 1.2494 31 1 2.8185 -5.7570 0.3562 32 1 1.3789 -6.3778 1.1992 33 1 2.0951 -8.9422 -1.3448 34 1 -0.5089 -4.5368 1.9011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260952697.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:33 Heat of formation + Delta-G solvation = -8.847076 kcal Electronic energy + Delta-G solvation = -15348.369084 eV Core-core repulsion = 12861.039197 eV Total energy + Delta-G solvation = -2487.329888 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.55755 -37.56188 -34.51904 -32.87256 -30.88357 -28.33535 -27.27665 -27.06905 -26.13347 -23.35280 -21.00225 -20.17442 -18.69255 -16.49394 -16.31847 -15.84091 -14.70878 -14.57604 -14.44193 -14.21924 -13.53062 -13.00264 -12.46792 -12.39606 -12.15865 -11.93407 -11.65446 -11.54611 -11.21438 -10.93046 -10.78449 -10.73031 -10.66049 -10.58303 -10.27410 -9.89869 -9.57480 -9.28528 -8.42103 -7.82837 -6.03926 -4.06772 2.22384 3.30231 3.37173 3.41712 3.42086 3.60696 4.45353 4.56742 4.78525 4.84250 5.08644 5.31635 5.42500 5.48549 5.60242 5.71835 5.80547 5.83363 5.94759 6.00971 6.05552 6.12502 6.15605 6.22948 6.38778 6.53029 6.65222 6.69782 7.26671 7.50902 7.63285 7.92070 8.31365 8.63932 8.96549 9.56414 11.06599 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.034690 B = 0.006958 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.948982 B = 4023.157717 C = 4392.281971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.066 4.066 3 C -0.138 4.138 4 C -0.144 4.144 5 C -0.008 4.008 6 C 0.168 3.832 7 N -0.472 5.472 8 C 0.038 3.962 9 C 0.087 3.913 10 C -0.509 4.509 11 H 0.055 0.945 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.113 4.113 19 O -0.215 6.215 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.262 0.738 34 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 15.686 3.556 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.067 4.067 3 C -0.195 4.195 4 C -0.201 4.201 5 C -0.046 4.046 6 C -0.038 4.038 7 N -0.203 5.203 8 C -0.081 4.081 9 C 0.050 3.950 10 C -0.547 4.547 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.181 4.181 19 O -0.103 6.103 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.276 15.569 3.255 15.957 hybrid contribution -1.167 -0.540 -0.582 1.412 sum -2.443 15.029 2.674 15.459 Atomic orbital electron populations 1.21913 0.94310 1.02391 1.01412 1.20559 0.96052 0.95146 0.94948 1.21839 1.01137 0.94725 1.01824 1.21912 1.01278 1.01314 0.95582 1.20097 1.01325 0.84217 0.98992 1.25955 0.83283 0.97663 0.96922 1.70427 1.31601 0.98199 1.20044 1.22712 0.91183 0.97491 0.96749 1.17747 0.98474 0.82548 0.96226 1.21043 1.30607 0.98921 1.04147 0.92644 1.24977 0.95363 0.96073 0.97845 1.69958 1.39128 1.05340 1.38898 0.86468 0.79242 0.78178 0.83755 1.19766 1.20864 1.20913 1.24662 1.03777 0.80670 1.09038 1.84321 1.39043 1.24226 1.62705 0.92687 0.92626 0.92316 0.92355 0.92342 0.92619 0.91342 0.93085 0.92336 0.89734 0.88228 0.94469 0.94636 0.92847 0.77612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.21 37.16 0.31 -1.47 16 2 C -0.07 -0.81 0.80 -154.51 -0.12 -0.93 16 3 C -0.14 -1.27 8.47 37.16 0.31 -0.96 16 4 C -0.14 -2.06 8.19 37.16 0.30 -1.76 16 5 C -0.01 -0.11 4.91 -27.89 -0.14 -0.25 16 6 C 0.17 3.08 5.62 -12.95 -0.07 3.00 16 7 N -0.47 -10.45 10.49 -7.36 -0.08 -10.52 16 8 C 0.04 0.90 6.30 -82.81 -0.52 0.38 16 9 C 0.09 2.35 5.52 -29.03 -0.16 2.19 16 10 C -0.51 -14.64 9.09 -34.44 -0.31 -14.95 16 11 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 14 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 C -0.11 -2.29 12.08 29.35 0.35 -1.93 16 19 O -0.22 -4.04 10.12 5.37 0.05 -3.99 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.89 6.72 -51.93 -0.35 0.54 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 1.25 6.65 -51.93 -0.35 0.90 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.21 3.55 8.06 -52.48 -0.42 3.13 16 LS Contribution 286.45 15.07 4.32 4.32 Total: -1.00 -31.48 286.45 -5.45 -36.92 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -5.31 Total: -2.51 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -0.15 Total: -15.08 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.66 Total: -36.50 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: 0.05 Total: -3.99 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.48 -5.45 -36.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260952697.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.075 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds