Wall clock time and date at job start Mon Mar 30 2020 03:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47027 * 2 1 4 4 C 1.53003 * 109.47021 * 240.00467 * 2 1 3 5 5 C 1.52992 * 109.47372 * 120.00240 * 2 1 3 6 6 C 1.50699 * 109.47257 * 59.99692 * 5 2 1 7 7 N 1.30254 * 125.61568 * 90.00345 * 6 5 2 8 8 C 1.34483 * 108.70003 * 180.02562 * 7 6 5 9 9 C 1.50706 * 126.16500 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46831 * 264.99874 * 9 8 7 11 11 H 1.07997 * 120.00004 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99660 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00496 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99772 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47491 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47127 * 119.99858 * 14 12 10 17 17 H 1.48507 * 109.46865 * 239.99773 * 14 12 10 18 18 C 1.34322 * 107.66912 * 359.97438 * 8 7 6 19 19 O 1.33960 * 125.62305 * 270.02834 * 6 5 2 20 20 H 1.08998 * 109.47019 * 300.00041 * 1 2 3 21 21 H 1.09003 * 109.47233 * 59.99745 * 1 2 3 22 22 H 1.08997 * 109.47037 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47024 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.47323 * 300.00200 * 3 2 1 25 25 H 1.08998 * 109.47254 * 60.00103 * 3 2 1 26 26 H 1.08997 * 109.46786 * 299.99300 * 4 2 1 27 27 H 1.08994 * 109.47206 * 59.99989 * 4 2 1 28 28 H 1.09005 * 109.46939 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47257 * 299.99676 * 5 2 1 30 30 H 1.09001 * 109.47522 * 180.02562 * 5 2 1 31 31 H 1.08998 * 109.47048 * 24.99913 * 9 8 7 32 32 H 1.08996 * 109.46686 * 145.00301 * 9 8 7 33 33 H 0.96992 * 120.00374 * 180.02562 * 13 12 10 34 34 H 1.08003 * 126.44526 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2491 6 6 1.5377 -2.1420 1.2492 7 7 2.1494 -3.1629 0.7197 8 6 1.4008 -4.2629 0.9149 9 6 1.7379 -5.6601 0.4616 10 6 1.0774 -5.9306 -0.8656 11 1 0.4742 -5.1671 -1.3342 12 6 1.2432 -7.1529 -1.4816 13 7 1.9781 -8.0825 -0.9112 14 14 0.4251 -7.4881 -3.1271 15 1 -0.3407 -6.2890 -3.5527 16 1 1.4636 -7.7987 -4.1421 17 1 -0.4986 -8.6434 -2.9945 18 6 0.2984 -3.8918 1.5866 19 8 0.3883 -2.5632 1.7932 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 -1.7488 -1.2493 27 1 1.6767 -0.2073 -2.1392 28 1 3.1301 -0.7216 -1.2491 29 1 1.6768 -0.2074 2.1392 30 1 3.1301 -0.7209 1.2494 31 1 2.8185 -5.7570 0.3562 32 1 1.3789 -6.3778 1.1992 33 1 2.0951 -8.9422 -1.3448 34 1 -0.5089 -4.5368 1.9011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260952697.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:32 Heat of formation + Delta-G solvation = -29.866274 kcal Electronic energy + Delta-G solvation = -15349.280545 eV Core-core repulsion = 12861.039197 eV Total energy + Delta-G solvation = -2488.241348 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.13990 -38.58132 -36.32636 -34.89784 -32.55403 -30.04634 -28.16498 -28.13714 -27.64876 -25.42987 -22.48723 -21.86504 -19.79092 -18.62425 -17.85625 -17.46846 -16.58861 -15.78442 -15.67514 -15.33010 -15.02732 -14.46912 -14.27077 -13.93503 -13.54332 -13.25237 -12.88924 -12.77026 -12.66614 -12.55347 -12.51270 -12.14027 -11.96758 -11.86269 -11.70120 -11.59142 -11.29152 -11.27075 -10.64864 -9.50372 -8.25061 -6.37746 0.68325 1.36676 1.37777 1.50872 1.90563 1.96596 2.39515 3.05790 3.21610 3.79585 3.84957 4.02917 4.23587 4.34457 4.50600 4.62182 4.66053 4.79485 4.88290 4.92804 4.93105 5.03463 5.05878 5.13754 5.20717 5.24891 5.34076 5.43091 5.48601 5.51044 5.62611 5.67956 6.11050 6.71354 7.01252 7.30383 8.85719 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.034690 B = 0.006958 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.948982 B = 4023.157717 C = 4392.281971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.061 4.061 3 C -0.131 4.131 4 C -0.143 4.143 5 C -0.012 4.012 6 C 0.189 3.811 7 N -0.512 5.512 8 C -0.003 4.003 9 C 0.099 3.901 10 C -0.528 4.528 11 H 0.047 0.953 12 C 0.008 3.992 13 N -0.927 5.927 14 Si 0.968 3.032 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.269 1.269 18 C -0.097 4.097 19 O -0.207 6.207 20 H 0.075 0.925 21 H 0.066 0.934 22 H 0.022 0.978 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.021 0.979 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.000 1.000 32 H 0.023 0.977 33 H 0.268 0.732 34 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.837 17.992 3.435 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.062 4.062 3 C -0.188 4.188 4 C -0.200 4.200 5 C -0.050 4.050 6 C -0.018 4.018 7 N -0.242 5.242 8 C -0.122 4.122 9 C 0.062 3.938 10 C -0.566 4.566 11 H 0.065 0.935 12 C -0.191 4.191 13 N -0.567 5.567 14 Si 0.792 3.208 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.194 1.194 18 C -0.166 4.166 19 O -0.095 6.095 20 H 0.094 0.906 21 H 0.085 0.915 22 H 0.042 0.958 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.041 0.959 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.137 0.863 30 H 0.128 0.872 31 H 0.019 0.981 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.225 17.872 3.140 18.282 hybrid contribution -0.836 -1.191 -0.520 1.545 sum -3.060 16.681 2.619 17.160 Atomic orbital electron populations 1.21914 0.94375 1.00521 1.03075 1.20569 0.95936 0.96786 0.92926 1.21786 1.01636 0.92059 1.03292 1.21902 1.01285 0.99034 0.97795 1.20531 1.02060 0.81261 1.01129 1.26988 0.82068 0.98751 0.93994 1.70338 1.32951 0.98866 1.22075 1.22297 0.93467 0.96671 0.99744 1.17382 0.95838 0.84995 0.95619 1.21267 1.31033 0.99153 1.05185 0.93461 1.25889 0.95762 0.95624 1.01777 1.70068 1.40077 1.05884 1.40683 0.85358 0.78400 0.78340 0.78699 1.19379 1.20147 1.19421 1.24953 1.03035 0.81394 1.07224 1.84363 1.39248 1.23320 1.62554 0.90580 0.91508 0.95829 0.91606 0.91519 0.90563 0.95930 0.91764 0.92291 0.86271 0.87170 0.98122 0.95860 0.92329 0.75042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.21 71.98 0.59 -2.59 16 2 C -0.06 -1.34 0.80 -52.18 -0.04 -1.38 16 3 C -0.13 -1.87 8.47 71.98 0.61 -1.26 16 4 C -0.14 -4.00 8.19 71.98 0.59 -3.41 16 5 C -0.01 -0.29 4.91 29.85 0.15 -0.14 16 6 C 0.19 6.78 5.62 88.34 0.50 7.28 16 7 N -0.51 -23.28 10.49 -291.99 -3.06 -26.34 16 8 C 0.00 -0.17 6.30 41.26 0.26 0.09 16 9 C 0.10 5.64 5.52 29.10 0.16 5.80 16 10 C -0.53 -31.49 9.09 25.60 0.23 -31.26 16 11 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 12 C 0.01 0.47 5.46 84.65 0.46 0.93 16 13 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 14 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 18 C -0.10 -3.93 12.08 66.92 0.81 -3.12 16 19 O -0.21 -7.56 10.12 -3.70 -0.04 -7.59 16 20 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 21 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.02 0.68 6.72 -2.39 -0.02 0.66 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.02 0.82 6.65 -2.39 -0.02 0.80 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.02 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.23 7.84 8.06 -2.91 -0.02 7.82 16 Total: -1.00 -70.73 286.45 4.58 -66.15 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.06 Total: 5.93 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 4.32 Total: -29.05 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -2.78 Total: -82.76 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.04 Total: -7.59 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -70.73 4.58 -66.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260952697.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.279 kcal (2) G-P(sol) polarization free energy of solvation -70.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds