Wall clock time and date at job start Mon Mar 30 2020 02:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00171 * 2 1 4 4 H 1.48493 * 109.47037 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47046 * 120.00057 * 3 2 1 6 6 H 1.48499 * 109.47094 * 239.99980 * 3 2 1 7 7 C 1.37881 * 119.99942 * 179.72622 * 2 1 3 8 8 H 1.08005 * 119.99818 * 18.24584 * 7 2 1 9 9 C 1.50694 * 120.00126 * 198.25332 * 7 2 1 10 10 H 1.09005 * 109.49320 * 305.56368 * 9 7 2 11 11 C 1.53058 * 109.49985 * 65.62092 * 9 7 2 12 12 C 1.53076 * 109.27874 * 58.37042 * 11 9 7 13 13 N 1.47736 * 108.72198 * 55.41601 * 12 11 9 14 14 C 1.34086 * 117.82732 * 126.35159 * 13 12 11 15 15 O 1.21278 * 118.75955 * 358.51386 * 14 13 12 16 16 C 1.50305 * 122.50005 * 179.97438 * 14 13 12 17 17 C 1.53313 * 108.24618 * 333.00139 * 16 14 13 18 18 C 1.52783 * 108.19667 * 56.63476 * 17 16 14 19 19 C 1.45681 * 118.13446 * 306.16433 * 13 12 11 20 20 H 1.08999 * 108.09358 * 295.79405 * 19 13 12 21 21 C 1.53035 * 109.49345 * 185.48773 * 9 7 2 22 22 H 0.97001 * 119.99889 * 174.69748 * 1 2 3 23 23 H 1.09000 * 109.50735 * 178.31076 * 11 9 7 24 24 H 1.08997 * 109.50224 * 298.39249 * 11 9 7 25 25 H 1.08995 * 109.59411 * 175.18729 * 12 11 9 26 26 H 1.08997 * 109.59546 * 295.49451 * 12 11 9 27 27 H 1.09001 * 109.33359 * 213.62129 * 16 14 13 28 28 H 1.08998 * 110.17582 * 92.86837 * 16 14 13 29 29 H 1.09001 * 109.71608 * 296.95936 * 17 16 14 30 30 H 1.09001 * 109.71998 * 176.31415 * 17 16 14 31 31 H 1.09001 * 109.14669 * 176.37060 * 18 17 16 32 32 H 1.08998 * 109.15131 * 57.21245 * 18 17 16 33 33 H 1.09002 * 109.48740 * 60.64354 * 21 9 7 34 34 H 1.09007 * 109.48424 * 180.69318 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 0.0057 8 1 1.5052 -2.1073 -0.2828 9 6 3.4546 -1.2250 0.4146 10 1 4.0184 -0.5148 -0.1904 11 6 3.5768 -0.8468 1.8927 12 6 2.7517 -1.8237 2.7342 13 7 3.1970 -3.2003 2.4354 14 6 3.5606 -3.9780 3.4654 15 8 3.5346 -3.5131 4.5853 16 6 4.0296 -5.3941 3.2820 17 6 3.3976 -5.9468 1.9991 18 6 3.7802 -5.0241 0.8430 19 6 3.2107 -3.6311 1.0438 20 1 2.1838 -3.6287 0.6786 21 6 4.0147 -2.6335 0.2039 22 1 -0.4850 -0.8365 -0.0776 23 1 4.6224 -0.8983 2.1963 24 1 3.2043 0.1667 2.0410 25 1 2.9028 -1.6123 3.7927 26 1 1.6955 -1.7171 2.4872 27 1 3.7108 -5.9933 4.1349 28 1 5.1159 -5.4223 3.1965 29 1 2.3131 -5.9730 2.1053 30 1 3.7733 -6.9519 1.8074 31 1 3.3926 -5.4379 -0.0880 32 1 4.8666 -4.9611 0.7802 33 1 3.9388 -2.9011 -0.8500 34 1 5.0602 -2.6588 0.5113 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261086261.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:33 Heat of formation + Delta-G solvation = -53.344636 kcal Electronic energy + Delta-G solvation = -16309.665276 eV Core-core repulsion = 13820.405829 eV Total energy + Delta-G solvation = -2489.259447 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.22476 -37.11993 -35.26344 -32.83109 -31.45074 -30.36122 -27.79115 -24.98735 -23.01732 -22.82043 -21.59908 -19.02763 -18.33043 -16.94561 -16.09434 -15.77527 -14.93128 -14.23592 -14.00419 -13.88180 -13.49334 -13.33393 -12.84866 -12.51832 -12.36414 -11.86950 -11.45779 -11.35357 -10.94726 -10.85307 -10.55104 -10.38026 -10.31315 -9.94253 -9.65630 -9.57298 -9.07650 -8.86438 -8.29242 -7.80607 -6.46253 -4.07634 3.08704 3.36490 3.41041 3.58476 3.59549 4.47058 4.82298 4.87582 4.95636 5.05947 5.24905 5.52871 5.60147 5.80254 5.81811 5.88741 5.95248 6.01364 6.09527 6.22429 6.24473 6.26371 6.46640 6.61859 6.66812 6.84449 6.94141 7.07848 7.26035 7.34756 8.09680 8.16677 8.34502 8.66277 8.87347 9.59390 10.92567 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.039568 B = 0.009750 C = 0.009073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.467643 B = 2871.210736 C = 3085.232064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.031 3.969 3 Si 1.045 2.955 4 H -0.288 1.288 5 H -0.274 1.274 6 H -0.285 1.285 7 C -0.595 4.595 8 H 0.057 0.943 9 C 0.014 3.986 10 H 0.023 0.977 11 C -0.134 4.134 12 C 0.121 3.879 13 N -0.582 5.582 14 C 0.505 3.495 15 O -0.573 6.573 16 C -0.133 4.133 17 C -0.120 4.120 18 C -0.129 4.129 19 C 0.149 3.851 20 H 0.080 0.920 21 C -0.107 4.107 22 H 0.266 0.734 23 H 0.033 0.967 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.007 -8.981 1.279 12.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.174 4.174 3 Si 0.874 3.126 4 H -0.214 1.214 5 H -0.201 1.201 6 H -0.211 1.211 7 C -0.632 4.632 8 H 0.075 0.925 9 C -0.005 4.005 10 H 0.041 0.959 11 C -0.173 4.173 12 C 0.000 4.000 13 N -0.313 5.313 14 C 0.293 3.707 15 O -0.454 6.454 16 C -0.173 4.173 17 C -0.158 4.158 18 C -0.167 4.167 19 C 0.045 3.955 20 H 0.098 0.902 21 C -0.145 4.145 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.771 -7.103 1.884 10.695 hybrid contribution 0.178 -1.685 -0.275 1.717 sum 7.949 -8.788 1.609 11.959 Atomic orbital electron populations 1.70873 1.06983 1.30838 1.45271 1.25719 0.96112 1.02392 0.93191 0.84037 0.75384 0.76044 0.77140 1.21354 1.20111 1.21142 1.21910 0.94891 0.95940 1.50505 0.92484 1.19028 0.97781 0.92032 0.91681 0.95858 1.22281 0.97046 0.99191 0.98749 1.21724 0.99881 0.79328 0.99110 1.47730 1.63403 1.14176 1.05955 1.20314 0.77630 0.88206 0.84509 1.90639 1.56152 1.74612 1.23972 1.21728 1.02146 0.93625 0.99804 1.21547 1.01312 0.98937 0.94020 1.21642 1.01507 0.94572 0.98995 1.20615 1.01515 0.92563 0.80804 0.90177 1.21832 0.96887 0.97265 0.98547 0.92346 0.94785 0.91111 0.90630 0.90113 0.88886 0.88818 0.91275 0.90965 0.90329 0.91560 0.91736 0.94096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.75 13.69 55.43 0.76 -25.99 16 2 C 0.03 0.85 5.34 -17.82 -0.10 0.75 16 3 Si 1.04 24.48 26.40 -169.99 -4.49 19.99 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.27 -5.99 5.58 56.52 0.32 -5.67 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.59 -15.36 7.00 -34.44 -0.24 -15.60 16 8 H 0.06 1.57 6.68 -52.48 -0.35 1.22 16 9 C 0.01 0.31 2.18 -91.73 -0.20 0.11 16 10 H 0.02 0.53 6.79 -51.93 -0.35 0.18 16 11 C -0.13 -2.91 5.31 -26.66 -0.14 -3.06 16 12 C 0.12 2.62 5.98 -3.33 -0.02 2.60 16 13 N -0.58 -11.31 2.96 -166.61 -0.49 -11.81 16 14 C 0.51 9.45 7.46 -11.49 -0.09 9.36 16 15 O -0.57 -12.67 16.06 5.56 0.09 -12.58 16 16 C -0.13 -1.79 6.09 -27.91 -0.17 -1.96 16 17 C -0.12 -1.43 6.03 -26.68 -0.16 -1.59 16 18 C -0.13 -1.71 5.31 -27.43 -0.15 -1.85 16 19 C 0.15 2.63 2.70 -68.86 -0.19 2.44 16 20 H 0.08 1.61 6.48 -51.93 -0.34 1.27 16 21 C -0.11 -2.00 4.74 -26.61 -0.13 -2.13 16 22 H 0.27 7.86 8.73 -40.82 -0.36 7.50 16 23 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.07 1.60 4.84 -51.93 -0.25 1.34 16 25 H 0.08 1.65 6.68 -51.93 -0.35 1.30 16 26 H 0.08 1.94 7.34 -51.93 -0.38 1.56 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.81 7.88 -51.93 -0.41 0.40 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 LS Contribution 257.55 15.07 3.88 3.88 Total: -1.00 -30.03 257.55 -6.87 -36.90 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.05 Total: 0.52 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.57 Total: -10.92 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.27 Total: -37.79 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -4.49 Total: 19.99 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.03 -6.87 -36.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086261.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.443 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds