Wall clock time and date at job start Mon Mar 30 2020 02:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00171 * 2 1 4 4 H 1.48493 * 109.47037 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47046 * 120.00057 * 3 2 1 6 6 H 1.48499 * 109.47094 * 239.99980 * 3 2 1 7 7 C 1.37881 * 119.99942 * 179.72622 * 2 1 3 8 8 H 1.08005 * 119.99818 * 18.24584 * 7 2 1 9 9 C 1.50694 * 120.00126 * 198.25332 * 7 2 1 10 10 H 1.09005 * 109.49320 * 305.56368 * 9 7 2 11 11 C 1.53058 * 109.49985 * 65.62092 * 9 7 2 12 12 C 1.53076 * 109.27874 * 58.37042 * 11 9 7 13 13 N 1.47736 * 108.72198 * 55.41601 * 12 11 9 14 14 C 1.34086 * 117.82732 * 126.35159 * 13 12 11 15 15 O 1.21278 * 118.75955 * 358.51386 * 14 13 12 16 16 C 1.50305 * 122.50005 * 179.97438 * 14 13 12 17 17 C 1.53313 * 108.24618 * 333.00139 * 16 14 13 18 18 C 1.52783 * 108.19667 * 56.63476 * 17 16 14 19 19 C 1.45681 * 118.13446 * 306.16433 * 13 12 11 20 20 H 1.08999 * 108.09358 * 295.79405 * 19 13 12 21 21 C 1.53035 * 109.49345 * 185.48773 * 9 7 2 22 22 H 0.97001 * 119.99889 * 174.69748 * 1 2 3 23 23 H 1.09000 * 109.50735 * 178.31076 * 11 9 7 24 24 H 1.08997 * 109.50224 * 298.39249 * 11 9 7 25 25 H 1.08995 * 109.59411 * 175.18729 * 12 11 9 26 26 H 1.08997 * 109.59546 * 295.49451 * 12 11 9 27 27 H 1.09001 * 109.33359 * 213.62129 * 16 14 13 28 28 H 1.08998 * 110.17582 * 92.86837 * 16 14 13 29 29 H 1.09001 * 109.71608 * 296.95936 * 17 16 14 30 30 H 1.09001 * 109.71998 * 176.31415 * 17 16 14 31 31 H 1.09001 * 109.14669 * 176.37060 * 18 17 16 32 32 H 1.08998 * 109.15131 * 57.21245 * 18 17 16 33 33 H 1.09002 * 109.48740 * 60.64354 * 21 9 7 34 34 H 1.09007 * 109.48424 * 180.69318 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 0.0057 8 1 1.5052 -2.1073 -0.2828 9 6 3.4546 -1.2250 0.4146 10 1 4.0184 -0.5148 -0.1904 11 6 3.5768 -0.8468 1.8927 12 6 2.7517 -1.8237 2.7342 13 7 3.1970 -3.2003 2.4354 14 6 3.5606 -3.9780 3.4654 15 8 3.5346 -3.5131 4.5853 16 6 4.0296 -5.3941 3.2820 17 6 3.3976 -5.9468 1.9991 18 6 3.7802 -5.0241 0.8430 19 6 3.2107 -3.6311 1.0438 20 1 2.1838 -3.6287 0.6786 21 6 4.0147 -2.6335 0.2039 22 1 -0.4850 -0.8365 -0.0776 23 1 4.6224 -0.8983 2.1963 24 1 3.2043 0.1667 2.0410 25 1 2.9028 -1.6123 3.7927 26 1 1.6955 -1.7171 2.4872 27 1 3.7108 -5.9933 4.1349 28 1 5.1159 -5.4223 3.1965 29 1 2.3131 -5.9730 2.1053 30 1 3.7733 -6.9519 1.8074 31 1 3.3926 -5.4379 -0.0880 32 1 4.8666 -4.9611 0.7802 33 1 3.9388 -2.9011 -0.8500 34 1 5.0602 -2.6588 0.5113 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261086261.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:32 Heat of formation + Delta-G solvation = -72.926228 kcal Electronic energy + Delta-G solvation = -16310.514397 eV Core-core repulsion = 13820.405829 eV Total energy + Delta-G solvation = -2490.108568 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.69919 -38.73551 -36.64317 -34.64063 -33.22283 -31.82557 -29.21970 -26.79161 -24.58970 -24.29224 -23.01512 -20.83985 -19.76781 -18.76157 -17.63002 -17.16798 -16.36402 -15.97121 -15.56444 -15.47002 -14.97008 -14.83933 -14.31719 -14.09608 -13.83313 -13.56338 -13.02940 -12.71356 -12.35275 -12.32854 -12.06251 -11.93918 -11.70607 -11.66562 -11.46174 -11.24502 -10.86062 -10.53375 -10.30043 -9.49084 -8.64884 -6.25227 1.47701 1.53342 1.63701 1.72054 2.10757 2.52381 3.13769 3.60684 3.78249 3.88075 3.93374 4.24196 4.27356 4.33792 4.41169 4.52130 4.66294 4.74926 4.81312 4.87367 4.95770 5.04425 5.07051 5.08061 5.15323 5.22055 5.30487 5.38471 5.51626 5.68408 6.09897 6.16220 6.66047 6.69638 7.17898 7.49280 8.73060 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.039568 B = 0.009750 C = 0.009073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.467643 B = 2871.210736 C = 3085.232064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.022 4.022 3 Si 1.078 2.922 4 H -0.298 1.298 5 H -0.248 1.248 6 H -0.263 1.263 7 C -0.578 4.578 8 H 0.027 0.973 9 C 0.006 3.994 10 H 0.030 0.970 11 C -0.129 4.129 12 C 0.125 3.875 13 N -0.586 5.586 14 C 0.496 3.504 15 O -0.613 6.613 16 C -0.123 4.123 17 C -0.114 4.114 18 C -0.123 4.123 19 C 0.149 3.851 20 H 0.043 0.957 21 C -0.105 4.105 22 H 0.250 0.750 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.106 0.894 28 H 0.122 0.878 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.992 -10.585 1.045 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.220 4.220 3 Si 0.901 3.099 4 H -0.225 1.225 5 H -0.173 1.173 6 H -0.188 1.188 7 C -0.616 4.616 8 H 0.045 0.955 9 C -0.013 4.013 10 H 0.048 0.952 11 C -0.167 4.167 12 C 0.002 3.998 13 N -0.317 5.317 14 C 0.287 3.713 15 O -0.497 6.497 16 C -0.163 4.163 17 C -0.151 4.151 18 C -0.161 4.161 19 C 0.045 3.955 20 H 0.061 0.939 21 C -0.143 4.143 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.125 0.875 28 H 0.140 0.860 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.782 -8.749 1.633 13.981 hybrid contribution -0.796 -1.247 -0.189 1.491 sum 9.987 -9.996 1.444 14.203 Atomic orbital electron populations 1.71004 1.08348 1.29823 1.48947 1.26982 0.96022 1.06045 0.92917 0.83632 0.74887 0.72230 0.79108 1.22489 1.17346 1.18843 1.22075 0.96861 0.94350 1.48295 0.95498 1.19086 0.95348 0.94949 0.91946 0.95209 1.22187 0.98033 0.98382 0.98120 1.21411 0.97912 0.81639 0.98799 1.47825 1.63393 1.13270 1.07191 1.21418 0.76416 0.90068 0.83398 1.90619 1.57745 1.75852 1.25496 1.21802 1.03727 0.89445 1.01288 1.21563 1.00576 1.00570 0.92409 1.21636 1.02616 0.91424 1.00399 1.20696 0.99811 0.95533 0.79413 0.93899 1.21805 0.98078 0.94972 0.99435 0.94111 0.92638 0.92280 0.91224 0.93893 0.87523 0.86037 0.92659 0.86765 0.88642 0.89297 0.90864 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.29 13.69 21.45 0.29 -58.00 16 2 C -0.02 -1.23 5.34 84.66 0.45 -0.78 16 3 Si 1.08 49.20 26.40 68.60 1.81 51.01 16 4 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 5 H -0.25 -10.24 5.58 99.48 0.56 -9.68 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.58 -30.51 7.00 25.60 0.18 -30.33 16 8 H 0.03 1.55 6.68 -2.91 -0.02 1.53 16 9 C 0.01 0.25 2.18 -11.51 -0.03 0.23 16 10 H 0.03 1.27 6.79 -2.38 -0.02 1.26 16 11 C -0.13 -5.47 5.31 30.64 0.16 -5.31 16 12 C 0.13 5.54 5.98 86.17 0.52 6.05 16 13 N -0.59 -22.37 2.96 -799.80 -2.37 -24.74 16 14 C 0.50 17.76 7.46 87.64 0.65 18.42 16 15 O -0.61 -26.82 16.06 -3.02 -0.05 -26.87 16 16 C -0.12 -2.83 6.09 29.83 0.18 -2.65 16 17 C -0.11 -2.21 6.03 30.63 0.18 -2.02 16 18 C -0.12 -2.76 5.31 30.14 0.16 -2.60 16 19 C 0.15 5.05 2.70 44.83 0.12 5.17 16 20 H 0.04 1.76 6.48 -2.39 -0.02 1.75 16 21 C -0.10 -3.67 4.74 30.67 0.15 -3.52 16 22 H 0.25 15.68 8.73 -92.71 -0.81 14.87 16 23 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.06 2.61 4.84 -2.39 -0.01 2.60 16 25 H 0.07 3.12 6.68 -2.39 -0.02 3.11 16 26 H 0.04 2.18 7.34 -2.39 -0.02 2.17 16 27 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.09 1.67 7.88 -2.39 -0.02 1.65 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.07 2.02 8.09 -2.38 -0.02 2.00 16 Total: -1.00 -68.38 257.55 3.31 -65.07 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.89 Total: 10.88 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 2.73 Total: -17.36 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -2.08 Total: -82.74 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 1.81 Total: 51.01 kcal Total: -68.38 3.31 -65.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086261.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.852 kcal (2) G-P(sol) polarization free energy of solvation -68.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds