Wall clock time and date at job start Mon Mar 30 2020 02:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00150 * 2 1 4 4 H 1.48503 * 109.47160 * 269.99875 * 3 2 1 5 5 H 1.48501 * 109.47133 * 29.99837 * 3 2 1 6 6 H 1.48504 * 109.46978 * 150.00115 * 3 2 1 7 7 C 1.37878 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00344 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99715 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.51809 * 59.93610 * 9 7 2 11 11 C 1.53062 * 109.49273 * 299.86733 * 9 7 2 12 12 C 1.53066 * 109.29268 * 301.62013 * 11 9 7 13 13 N 1.47732 * 108.72327 * 304.59712 * 12 11 9 14 14 C 1.34088 * 117.84160 * 233.65627 * 13 12 11 15 15 O 1.21286 * 118.75342 * 1.55704 * 14 13 12 16 16 C 1.50317 * 122.49208 * 181.54195 * 14 13 12 17 17 C 1.53309 * 108.49197 * 25.74712 * 16 14 13 18 18 C 1.52794 * 108.18478 * 303.86652 * 17 16 14 19 19 C 1.45732 * 118.14107 * 53.83469 * 13 12 11 20 20 H 1.08997 * 108.07735 * 64.16565 * 19 13 12 21 21 C 1.53041 * 109.49374 * 180.02562 * 9 7 2 22 22 H 0.97004 * 120.00155 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.50303 * 61.56379 * 11 9 7 24 24 H 1.09004 * 109.50233 * 181.67264 * 11 9 7 25 25 H 1.08998 * 109.60002 * 64.36772 * 12 11 9 26 26 H 1.08999 * 109.59708 * 184.67494 * 12 11 9 27 27 H 1.09000 * 109.63588 * 145.44927 * 16 14 13 28 28 H 1.08999 * 109.63021 * 265.84467 * 16 14 13 29 29 H 1.08996 * 109.72229 * 63.53137 * 17 16 14 30 30 H 1.08998 * 109.72462 * 184.15034 * 17 16 14 31 31 H 1.09004 * 109.15193 * 183.64810 * 18 17 16 32 32 H 1.09002 * 109.15292 * 302.86172 * 18 17 16 33 33 H 1.09002 * 109.48905 * 179.29909 * 21 9 7 34 34 H 1.09002 * 109.48859 * 299.34070 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6229 -2.5570 -0.8894 11 6 0.3738 -2.5824 1.2510 12 6 1.2562 -2.4623 2.4959 13 7 2.3046 -3.5014 2.4362 14 6 2.4341 -4.3217 3.4890 15 8 1.6727 -4.1949 4.4245 16 6 3.4869 -5.3927 3.5535 17 6 4.6609 -4.9749 2.6605 18 6 4.1232 -4.7238 1.2525 19 6 3.1364 -3.5707 1.2415 20 1 3.7117 -2.6472 1.1759 21 6 2.2450 -3.6628 -0.0005 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3532 -1.7704 1.2406 24 1 -0.1486 -3.5390 1.2662 25 1 1.7200 -1.4762 2.5216 26 1 0.6487 -2.6039 3.3898 27 1 3.8311 -5.5065 4.5814 28 1 3.0715 -6.3363 3.1998 29 1 5.1126 -4.0624 3.0497 30 1 5.4047 -5.7712 2.6342 31 1 4.9552 -4.4885 0.5886 32 1 3.6239 -5.6241 0.8945 33 1 1.7000 -4.6066 0.0120 34 1 2.8641 -3.6122 -0.8963 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261086263.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:35 Heat of formation + Delta-G solvation = -71.765626 kcal Electronic energy + Delta-G solvation = -16289.525457 eV Core-core repulsion = 13799.467216 eV Total energy + Delta-G solvation = -2490.058241 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.59323 -38.61824 -36.55798 -34.50959 -32.99053 -31.49169 -29.14052 -27.06151 -24.66897 -24.17053 -22.94925 -20.83819 -19.50956 -17.94678 -17.48581 -17.03589 -16.59097 -16.19717 -15.35989 -15.05665 -14.85146 -14.69325 -14.29267 -14.10112 -13.57056 -13.33328 -12.88256 -12.77874 -12.50487 -12.42363 -12.20429 -11.88939 -11.82554 -11.57161 -11.29400 -11.10817 -10.85650 -10.50522 -10.37339 -9.38624 -8.06636 -6.17418 1.40734 1.43589 1.50947 1.71029 2.20461 2.44064 3.22609 3.68613 3.85659 3.98562 4.00700 4.38865 4.42281 4.51579 4.56677 4.63420 4.77663 4.84093 4.89311 4.94736 5.11018 5.13074 5.18356 5.22196 5.30808 5.42768 5.47006 5.56027 5.68851 5.83303 6.09503 6.36725 6.76896 6.92465 7.26241 7.49611 8.98818 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035190 B = 0.009636 C = 0.009112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.487946 B = 2905.015905 C = 3072.294642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.943 3.057 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.510 4.510 8 H 0.061 0.939 9 C 0.037 3.963 10 H -0.003 1.003 11 C -0.112 4.112 12 C 0.131 3.869 13 N -0.586 5.586 14 C 0.494 3.506 15 O -0.618 6.618 16 C -0.124 4.124 17 C -0.111 4.111 18 C -0.124 4.124 19 C 0.148 3.852 20 H 0.060 0.940 21 C -0.110 4.110 22 H 0.258 0.742 23 H 0.070 0.930 24 H 0.021 0.979 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.270 -9.741 1.880 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.770 3.230 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.192 1.192 7 C -0.548 4.548 8 H 0.079 0.921 9 C 0.019 3.981 10 H 0.016 0.984 11 C -0.151 4.151 12 C 0.008 3.992 13 N -0.317 5.317 14 C 0.285 3.715 15 O -0.502 6.502 16 C -0.164 4.164 17 C -0.149 4.149 18 C -0.162 4.162 19 C 0.045 3.955 20 H 0.078 0.922 21 C -0.148 4.148 22 H 0.067 0.933 23 H 0.088 0.912 24 H 0.040 0.960 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.080 0.920 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.778 -9.554 2.312 13.865 hybrid contribution -0.412 1.484 -0.132 1.546 sum 9.367 -8.070 2.181 12.554 Atomic orbital electron populations 1.69998 1.07187 1.26870 1.51822 1.25656 0.95443 1.02031 0.95328 0.85776 0.78897 0.80253 0.78070 1.20259 1.21775 1.19174 1.21397 0.92969 0.91084 1.49318 0.92109 1.18692 0.93296 0.93531 0.92616 0.98438 1.21678 0.98717 0.98682 0.96005 1.21406 0.89626 0.90143 0.97979 1.47915 1.34522 1.31994 1.17235 1.21436 0.85860 0.83124 0.81096 1.90617 1.47615 1.73531 1.38423 1.21793 0.94107 0.96603 1.03875 1.21551 0.96806 1.03091 0.93441 1.21638 0.98396 0.97299 0.98835 1.20733 0.91113 1.00321 0.83314 0.92215 1.21889 0.98025 0.97663 0.97191 0.93268 0.91202 0.96015 0.92868 0.92264 0.87491 0.86715 0.91955 0.86881 0.87947 0.90138 0.93189 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.20 11.35 21.45 0.24 -51.96 16 2 C 0.01 0.74 5.30 84.66 0.45 1.18 16 3 Si 0.94 42.61 29.54 68.60 2.03 44.63 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.51 -26.07 6.64 25.60 0.17 -25.90 16 8 H 0.06 3.00 6.62 -2.91 -0.02 2.98 16 9 C 0.04 1.78 2.59 -11.51 -0.03 1.75 16 10 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 11 C -0.11 -5.46 5.38 30.64 0.16 -5.29 16 12 C 0.13 6.05 5.98 86.17 0.52 6.57 16 13 N -0.59 -22.81 2.96 -799.85 -2.37 -25.18 16 14 C 0.49 18.17 7.47 87.64 0.65 18.82 16 15 O -0.62 -27.94 16.06 -3.05 -0.05 -27.99 16 16 C -0.12 -2.93 6.07 29.83 0.18 -2.75 16 17 C -0.11 -2.09 6.04 30.63 0.19 -1.90 16 18 C -0.12 -2.72 5.32 30.12 0.16 -2.56 16 19 C 0.15 4.95 2.66 44.79 0.12 5.07 16 20 H 0.06 2.21 6.57 -2.39 -0.02 2.19 16 21 C -0.11 -4.06 4.77 30.66 0.15 -3.91 16 22 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 23 H 0.07 3.83 6.13 -2.39 -0.01 3.81 16 24 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.05 2.64 7.33 -2.39 -0.02 2.62 16 26 H 0.06 2.84 6.69 -2.39 -0.02 2.82 16 27 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.08 1.59 7.93 -2.39 -0.02 1.57 16 33 H 0.05 1.74 8.12 -2.39 -0.02 1.72 16 34 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -64.76 262.31 3.64 -61.12 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.07 Total: 8.28 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 2.72 Total: -8.92 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -2.13 Total: -77.13 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.05 Total: -27.99 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -64.76 3.64 -61.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086263.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.645 kcal (2) G-P(sol) polarization free energy of solvation -64.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds