Wall clock time and date at job start Mon Mar 30 2020 03:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00099 * 2 1 4 4 H 1.48504 * 109.47268 * 240.00126 * 3 2 1 5 5 H 1.48502 * 109.47253 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47163 * 120.00162 * 3 2 1 7 7 C 1.37880 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00415 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99463 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.45751 * 117.94725 * 89.99540 * 10 9 7 12 12 C 1.52918 * 110.48903 * 199.07583 * 11 10 9 13 13 C 1.53352 * 108.67303 * 309.24979 * 12 11 10 14 14 H 1.08998 * 109.67337 * 307.76035 * 13 12 11 15 15 C 1.53006 * 109.67026 * 187.26401 * 13 12 11 16 16 C 1.53000 * 117.49776 * 60.00162 * 15 13 12 17 17 C 1.52997 * 117.49537 * 128.62616 * 15 13 12 18 18 C 1.53066 * 108.42361 * 67.53359 * 13 12 11 19 19 C 1.33352 * 117.94529 * 269.98010 * 10 9 7 20 20 O 1.21287 * 118.24902 * 357.79804 * 19 10 9 21 21 H 0.97009 * 119.99907 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47067 * 60.00042 * 9 7 2 23 23 H 1.08997 * 109.47308 * 300.00083 * 9 7 2 24 24 H 1.09006 * 109.29560 * 78.76538 * 11 10 9 25 25 H 1.08993 * 109.13649 * 319.28715 * 11 10 9 26 26 H 1.09000 * 109.60246 * 189.49851 * 12 11 10 27 27 H 1.08996 * 109.60350 * 69.00315 * 12 11 10 28 28 H 1.09002 * 115.56020 * 274.30745 * 15 13 12 29 29 H 1.08990 * 117.49990 * 359.97438 * 16 15 13 30 30 H 1.09004 * 117.49237 * 214.97568 * 16 15 13 31 31 H 1.08999 * 117.49685 * 145.02116 * 17 15 13 32 32 H 1.08997 * 117.50044 * 359.97438 * 17 15 13 33 33 H 1.08997 * 109.40647 * 71.22289 * 18 13 12 34 34 H 1.09003 * 109.39716 * 190.97325 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 2.6469 -4.1330 1.2844 12 6 3.9429 -4.9283 1.1220 13 6 3.7540 -5.9497 -0.0062 14 1 2.8533 -6.5357 0.1763 15 6 4.9686 -6.8781 -0.0691 16 6 5.2877 -7.7092 1.1752 17 6 4.7063 -8.3854 -0.0681 18 6 3.6168 -5.1904 -1.3282 19 6 2.6087 -4.0869 -1.1811 20 8 2.1392 -3.6005 -2.1881 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5562 -0.8920 23 1 0.6240 -2.5574 0.8880 24 1 1.8745 -4.7828 1.6960 25 1 2.8183 -3.3003 1.9665 26 1 4.1714 -5.4489 2.0520 27 1 4.7584 -4.2509 0.8692 28 1 5.8089 -6.5138 -0.6602 29 1 4.6326 -7.5943 2.0387 30 1 6.3380 -7.8917 1.4027 31 1 5.3742 -9.0128 -0.6585 32 1 3.6686 -8.7157 -0.0223 33 1 4.5819 -4.7652 -1.6035 34 1 3.2895 -5.8779 -2.1082 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261088457.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:41 Heat of formation + Delta-G solvation = -24.111910 kcal Electronic energy + Delta-G solvation = -15452.978118 eV Core-core repulsion = 12964.986297 eV Total energy + Delta-G solvation = -2487.991821 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.80554 -37.70136 -35.26846 -33.47549 -31.97075 -29.21445 -27.21584 -24.55061 -23.18025 -22.37104 -21.88465 -20.03612 -17.99473 -16.51643 -16.04341 -15.73555 -15.03584 -14.83870 -14.32184 -14.03229 -13.76561 -13.25904 -12.59421 -12.22382 -12.05463 -11.66314 -11.48715 -11.21070 -11.06486 -10.94826 -10.82624 -10.68156 -10.46338 -10.33929 -10.09351 -9.84397 -9.56550 -8.69796 -8.38376 -7.59484 -6.00165 -4.04477 3.34047 3.38402 3.41042 3.56735 3.68991 4.07927 4.47849 4.51150 4.79296 4.80699 4.98717 5.20434 5.25184 5.32262 5.37555 5.48813 5.53760 5.74326 5.76427 5.85176 5.99750 6.02398 6.09848 6.14818 6.16882 6.28409 6.48510 7.13423 7.54694 7.56597 7.96293 8.28719 8.59291 8.95838 9.20126 9.60075 11.08189 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.048093 B = 0.006510 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.064311 B = 4300.165615 C = 4443.455961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.237 3.763 10 N -0.590 5.590 11 C 0.117 3.883 12 C -0.127 4.127 13 C -0.059 4.059 14 H 0.076 0.924 15 C -0.144 4.144 16 C -0.180 4.180 17 C -0.182 4.182 18 C -0.125 4.125 19 C 0.504 3.496 20 O -0.557 6.557 21 H 0.263 0.737 22 H 0.047 0.953 23 H 0.030 0.970 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.324 -14.209 4.028 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.074 0.926 9 C 0.118 3.882 10 N -0.322 5.322 11 C -0.007 4.007 12 C -0.165 4.165 13 C -0.078 4.078 14 H 0.094 0.906 15 C -0.162 4.162 16 C -0.217 4.217 17 C -0.219 4.219 18 C -0.165 4.165 19 C 0.291 3.709 20 O -0.436 6.436 21 H 0.073 0.927 22 H 0.065 0.935 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.912 -13.837 3.521 16.832 hybrid contribution 0.553 0.937 0.095 1.092 sum 9.466 -12.900 3.616 16.404 Atomic orbital electron populations 1.69929 1.05991 1.27027 1.50495 1.24931 0.94874 0.99164 0.95137 0.86565 0.79517 0.82782 0.78574 1.20215 1.21171 1.20287 1.21368 0.93214 0.90715 1.50999 0.92623 1.19327 0.87940 0.82452 0.98518 1.47560 1.45286 1.35111 1.04232 1.21245 0.94817 0.97830 0.86802 1.21923 0.98242 0.97622 0.98692 1.20857 0.96571 0.95329 0.95017 0.90582 1.22359 1.00011 0.92080 1.01716 1.22930 1.01547 1.04762 0.92451 1.23013 1.02035 0.95162 1.01655 1.21681 0.99878 0.96753 0.98208 1.19796 0.83249 0.84063 0.83767 1.90690 1.56787 1.60305 1.35836 0.92715 0.93460 0.95186 0.92898 0.90359 0.90476 0.91029 0.87744 0.88679 0.89050 0.89091 0.88822 0.89085 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.22 9.37 -34.44 -0.32 -15.54 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.24 6.41 4.97 -5.19 -0.03 6.38 16 10 N -0.59 -12.95 2.80 -176.33 -0.49 -13.44 16 11 C 0.12 1.95 6.33 -4.49 -0.03 1.92 16 12 C -0.13 -1.65 5.25 -26.59 -0.14 -1.79 16 13 C -0.06 -0.74 2.41 -90.40 -0.22 -0.96 16 14 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 15 C -0.14 -1.46 5.16 -90.62 -0.47 -1.92 16 16 C -0.18 -1.57 9.66 -26.73 -0.26 -1.83 16 17 C -0.18 -1.63 10.18 -26.73 -0.27 -1.90 16 18 C -0.13 -1.94 5.35 -28.10 -0.15 -2.09 16 19 C 0.50 11.02 7.46 -11.87 -0.09 10.93 16 20 O -0.56 -14.97 16.18 5.55 0.09 -14.88 16 21 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.05 1.45 7.13 -51.93 -0.37 1.08 16 23 H 0.03 0.81 8.02 -51.93 -0.42 0.40 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 26 H 0.08 0.81 7.11 -51.93 -0.37 0.44 16 27 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 28 H 0.10 1.03 8.04 -51.93 -0.42 0.62 16 29 H 0.09 0.81 7.60 -51.93 -0.39 0.41 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 33 H 0.09 1.33 8.03 -51.93 -0.42 0.91 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 281.50 15.07 4.24 4.24 Total: -1.00 -33.30 281.50 -7.81 -41.11 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -5.29 Total: -2.68 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.07 Total: -5.12 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.24 Total: -39.84 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.09 Total: -14.88 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.30 -7.81 -41.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261088457.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.994 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds