Wall clock time and date at job start Mon Mar 30 2020 03:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00099 * 2 1 4 4 H 1.48504 * 109.47268 * 240.00126 * 3 2 1 5 5 H 1.48502 * 109.47253 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47163 * 120.00162 * 3 2 1 7 7 C 1.37880 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00415 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99463 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.45751 * 117.94725 * 89.99540 * 10 9 7 12 12 C 1.52918 * 110.48903 * 199.07583 * 11 10 9 13 13 C 1.53352 * 108.67303 * 309.24979 * 12 11 10 14 14 H 1.08998 * 109.67337 * 307.76035 * 13 12 11 15 15 C 1.53006 * 109.67026 * 187.26401 * 13 12 11 16 16 C 1.53000 * 117.49776 * 60.00162 * 15 13 12 17 17 C 1.52997 * 117.49537 * 128.62616 * 15 13 12 18 18 C 1.53066 * 108.42361 * 67.53359 * 13 12 11 19 19 C 1.33352 * 117.94529 * 269.98010 * 10 9 7 20 20 O 1.21287 * 118.24902 * 357.79804 * 19 10 9 21 21 H 0.97009 * 119.99907 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47067 * 60.00042 * 9 7 2 23 23 H 1.08997 * 109.47308 * 300.00083 * 9 7 2 24 24 H 1.09006 * 109.29560 * 78.76538 * 11 10 9 25 25 H 1.08993 * 109.13649 * 319.28715 * 11 10 9 26 26 H 1.09000 * 109.60246 * 189.49851 * 12 11 10 27 27 H 1.08996 * 109.60350 * 69.00315 * 12 11 10 28 28 H 1.09002 * 115.56020 * 274.30745 * 15 13 12 29 29 H 1.08990 * 117.49990 * 359.97438 * 16 15 13 30 30 H 1.09004 * 117.49237 * 214.97568 * 16 15 13 31 31 H 1.08999 * 117.49685 * 145.02116 * 17 15 13 32 32 H 1.08997 * 117.50044 * 359.97438 * 17 15 13 33 33 H 1.08997 * 109.40647 * 71.22289 * 18 13 12 34 34 H 1.09003 * 109.39716 * 190.97325 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 2.6469 -4.1330 1.2844 12 6 3.9429 -4.9283 1.1220 13 6 3.7540 -5.9497 -0.0062 14 1 2.8533 -6.5357 0.1763 15 6 4.9686 -6.8781 -0.0691 16 6 5.2877 -7.7092 1.1752 17 6 4.7063 -8.3854 -0.0681 18 6 3.6168 -5.1904 -1.3282 19 6 2.6087 -4.0869 -1.1811 20 8 2.1392 -3.6005 -2.1881 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5562 -0.8920 23 1 0.6240 -2.5574 0.8880 24 1 1.8745 -4.7828 1.6960 25 1 2.8183 -3.3003 1.9665 26 1 4.1714 -5.4489 2.0520 27 1 4.7584 -4.2509 0.8692 28 1 5.8089 -6.5138 -0.6602 29 1 4.6326 -7.5943 2.0387 30 1 6.3380 -7.8917 1.4027 31 1 5.3742 -9.0128 -0.6585 32 1 3.6686 -8.7157 -0.0223 33 1 4.5819 -4.7652 -1.6035 34 1 3.2895 -5.8779 -2.1082 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261088457.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:41 Heat of formation + Delta-G solvation = -45.162302 kcal Electronic energy + Delta-G solvation = -15453.890931 eV Core-core repulsion = 12964.986297 eV Total energy + Delta-G solvation = -2488.904634 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.34070 -38.78757 -36.90272 -35.25943 -33.71374 -30.62810 -29.22950 -26.03719 -24.73859 -23.66915 -22.86486 -20.97752 -19.49241 -18.72920 -17.48734 -17.32221 -16.54893 -16.19575 -15.99254 -15.27389 -15.08615 -14.54731 -14.30181 -13.97001 -13.53467 -13.25171 -12.88357 -12.68890 -12.55908 -12.33159 -12.23500 -12.16953 -11.92750 -11.81053 -11.58931 -11.16418 -10.67385 -10.65205 -10.39875 -9.46567 -8.23588 -6.38595 1.35422 1.40337 1.47741 1.84585 2.32072 2.46793 2.99016 3.06016 3.56537 3.76525 3.91878 3.94615 4.19505 4.31080 4.36162 4.46726 4.61494 4.71222 4.78942 4.91013 4.93960 4.97923 5.02698 5.09622 5.17572 5.23329 5.31398 5.39774 5.49475 5.53806 5.79747 6.04717 6.68633 6.86555 7.27387 7.49087 8.84085 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.048093 B = 0.006510 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.064311 B = 4300.165615 C = 4443.455961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.543 4.543 8 H 0.052 0.948 9 C 0.250 3.750 10 N -0.593 5.593 11 C 0.108 3.892 12 C -0.116 4.116 13 C -0.049 4.049 14 H 0.078 0.922 15 C -0.152 4.152 16 C -0.170 4.170 17 C -0.180 4.180 18 C -0.112 4.112 19 C 0.492 3.508 20 O -0.620 6.620 21 H 0.268 0.732 22 H -0.001 1.001 23 H 0.022 0.978 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.113 0.887 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.577 -15.248 5.305 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.794 3.206 4 H -0.203 1.203 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.582 4.582 8 H 0.070 0.930 9 C 0.128 3.872 10 N -0.323 5.323 11 C -0.014 4.014 12 C -0.154 4.154 13 C -0.068 4.068 14 H 0.097 0.903 15 C -0.171 4.171 16 C -0.207 4.207 17 C -0.217 4.217 18 C -0.151 4.151 19 C 0.282 3.718 20 O -0.504 6.504 21 H 0.076 0.924 22 H 0.017 0.983 23 H 0.040 0.960 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.131 0.869 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.192 -14.918 4.847 19.269 hybrid contribution -0.210 1.220 -0.296 1.273 sum 10.982 -13.698 4.550 18.136 Atomic orbital electron populations 1.70056 1.07658 1.28273 1.50901 1.25901 0.95842 1.03184 0.94321 0.85431 0.78289 0.77835 0.79018 1.20348 1.20170 1.18291 1.21623 0.93147 0.91915 1.51480 0.92952 1.18818 0.88483 0.84222 0.95687 1.47619 1.44273 1.33813 1.06605 1.21582 0.97560 0.98280 0.83995 1.21905 0.95499 0.97284 1.00666 1.20768 0.98155 0.95220 0.92648 0.90347 1.22196 0.99006 0.92253 1.03602 1.23030 1.02468 1.03097 0.92065 1.23096 1.02405 0.94227 1.01984 1.21644 0.97949 0.94808 1.00724 1.21006 0.83438 0.84795 0.82592 1.90650 1.59195 1.62690 1.37868 0.92354 0.98287 0.95999 0.91015 0.91274 0.86901 0.91469 0.87246 0.88146 0.87782 0.88040 0.88889 0.87710 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 2 C 0.01 0.38 5.46 84.66 0.46 0.84 16 3 Si 0.97 45.77 29.54 68.60 2.03 47.79 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.54 -32.43 9.37 25.60 0.24 -32.19 16 8 H 0.05 3.08 7.81 -2.92 -0.02 3.06 16 9 C 0.25 14.15 4.97 85.63 0.43 14.58 16 10 N -0.59 -26.62 2.80 -830.98 -2.32 -28.94 16 11 C 0.11 3.50 6.33 86.49 0.55 4.04 16 12 C -0.12 -2.69 5.25 30.68 0.16 -2.52 16 13 C -0.05 -1.10 2.41 -10.65 -0.03 -1.12 16 14 H 0.08 1.74 7.89 -2.39 -0.02 1.72 16 15 C -0.15 -2.54 5.16 -10.79 -0.06 -2.60 16 16 C -0.17 -2.25 9.66 30.60 0.30 -1.96 16 17 C -0.18 -2.58 10.18 30.60 0.31 -2.27 16 18 C -0.11 -3.33 5.35 29.71 0.16 -3.17 16 19 C 0.49 21.98 7.46 87.72 0.65 22.63 16 20 O -0.62 -35.00 16.18 -3.05 -0.05 -35.05 16 21 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 22 H 0.00 -0.07 7.13 -2.39 -0.02 -0.08 16 23 H 0.02 1.25 8.02 -2.39 -0.02 1.23 16 24 H 0.07 2.05 8.14 -2.38 -0.02 2.04 16 25 H 0.07 2.36 8.10 -2.39 -0.02 2.34 16 26 H 0.11 1.87 7.11 -2.39 -0.02 1.85 16 27 H 0.07 1.65 8.12 -2.39 -0.02 1.63 16 28 H 0.11 1.76 8.04 -2.39 -0.02 1.74 16 29 H 0.10 1.25 7.60 -2.39 -0.02 1.23 16 30 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.36 8.05 -2.39 -0.02 1.34 16 33 H 0.10 2.87 8.03 -2.39 -0.02 2.85 16 34 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -75.50 281.50 4.18 -71.33 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 1.06 Total: 6.02 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 3.17 Total: -3.74 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -2.04 Total: -86.36 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.05 Total: -35.05 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -75.50 4.18 -71.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261088457.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.164 kcal (2) G-P(sol) polarization free energy of solvation -75.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds