Wall clock time and date at job start Mon Mar 30 2020 03:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 5 5 C 1.34514 * 126.57522 * 300.02224 * 4 2 1 6 6 O 1.34302 * 108.41899 * 180.02562 * 5 4 2 7 7 C 1.34302 * 109.47603 * 0.02562 * 6 5 4 8 8 C 1.50706 * 125.78802 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.46638 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47187 * 299.97506 * 8 7 6 11 11 H 1.07997 * 119.99776 * 359.97438 * 10 8 7 12 12 C 1.37875 * 119.99722 * 180.02562 * 10 8 7 13 13 N 1.31514 * 120.00187 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99811 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46938 * 59.99917 * 14 12 10 16 16 H 1.48495 * 109.47052 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47247 * 300.00419 * 14 12 10 18 18 C 1.53000 * 109.46918 * 59.97695 * 8 7 6 19 19 N 1.46900 * 109.47292 * 65.00084 * 18 8 7 20 20 C 1.34517 * 108.42053 * 359.71898 * 7 6 5 21 21 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 27 27 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 28 28 H 1.08004 * 125.79043 * 359.97079 * 5 4 2 29 29 H 0.96997 * 119.99785 * 180.02562 * 13 12 10 30 30 H 1.09004 * 109.46608 * 184.99779 * 18 8 7 31 31 H 1.08993 * 109.47380 * 304.99400 * 18 8 7 32 32 H 1.00902 * 110.99956 * 179.97438 * 19 18 8 33 33 H 1.00904 * 110.99632 * 303.95237 * 19 18 8 34 34 H 1.08004 * 126.57602 * 180.25968 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.7899 -0.3684 2.5086 6 8 2.4132 -1.2486 3.3090 7 6 3.0576 -2.1575 2.5590 8 6 3.8744 -3.3114 3.0810 9 1 4.2773 -3.8799 2.2427 10 6 5.0084 -2.7844 3.9220 11 1 5.1262 -1.7203 4.0638 12 6 5.8961 -3.6607 4.5093 13 7 5.7535 -4.9565 4.3352 14 14 7.3023 -3.0075 5.5511 15 1 6.7538 -2.2331 6.6933 16 1 8.1077 -4.1445 6.0645 17 1 8.1635 -2.1253 4.7232 18 6 2.9866 -4.2201 3.9337 19 7 1.9516 -4.8281 3.0868 20 6 2.8448 -1.8670 1.2629 21 1 -0.3633 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.1957 0.4720 2.8358 29 1 6.3779 -5.5730 4.7487 30 1 3.5953 -5.0046 4.3833 31 1 2.5134 -3.6319 4.7199 32 1 1.3520 -5.4336 3.6271 33 1 1.4147 -4.1207 2.6079 34 1 3.2242 -2.4113 0.4107 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261105636.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:35 Heat of formation + Delta-G solvation = -10.201841 kcal Electronic energy + Delta-G solvation = -15403.727970 eV Core-core repulsion = 12916.339335 eV Total energy + Delta-G solvation = -2487.388635 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.79941 -35.89134 -35.16175 -32.23664 -31.24525 -29.62723 -27.02340 -26.77380 -23.90365 -22.65435 -21.18940 -20.26344 -17.90067 -16.67381 -16.22312 -15.18469 -14.82476 -14.47812 -14.34125 -13.83038 -13.59589 -13.08210 -13.02866 -12.14672 -12.09869 -12.06059 -11.92107 -11.16587 -11.09451 -11.02630 -10.79326 -10.64922 -10.54334 -10.29397 -9.66778 -9.40133 -8.83991 -8.53546 -7.68904 -7.44489 -6.09196 -4.18177 2.59571 3.29328 3.33295 3.34720 3.42318 3.94462 4.37837 5.02981 5.07969 5.18163 5.36925 5.57912 5.68905 5.71115 5.73557 5.78788 5.90432 6.07640 6.09014 6.35334 6.37964 6.55107 6.67570 6.72861 6.82901 7.04847 7.29568 7.47029 7.63345 7.83445 8.09757 8.10751 8.32758 8.37894 8.84249 9.46853 10.95362 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.034668 B = 0.007598 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.470420 B = 3684.413465 C = 4185.634392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.025 4.025 3 C -0.142 4.142 4 C -0.168 4.168 5 C -0.081 4.081 6 O -0.172 6.172 7 C 0.061 3.939 8 C 0.119 3.881 9 H 0.067 0.933 10 C -0.518 4.518 11 H 0.060 0.940 12 C 0.065 3.935 13 N -0.885 5.885 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.276 1.276 18 C 0.064 3.936 19 N -0.852 5.852 20 C -0.248 4.248 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.184 0.816 29 H 0.265 0.735 30 H 0.112 0.888 31 H 0.002 0.998 32 H 0.322 0.678 33 H 0.322 0.678 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.392 7.412 -5.273 12.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.043 4.043 3 C -0.199 4.199 4 C -0.169 4.169 5 C -0.148 4.148 6 O -0.068 6.068 7 C 0.010 3.990 8 C 0.100 3.900 9 H 0.084 0.916 10 C -0.556 4.556 11 H 0.078 0.922 12 C -0.138 4.138 13 N -0.522 5.522 14 Si 0.726 3.274 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.066 4.066 19 N -0.379 5.379 20 C -0.267 4.267 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.201 0.799 29 H 0.075 0.925 30 H 0.130 0.870 31 H 0.020 0.980 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.681 6.906 -5.291 11.605 hybrid contribution 0.068 0.950 0.988 1.372 sum -7.613 7.855 -4.304 11.755 Atomic orbital electron populations 1.21833 0.95067 1.01792 1.01128 1.19454 0.94881 0.94966 0.95009 1.21840 1.01422 0.95528 1.01110 1.20212 1.03490 0.98756 0.94470 1.23396 1.04500 0.97796 0.89109 1.84070 1.51976 1.33154 1.37564 1.23688 0.94183 0.92035 0.89111 1.17707 0.90162 0.85392 0.96698 0.91569 1.20971 1.10100 0.93409 1.31146 0.92222 1.24966 0.97701 0.94831 0.96260 1.69862 1.37116 1.01294 1.43968 0.86544 0.81898 0.78414 0.80560 1.20153 1.21080 1.20099 1.22107 0.91903 0.99061 0.93480 1.58972 1.18817 1.25088 1.35071 1.21336 1.07498 1.00763 0.97063 0.92910 0.92955 0.92577 0.90852 0.92520 0.92950 0.92894 0.79928 0.92529 0.87041 0.97994 0.86746 0.86709 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.08 37.16 0.34 -1.29 16 2 C -0.02 -0.33 3.30 -91.77 -0.30 -0.64 16 3 C -0.14 -1.70 9.08 37.16 0.34 -1.36 16 4 C -0.17 -2.92 4.89 -104.74 -0.51 -3.43 16 5 C -0.08 -1.43 11.46 29.42 0.34 -1.09 16 6 O -0.17 -3.77 10.65 5.72 0.06 -3.70 16 7 C 0.06 1.39 4.80 -35.62 -0.17 1.22 16 8 C 0.12 3.04 2.39 -92.92 -0.22 2.81 16 9 H 0.07 1.83 8.10 -51.93 -0.42 1.41 16 10 C -0.52 -14.34 8.55 -34.44 -0.29 -14.63 16 11 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 12 C 0.06 1.77 5.29 -17.82 -0.09 1.68 16 13 N -0.88 -24.77 11.30 55.43 0.63 -24.14 16 14 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.06 1.55 6.07 -3.82 -0.02 1.53 16 19 N -0.85 -17.56 9.62 -10.37 -0.10 -17.66 16 20 C -0.25 -5.04 10.73 -39.70 -0.43 -5.47 16 21 H 0.05 0.58 8.02 -51.93 -0.42 0.16 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.60 8.02 -51.93 -0.42 0.19 16 28 H 0.18 2.54 8.06 -52.48 -0.42 2.12 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.11 2.98 5.96 -51.93 -0.31 2.67 16 31 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.32 5.79 9.08 -39.29 -0.36 5.43 16 33 H 0.32 6.35 8.07 -39.29 -0.32 6.03 16 34 H 0.14 2.66 8.06 -52.48 -0.42 2.24 16 LS Contribution 286.31 15.07 4.31 4.31 Total: -1.00 -28.57 286.31 -6.31 -34.88 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -5.16 Total: 10.83 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -1.03 Total: -20.67 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.53 Total: -41.80 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: 0.06 Total: -3.70 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.57 -6.31 -34.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105636.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.681 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds