Wall clock time and date at job start Mon Mar 30 2020 03:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 5 5 C 1.34514 * 126.57522 * 300.02224 * 4 2 1 6 6 O 1.34302 * 108.41899 * 180.02562 * 5 4 2 7 7 C 1.34302 * 109.47603 * 0.02562 * 6 5 4 8 8 C 1.50706 * 125.78802 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.46638 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47187 * 299.97506 * 8 7 6 11 11 H 1.07997 * 119.99776 * 359.97438 * 10 8 7 12 12 C 1.37875 * 119.99722 * 180.02562 * 10 8 7 13 13 N 1.31514 * 120.00187 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99811 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46938 * 59.99917 * 14 12 10 16 16 H 1.48495 * 109.47052 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47247 * 300.00419 * 14 12 10 18 18 C 1.53000 * 109.46918 * 59.97695 * 8 7 6 19 19 N 1.46900 * 109.47292 * 65.00084 * 18 8 7 20 20 C 1.34517 * 108.42053 * 359.71898 * 7 6 5 21 21 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 27 27 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 28 28 H 1.08004 * 125.79043 * 359.97079 * 5 4 2 29 29 H 0.96997 * 119.99785 * 180.02562 * 13 12 10 30 30 H 1.09004 * 109.46608 * 184.99779 * 18 8 7 31 31 H 1.08993 * 109.47380 * 304.99400 * 18 8 7 32 32 H 1.00902 * 110.99956 * 179.97438 * 19 18 8 33 33 H 1.00904 * 110.99632 * 303.95237 * 19 18 8 34 34 H 1.08004 * 126.57602 * 180.25968 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.7899 -0.3684 2.5086 6 8 2.4132 -1.2486 3.3090 7 6 3.0576 -2.1575 2.5590 8 6 3.8744 -3.3114 3.0810 9 1 4.2773 -3.8799 2.2427 10 6 5.0084 -2.7844 3.9220 11 1 5.1262 -1.7203 4.0638 12 6 5.8961 -3.6607 4.5093 13 7 5.7535 -4.9565 4.3352 14 14 7.3023 -3.0075 5.5511 15 1 6.7538 -2.2331 6.6933 16 1 8.1077 -4.1445 6.0645 17 1 8.1635 -2.1253 4.7232 18 6 2.9866 -4.2201 3.9337 19 7 1.9516 -4.8281 3.0868 20 6 2.8448 -1.8670 1.2629 21 1 -0.3633 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.1957 0.4720 2.8358 29 1 6.3779 -5.5730 4.7487 30 1 3.5953 -5.0046 4.3833 31 1 2.5134 -3.6319 4.7199 32 1 1.3520 -5.4336 3.6271 33 1 1.4147 -4.1207 2.6079 34 1 3.2242 -2.4113 0.4107 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261105636.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:35 Heat of formation + Delta-G solvation = -28.342292 kcal Electronic energy + Delta-G solvation = -15404.514599 eV Core-core repulsion = 12916.339335 eV Total energy + Delta-G solvation = -2488.175264 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.37018 -37.30184 -36.82254 -34.24465 -32.78370 -31.32225 -28.49504 -27.91481 -25.91740 -23.93499 -22.90138 -21.88336 -19.43277 -18.47740 -17.89175 -16.99046 -16.61487 -16.14404 -15.68241 -15.36552 -15.13700 -14.60568 -14.00829 -13.89772 -13.73995 -13.47216 -13.11240 -12.98218 -12.75032 -12.54612 -12.34075 -12.10490 -12.06218 -11.63100 -11.45842 -11.39122 -10.62262 -10.33782 -9.46403 -9.04176 -8.17185 -6.35028 1.05861 1.40808 1.41872 1.50487 1.85088 2.39522 2.41578 3.07762 3.87533 3.98257 3.99739 4.21426 4.39118 4.39843 4.59429 4.70077 4.83360 4.84209 4.86475 5.02740 5.03827 5.17765 5.27835 5.35112 5.36240 5.46633 5.57862 5.63383 5.80785 5.86181 6.12817 6.39093 6.56326 6.65588 6.79609 7.33521 8.85745 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.034668 B = 0.007598 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.470420 B = 3684.413465 C = 4185.634392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.025 4.025 3 C -0.139 4.139 4 C -0.166 4.166 5 C -0.074 4.074 6 O -0.194 6.194 7 C 0.025 3.975 8 C 0.122 3.878 9 H 0.034 0.966 10 C -0.541 4.541 11 H 0.047 0.953 12 C 0.022 3.978 13 N -0.907 5.907 14 Si 0.960 3.040 15 H -0.272 1.272 16 H -0.276 1.276 17 H -0.272 1.272 18 C 0.080 3.920 19 N -0.847 5.847 20 C -0.246 4.246 21 H 0.060 0.940 22 H 0.075 0.925 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.225 0.775 29 H 0.267 0.733 30 H 0.085 0.915 31 H -0.007 1.007 32 H 0.340 0.660 33 H 0.330 0.670 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.405 9.110 -5.726 14.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.044 4.044 3 C -0.196 4.196 4 C -0.167 4.167 5 C -0.140 4.140 6 O -0.091 6.091 7 C -0.025 4.025 8 C 0.103 3.897 9 H 0.052 0.948 10 C -0.579 4.579 11 H 0.065 0.935 12 C -0.178 4.178 13 N -0.545 5.545 14 Si 0.785 3.215 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.197 1.197 18 C -0.051 4.051 19 N -0.376 5.376 20 C -0.265 4.265 21 H 0.079 0.921 22 H 0.094 0.906 23 H 0.065 0.935 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.241 0.759 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.011 0.989 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.713 8.597 -5.756 13.526 hybrid contribution 0.319 0.450 1.058 1.193 sum -8.394 9.047 -4.698 13.205 Atomic orbital electron populations 1.21807 0.93101 1.01749 1.02751 1.19580 0.96433 0.95475 0.92865 1.21826 1.00463 0.94543 1.02795 1.20593 1.02383 0.97624 0.96129 1.24236 1.03376 0.97446 0.88962 1.84021 1.52639 1.33815 1.38631 1.23156 0.96499 0.92927 0.89917 1.17380 0.90458 0.86606 0.95256 0.94815 1.21206 1.11611 0.92963 1.32156 0.93461 1.25716 0.99916 0.95023 0.97192 1.69977 1.37856 1.02204 1.44489 0.85581 0.78925 0.78072 0.78947 1.19691 1.20074 1.19741 1.21732 0.92188 0.97835 0.93326 1.58814 1.18889 1.25250 1.34668 1.21554 1.07194 1.01608 0.96143 0.92076 0.90607 0.93480 0.91000 0.94050 0.90457 0.92093 0.75893 0.92328 0.89709 0.98896 0.84829 0.85780 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.08 71.98 0.65 -2.02 16 2 C -0.02 -0.61 3.30 -11.54 -0.04 -0.65 16 3 C -0.14 -2.88 9.08 71.98 0.65 -2.23 16 4 C -0.17 -5.49 4.89 -19.94 -0.10 -5.59 16 5 C -0.07 -2.48 11.46 66.97 0.77 -1.71 16 6 O -0.19 -8.47 10.65 -2.46 -0.03 -8.50 16 7 C 0.03 1.18 4.80 24.84 0.12 1.30 16 8 C 0.12 6.45 2.39 -12.28 -0.03 6.42 16 9 H 0.03 1.97 8.10 -2.39 -0.02 1.95 16 10 C -0.54 -30.92 8.55 25.60 0.22 -30.70 16 11 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 12 C 0.02 1.21 5.29 84.65 0.45 1.66 16 13 N -0.91 -51.97 11.30 21.45 0.24 -51.72 16 14 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 C 0.08 3.98 6.07 86.30 0.52 4.50 16 19 N -0.85 -35.18 9.62 -186.72 -1.80 -36.98 16 20 C -0.25 -10.04 10.73 22.19 0.24 -9.80 16 21 H 0.06 1.09 8.02 -2.39 -0.02 1.07 16 22 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 25 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.16 8.02 -2.39 -0.02 1.14 16 28 H 0.22 5.36 8.06 -2.91 -0.02 5.33 16 29 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.08 4.69 5.96 -2.39 -0.01 4.67 16 31 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.34 12.07 9.08 -89.69 -0.81 11.25 16 33 H 0.33 13.00 8.07 -89.69 -0.72 12.28 16 34 H 0.14 5.42 8.06 -2.91 -0.02 5.40 16 Total: -1.00 -62.75 286.31 3.46 -59.29 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: -0.45 Total: 30.87 kcal Atomic # 6 Polarization: -42.27 SS G_CDS: 3.46 Total: -38.81 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -1.55 Total: -88.70 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.03 Total: -8.50 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -62.75 3.46 -59.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105636.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.952 kcal (2) G-P(sol) polarization free energy of solvation -62.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds