Wall clock time and date at job start Mon Mar 30 2020 02:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00366 * 2 1 4 4 H 1.48504 * 109.47383 * 270.00096 * 3 2 1 5 5 H 1.48505 * 109.46809 * 29.99977 * 3 2 1 6 6 H 1.48502 * 109.47169 * 149.99730 * 3 2 1 7 7 C 1.37878 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00379 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99994 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.45270 * 59.99996 * 9 7 2 11 11 C 1.53137 * 109.45344 * 300.04147 * 9 7 2 12 12 C 1.52961 * 109.41681 * 181.20675 * 11 9 7 13 13 C 1.53015 * 109.56475 * 60.58970 * 12 11 9 14 14 C 1.53134 * 109.39485 * 299.41702 * 13 12 11 15 15 C 1.52164 * 109.56775 * 58.77030 * 14 13 12 16 16 C 1.53813 * 110.69975 * 65.46572 * 15 14 13 17 17 N 1.46921 * 105.33243 * 142.70829 * 16 15 14 18 18 C 1.34503 * 111.30342 * 343.60281 * 17 16 15 19 19 O 1.21276 * 124.94605 * 180.40352 * 18 17 16 20 20 C 1.51439 * 110.11324 * 0.38245 * 18 17 16 21 21 H 0.97001 * 120.00283 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.48321 * 301.20639 * 11 9 7 23 23 H 1.09000 * 109.48384 * 61.25493 * 11 9 7 24 24 H 1.09003 * 109.46348 * 300.56342 * 12 11 9 25 25 H 1.09003 * 109.46080 * 180.61811 * 12 11 9 26 26 H 1.08998 * 109.48097 * 179.44282 * 13 12 11 27 27 H 1.08992 * 109.48205 * 59.40191 * 13 12 11 28 28 H 1.08996 * 109.45782 * 298.74117 * 14 13 12 29 29 H 1.09002 * 109.45395 * 178.79727 * 14 13 12 30 30 H 1.08998 * 110.26929 * 261.67156 * 16 15 14 31 31 H 1.09000 * 110.27181 * 23.64781 * 16 15 14 32 32 H 0.96999 * 124.35022 * 163.58354 * 17 16 15 33 33 H 1.09001 * 110.51166 * 257.03822 * 20 18 17 34 34 H 1.08998 * 110.51144 * 134.32628 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8742 -0.6800 0.8912 11 6 4.0220 -0.4715 -1.2488 12 6 5.5513 -0.4983 -1.2627 13 6 6.0381 -1.9486 -1.2929 14 6 5.5384 -2.6789 -0.0431 15 6 4.0183 -2.6289 0.0027 16 6 3.4127 -3.4206 -1.1688 17 7 2.2149 -4.0709 -0.6202 18 6 2.2326 -4.0731 0.7247 19 8 1.3701 -4.5520 1.4301 20 6 3.4867 -3.3910 1.2301 21 1 -0.4850 0.8400 -0.0004 22 1 3.6414 -0.9722 -2.1391 23 1 3.6771 0.5624 -1.2374 24 1 5.9313 -0.0064 -0.3672 25 1 5.9157 0.0254 -2.1465 26 1 7.1278 -1.9659 -1.3127 27 1 5.6502 -2.4438 -2.1829 28 1 5.9444 -2.1965 0.8460 29 1 5.8667 -3.7178 -0.0741 30 1 3.1382 -2.7453 -1.9791 31 1 4.1208 -4.1689 -1.5249 32 1 1.5026 -4.4497 -1.1587 33 1 4.2145 -4.1298 1.5657 34 1 3.2460 -2.6973 2.0356 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261109521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:08 Heat of formation + Delta-G solvation = -45.668889 kcal Electronic energy + Delta-G solvation = -16568.526807 eV Core-core repulsion = 14079.600206 eV Total energy + Delta-G solvation = -2488.926601 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.43782 -37.51748 -34.66332 -32.85237 -31.12545 -30.36298 -27.33000 -25.68097 -23.92640 -21.64021 -20.75810 -19.76525 -17.82662 -16.83230 -16.62684 -15.38466 -14.88414 -14.15795 -13.74567 -13.67223 -13.58224 -13.16538 -12.65422 -12.43367 -12.09945 -11.97166 -11.62683 -11.06594 -11.00496 -10.88606 -10.63335 -10.39539 -10.09252 -9.86556 -9.67998 -9.09886 -9.04035 -8.82693 -8.50529 -8.14527 -6.03107 -4.03874 3.25577 3.37043 3.39500 3.46093 4.20443 4.42298 4.95069 5.09473 5.18521 5.29107 5.38502 5.54245 5.68603 5.79820 5.91222 6.01866 6.04578 6.08603 6.18828 6.25999 6.30653 6.45245 6.54517 6.59328 6.65390 6.81668 6.92852 7.11920 7.43894 7.57373 7.75746 7.79986 8.53502 9.02797 9.09581 9.58039 11.08917 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.022048 B = 0.016566 C = 0.010709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.636124 B = 1689.791497 C = 2613.942205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.281 1.281 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.091 0.909 9 C 0.028 3.972 10 H 0.031 0.969 11 C -0.123 4.123 12 C -0.124 4.124 13 C -0.114 4.114 14 C -0.104 4.104 15 C -0.052 4.052 16 C 0.123 3.877 17 N -0.723 5.723 18 C 0.540 3.460 19 O -0.556 6.556 20 C -0.137 4.137 21 H 0.262 0.738 22 H 0.061 0.939 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.402 0.598 33 H 0.085 0.915 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.370 -3.836 -3.618 13.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.228 1.228 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.109 0.891 9 C 0.009 3.991 10 H 0.049 0.951 11 C -0.160 4.160 12 C -0.161 4.161 13 C -0.151 4.151 14 C -0.142 4.142 15 C -0.053 4.053 16 C -0.001 4.001 17 N -0.376 5.376 18 C 0.328 3.672 19 O -0.434 6.434 20 C -0.177 4.177 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.239 0.761 33 H 0.103 0.897 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.854 -3.930 -3.173 12.885 hybrid contribution 0.019 1.074 -0.411 1.150 sum 11.873 -2.856 -3.584 12.726 Atomic orbital electron populations 1.69908 1.06286 1.26718 1.50590 1.25018 0.94580 0.98766 0.94591 0.86937 0.79943 0.84132 0.77683 1.20830 1.22802 1.19099 1.21367 0.88614 0.95272 1.50859 0.89119 1.19054 0.96882 0.89412 0.93742 0.95068 1.22034 0.92642 1.00224 1.01085 1.21620 0.97872 0.95974 1.00655 1.21509 0.99157 0.96284 0.98163 1.21456 0.94646 0.99623 0.98434 1.20871 0.93653 0.97678 0.93080 1.22003 0.85809 0.94812 0.97526 1.46107 1.23769 1.60292 1.07464 1.20670 0.87277 0.76802 0.82430 1.90665 1.42704 1.49255 1.60794 1.22245 0.95747 0.99813 0.99931 0.92795 0.92033 0.93495 0.92662 0.93256 0.92821 0.92102 0.91737 0.92438 0.89876 0.93021 0.76123 0.89722 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 2 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 3 Si 0.88 21.46 24.36 -169.99 -4.14 17.32 16 4 H -0.28 -6.66 6.88 56.52 0.39 -6.27 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.27 -6.14 6.53 56.52 0.37 -5.77 16 7 C -0.52 -13.71 7.84 -34.44 -0.27 -13.98 16 8 H 0.09 2.56 4.60 -52.49 -0.24 2.32 16 9 C 0.03 0.59 0.94 -92.12 -0.09 0.50 16 10 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 11 C -0.12 -2.37 4.49 -26.68 -0.12 -2.49 16 12 C -0.12 -1.90 5.90 -26.74 -0.16 -2.05 16 13 C -0.11 -1.47 5.76 -26.65 -0.15 -1.62 16 14 C -0.10 -1.42 4.51 -27.09 -0.12 -1.54 16 15 C -0.05 -0.90 0.53 -154.45 -0.08 -0.98 16 16 C 0.12 2.01 5.31 -3.39 -0.02 1.99 16 17 N -0.72 -13.46 5.16 -59.37 -0.31 -13.76 16 18 C 0.54 11.56 6.57 -10.75 -0.07 11.49 16 19 O -0.56 -14.05 18.03 5.56 0.10 -13.95 16 20 C -0.14 -2.51 5.61 -27.03 -0.15 -2.66 16 21 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 22 H 0.06 1.16 6.44 -51.93 -0.33 0.83 16 23 H 0.05 1.00 3.30 -51.93 -0.17 0.83 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.75 7.49 -51.93 -0.39 0.36 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.67 8.07 -51.93 -0.42 0.26 16 30 H 0.08 1.43 6.04 -51.93 -0.31 1.12 16 31 H 0.05 0.69 7.81 -51.93 -0.41 0.29 16 32 H 0.40 6.93 8.96 -40.82 -0.37 6.57 16 33 H 0.08 1.27 7.86 -51.93 -0.41 0.87 16 34 H 0.10 2.05 7.85 -51.93 -0.41 1.64 16 LS Contribution 251.43 15.07 3.79 3.79 Total: -1.00 -31.99 251.43 -5.82 -37.80 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.70 Total: 4.79 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -1.33 Total: -9.41 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.47 Total: -40.35 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.10 Total: -13.95 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.14 Total: 17.32 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.99 -5.82 -37.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.865 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds