Wall clock time and date at job start Mon Mar 30 2020 02:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00366 * 2 1 4 4 H 1.48504 * 109.47383 * 270.00096 * 3 2 1 5 5 H 1.48505 * 109.46809 * 29.99977 * 3 2 1 6 6 H 1.48502 * 109.47169 * 149.99730 * 3 2 1 7 7 C 1.37878 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00379 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99994 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.45270 * 59.99996 * 9 7 2 11 11 C 1.53137 * 109.45344 * 300.04147 * 9 7 2 12 12 C 1.52961 * 109.41681 * 181.20675 * 11 9 7 13 13 C 1.53015 * 109.56475 * 60.58970 * 12 11 9 14 14 C 1.53134 * 109.39485 * 299.41702 * 13 12 11 15 15 C 1.52164 * 109.56775 * 58.77030 * 14 13 12 16 16 C 1.53813 * 110.69975 * 65.46572 * 15 14 13 17 17 N 1.46921 * 105.33243 * 142.70829 * 16 15 14 18 18 C 1.34503 * 111.30342 * 343.60281 * 17 16 15 19 19 O 1.21276 * 124.94605 * 180.40352 * 18 17 16 20 20 C 1.51439 * 110.11324 * 0.38245 * 18 17 16 21 21 H 0.97001 * 120.00283 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.48321 * 301.20639 * 11 9 7 23 23 H 1.09000 * 109.48384 * 61.25493 * 11 9 7 24 24 H 1.09003 * 109.46348 * 300.56342 * 12 11 9 25 25 H 1.09003 * 109.46080 * 180.61811 * 12 11 9 26 26 H 1.08998 * 109.48097 * 179.44282 * 13 12 11 27 27 H 1.08992 * 109.48205 * 59.40191 * 13 12 11 28 28 H 1.08996 * 109.45782 * 298.74117 * 14 13 12 29 29 H 1.09002 * 109.45395 * 178.79727 * 14 13 12 30 30 H 1.08998 * 110.26929 * 261.67156 * 16 15 14 31 31 H 1.09000 * 110.27181 * 23.64781 * 16 15 14 32 32 H 0.96999 * 124.35022 * 163.58354 * 17 16 15 33 33 H 1.09001 * 110.51166 * 257.03822 * 20 18 17 34 34 H 1.08998 * 110.51144 * 134.32628 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8742 -0.6800 0.8912 11 6 4.0220 -0.4715 -1.2488 12 6 5.5513 -0.4983 -1.2627 13 6 6.0381 -1.9486 -1.2929 14 6 5.5384 -2.6789 -0.0431 15 6 4.0183 -2.6289 0.0027 16 6 3.4127 -3.4206 -1.1688 17 7 2.2149 -4.0709 -0.6202 18 6 2.2326 -4.0731 0.7247 19 8 1.3701 -4.5520 1.4301 20 6 3.4867 -3.3910 1.2301 21 1 -0.4850 0.8400 -0.0004 22 1 3.6414 -0.9722 -2.1391 23 1 3.6771 0.5624 -1.2374 24 1 5.9313 -0.0064 -0.3672 25 1 5.9157 0.0254 -2.1465 26 1 7.1278 -1.9659 -1.3127 27 1 5.6502 -2.4438 -2.1829 28 1 5.9444 -2.1965 0.8460 29 1 5.8667 -3.7178 -0.0741 30 1 3.1382 -2.7453 -1.9791 31 1 4.1208 -4.1689 -1.5249 32 1 1.5026 -4.4497 -1.1587 33 1 4.2145 -4.1298 1.5657 34 1 3.2460 -2.6973 2.0356 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261109521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:08 Heat of formation + Delta-G solvation = -69.608499 kcal Electronic energy + Delta-G solvation = -16569.564907 eV Core-core repulsion = 14079.600206 eV Total energy + Delta-G solvation = -2489.964701 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.92550 -39.09350 -36.19780 -34.78377 -32.51804 -31.98868 -28.78336 -27.28190 -25.45096 -23.18256 -22.10203 -21.28314 -19.23996 -18.76528 -18.22468 -16.98682 -16.58843 -15.77360 -15.36953 -15.02161 -14.89608 -14.65895 -14.52637 -13.85354 -13.57737 -13.47417 -13.21679 -12.66095 -12.44617 -12.33900 -12.01309 -11.85959 -11.65341 -11.56187 -11.16354 -10.80093 -10.77016 -10.45124 -10.37884 -9.71357 -8.19248 -6.21637 1.30107 1.36723 1.45625 1.79957 2.37205 2.75222 3.15534 3.63183 3.69584 3.94585 4.18145 4.31238 4.45929 4.51898 4.65094 4.72373 4.77080 4.85232 4.89725 5.04556 5.10080 5.19657 5.23863 5.37577 5.42025 5.48462 5.58909 5.67287 5.79678 5.87179 6.09792 6.22930 6.45309 6.92896 7.43919 7.45996 8.96223 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.022048 B = 0.016566 C = 0.010709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.636124 B = 1689.791497 C = 2613.942205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.006 3.994 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.315 1.315 6 H -0.245 1.245 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.024 3.976 10 H 0.020 0.980 11 C -0.123 4.123 12 C -0.120 4.120 13 C -0.110 4.110 14 C -0.099 4.099 15 C -0.049 4.049 16 C 0.121 3.879 17 N -0.719 5.719 18 C 0.523 3.477 19 O -0.610 6.610 20 C -0.134 4.134 21 H 0.258 0.742 22 H 0.061 0.939 23 H 0.024 0.976 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.404 0.596 33 H 0.126 0.874 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.432 -4.292 -4.727 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.190 4.190 3 Si 0.772 3.228 4 H -0.197 1.197 5 H -0.244 1.244 6 H -0.169 1.169 7 C -0.549 4.549 8 H 0.080 0.920 9 C 0.006 3.994 10 H 0.039 0.961 11 C -0.160 4.160 12 C -0.158 4.158 13 C -0.147 4.147 14 C -0.136 4.136 15 C -0.050 4.050 16 C -0.002 4.002 17 N -0.371 5.371 18 C 0.312 3.688 19 O -0.493 6.493 20 C -0.173 4.173 21 H 0.067 0.933 22 H 0.080 0.920 23 H 0.042 0.958 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.241 0.759 33 H 0.143 0.857 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 15.981 -4.385 -4.325 17.127 hybrid contribution -1.290 1.142 -0.083 1.725 sum 14.691 -3.243 -4.409 15.677 Atomic orbital electron populations 1.70090 1.08375 1.27231 1.54185 1.25856 0.95123 1.02710 0.95264 0.85942 0.79125 0.79564 0.78153 1.19731 1.24400 1.16875 1.21845 0.91786 0.93801 1.47445 0.91981 1.19037 0.93242 0.92782 0.94378 0.96149 1.21930 0.96172 0.98265 0.99639 1.21600 0.94135 0.98466 1.01596 1.21526 1.01079 0.94061 0.98025 1.21466 0.90793 1.02039 0.99311 1.20870 0.96751 0.94701 0.92650 1.22250 0.85499 0.95751 0.96722 1.46243 1.24608 1.59321 1.06894 1.21357 0.87826 0.76481 0.83153 1.90620 1.44799 1.51729 1.62142 1.22290 0.95133 1.00161 0.99763 0.93324 0.92022 0.95790 0.92698 0.91417 0.89652 0.91035 0.91231 0.89126 0.90778 0.88287 0.75865 0.85656 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.13 13.96 21.45 0.30 -60.83 16 2 C 0.01 0.35 5.45 84.66 0.46 0.81 16 3 Si 0.94 45.11 24.36 68.60 1.67 46.78 16 4 H -0.27 -12.34 6.88 99.48 0.68 -11.65 16 5 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 6 H -0.24 -10.68 6.53 99.48 0.65 -10.04 16 7 C -0.51 -27.17 7.84 25.60 0.20 -26.97 16 8 H 0.06 3.62 4.60 -2.91 -0.01 3.61 16 9 C 0.02 0.99 0.94 -11.77 -0.01 0.98 16 10 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 11 C -0.12 -4.42 4.49 30.63 0.14 -4.28 16 12 C -0.12 -3.12 5.90 30.59 0.18 -2.94 16 13 C -0.11 -2.14 5.76 30.64 0.18 -1.96 16 14 C -0.10 -2.12 4.51 30.36 0.14 -1.98 16 15 C -0.05 -1.54 0.53 -52.14 -0.03 -1.57 16 16 C 0.12 3.57 5.31 86.57 0.46 4.03 16 17 N -0.72 -26.25 5.16 -460.31 -2.38 -28.63 16 18 C 0.52 22.44 6.57 87.94 0.58 23.02 16 19 O -0.61 -31.94 18.03 -3.02 -0.05 -32.00 16 20 C -0.13 -4.65 5.61 30.40 0.17 -4.48 16 21 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 22 H 0.06 2.19 6.44 -2.39 -0.02 2.17 16 23 H 0.02 0.97 3.30 -2.39 -0.01 0.96 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.29 7.49 -2.39 -0.02 1.27 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.45 8.07 -2.39 -0.02 1.43 16 30 H 0.07 2.36 6.04 -2.39 -0.01 2.35 16 31 H 0.10 2.09 7.81 -2.39 -0.02 2.07 16 32 H 0.40 14.01 8.96 -92.71 -0.83 13.18 16 33 H 0.13 3.31 7.86 -2.39 -0.02 3.29 16 34 H 0.08 3.15 7.85 -2.39 -0.02 3.13 16 Total: -1.00 -73.99 251.43 2.20 -71.78 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.20 Total: 18.24 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 2.46 Total: -15.35 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -2.08 Total: -89.45 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.05 Total: -32.00 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.67 Total: 46.78 kcal Total: -73.99 2.20 -71.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.176 kcal (2) G-P(sol) polarization free energy of solvation -73.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds