Wall clock time and date at job start Mon Mar 30 2020 03:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34509 * 125.79191 * 2 1 4 4 C 1.41385 * 106.84431 * 180.02562 * 3 2 1 5 5 C 1.34516 * 106.83959 * 359.97438 * 4 3 2 6 6 C 1.50692 * 125.78556 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47861 * 14.44701 * 6 5 4 8 8 C 1.50707 * 109.46999 * 254.44793 * 6 5 4 9 9 H 1.08007 * 119.99621 * 0.02562 * 8 6 5 10 10 C 1.37873 * 120.00006 * 180.02562 * 8 6 5 11 11 N 1.31511 * 120.00072 * 0.02562 * 10 8 6 12 12 Si 1.86807 * 119.99833 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46936 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46815 * 120.00245 * 12 10 8 15 15 H 1.48501 * 109.47283 * 240.00216 * 12 10 8 16 16 N 1.46906 * 109.47282 * 134.45328 * 6 5 4 17 17 C 1.46894 * 110.99535 * 276.68012 * 16 6 5 18 18 C 1.53005 * 109.47207 * 273.33218 * 17 16 6 19 19 C 1.53004 * 109.47213 * 153.33411 * 17 16 6 20 20 O 1.34301 * 108.41760 * 0.25931 * 5 4 3 21 21 H 1.08999 * 109.46749 * 90.00677 * 1 2 3 22 22 H 1.08999 * 109.47426 * 209.99996 * 1 2 3 23 23 H 1.08989 * 109.47257 * 330.00438 * 1 2 3 24 24 H 1.07999 * 126.57712 * 0.02562 * 3 2 1 25 25 H 1.08001 * 126.58052 * 180.02562 * 4 3 2 26 26 H 0.97003 * 120.00151 * 179.97438 * 11 10 8 27 27 H 1.00895 * 110.99481 * 40.62818 * 16 6 5 28 28 H 1.08997 * 109.47769 * 33.33483 * 17 16 6 29 29 H 1.08998 * 109.46594 * 56.12550 * 18 17 16 30 30 H 1.08995 * 109.46976 * 176.12548 * 18 17 16 31 31 H 1.08994 * 109.46955 * 296.12613 * 18 17 16 32 32 H 1.08993 * 109.47295 * 179.97438 * 19 17 16 33 33 H 1.08994 * 109.47220 * 300.00175 * 19 17 16 34 34 H 1.09010 * 109.46633 * 59.99732 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7123 -0.0004 6 6 4.7706 -1.6378 -0.0003 7 1 5.6686 -1.0757 0.2559 8 6 4.9330 -2.2472 -1.3690 9 1 4.2440 -1.9896 -2.1600 10 6 5.9608 -3.1335 -1.6115 11 7 6.7993 -3.4475 -0.6483 12 14 6.1616 -3.8894 -3.3080 13 1 5.0968 -3.3770 -4.2073 14 1 7.4917 -3.5244 -3.8582 15 1 6.0562 -5.3673 -3.2071 16 7 4.5614 -2.7039 0.9886 17 6 4.9421 -2.2554 2.3346 18 6 6.4381 -2.4950 2.5479 19 6 4.1458 -3.0412 3.3783 20 8 2.2925 -1.0894 -0.0054 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5137 24 1 1.9665 2.1203 0.0004 25 1 4.5213 1.2433 -0.0004 26 1 7.5223 -4.0714 -0.8188 27 1 3.6066 -3.0295 0.9726 28 1 4.7262 -1.1920 2.4380 29 1 7.0023 -1.9911 1.7632 30 1 6.7345 -2.0998 3.5195 31 1 6.6433 -3.5649 2.5130 32 1 4.4286 -2.7087 4.3770 33 1 3.0801 -2.8705 3.2264 34 1 4.3618 -4.1047 3.2749 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261118876.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:38 Heat of formation + Delta-G solvation = 4.757741 kcal Electronic energy + Delta-G solvation = -15713.130984 eV Core-core repulsion = 13226.391046 eV Total energy + Delta-G solvation = -2486.739939 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.79219 -36.40862 -33.01713 -32.46221 -31.54427 -29.93430 -26.60458 -26.32399 -25.11627 -21.77911 -20.99909 -19.66514 -19.15731 -16.53431 -15.94827 -15.27937 -14.64104 -14.43903 -13.94484 -13.51289 -12.98118 -12.77812 -12.67519 -12.23917 -12.04644 -11.64225 -11.56866 -11.42700 -11.22233 -10.93868 -10.79202 -10.76912 -10.40880 -9.95507 -9.86145 -9.28708 -9.09288 -8.42098 -7.45973 -6.96123 -5.88766 -4.02651 2.50066 3.33769 3.36137 3.42769 3.48501 3.71269 4.49521 5.20265 5.28678 5.56027 5.63785 5.67608 5.68450 5.78627 5.84443 5.88891 5.99893 6.15245 6.35376 6.52612 6.60235 6.60769 6.64421 6.73584 6.94091 7.05054 7.12082 7.30679 7.41103 7.91265 7.95985 8.15117 8.59292 8.76658 9.07767 9.64423 11.14232 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.020268 B = 0.011280 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.152100 B = 2481.773155 C = 3404.977578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.056 4.056 3 C -0.209 4.209 4 C -0.250 4.250 5 C 0.022 3.978 6 C 0.293 3.707 7 H 0.067 0.933 8 C -0.527 4.527 9 H 0.055 0.945 10 C 0.088 3.912 11 N -0.843 5.843 12 Si 0.888 3.112 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.284 1.284 16 N -0.640 5.640 17 C 0.077 3.923 18 C -0.120 4.120 19 C -0.149 4.149 20 O -0.171 6.171 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.134 0.866 25 H 0.137 0.863 26 H 0.256 0.744 27 H 0.320 0.680 28 H 0.021 0.979 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 4.527 4.606 9.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C -0.228 4.228 4 C -0.269 4.269 5 C -0.031 4.031 6 C 0.185 3.815 7 H 0.084 0.916 8 C -0.566 4.566 9 H 0.073 0.927 10 C -0.119 4.119 11 N -0.478 5.478 12 Si 0.716 3.284 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.210 1.210 16 N -0.270 5.270 17 C -0.033 4.033 18 C -0.178 4.178 19 C -0.206 4.206 20 O -0.067 6.067 21 H 0.090 0.910 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.152 0.848 25 H 0.155 0.845 26 H 0.066 0.934 27 H 0.138 0.862 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.195 3.801 4.559 8.579 hybrid contribution -0.538 0.487 -0.758 1.050 sum -6.733 4.289 3.801 8.841 Atomic orbital electron populations 1.20118 0.86270 1.02992 1.02646 1.22198 0.93670 0.85025 1.09661 1.21406 0.93332 0.98418 1.09642 1.21486 0.97265 0.94616 1.13567 1.25019 0.83641 0.96166 0.98236 1.18290 0.84714 0.85352 0.93107 0.91594 1.20820 1.13863 1.28325 0.93591 0.92688 1.24853 0.95315 0.95577 0.96142 1.70062 1.14788 1.32170 1.30761 0.86634 0.77770 0.79140 0.84900 1.19964 1.21148 1.21007 1.61003 1.26904 1.37249 1.01822 1.21460 0.95975 0.95443 0.90406 1.21615 0.95444 1.02267 0.98512 1.21965 0.99079 1.01260 0.98335 1.83969 1.17051 1.34477 1.71225 0.90964 0.91213 0.90338 0.84784 0.84491 0.93426 0.86193 0.96108 0.91593 0.95580 0.92547 0.93350 0.93806 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.82 10.42 36.00 0.38 -0.45 16 2 C -0.06 -1.03 7.32 -35.63 -0.26 -1.29 16 3 C -0.21 -3.84 10.81 -39.70 -0.43 -4.26 16 4 C -0.25 -5.22 10.79 -39.70 -0.43 -5.65 16 5 C 0.02 0.52 5.57 -35.63 -0.20 0.32 16 6 C 0.29 7.31 2.13 -70.01 -0.15 7.16 16 7 H 0.07 1.75 7.20 -51.93 -0.37 1.38 16 8 C -0.53 -14.52 8.75 -34.44 -0.30 -14.82 16 9 H 0.05 1.56 7.74 -52.48 -0.41 1.16 16 10 C 0.09 2.41 5.39 -17.82 -0.10 2.31 16 11 N -0.84 -23.27 12.77 55.43 0.71 -22.56 16 12 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 16 N -0.64 -15.01 5.35 -102.17 -0.55 -15.55 16 17 C 0.08 1.57 3.02 -67.71 -0.20 1.37 16 18 C -0.12 -2.44 9.43 37.16 0.35 -2.09 16 19 C -0.15 -2.54 9.17 37.16 0.34 -2.20 16 20 O -0.17 -3.76 10.24 5.70 0.06 -3.70 16 21 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.08 0.82 8.14 -51.94 -0.42 0.40 16 24 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 25 H 0.14 2.67 8.06 -52.49 -0.42 2.25 16 26 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.32 7.44 7.76 -39.29 -0.31 7.13 16 28 H 0.02 0.44 7.56 -51.93 -0.39 0.05 16 29 H 0.07 1.50 7.49 -51.93 -0.39 1.11 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 34 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 LS Contribution 289.31 15.07 4.36 4.36 Total: -1.00 -28.75 289.31 -6.67 -35.42 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.23 Total: 5.39 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -1.00 Total: -19.60 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.16 Total: -38.11 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: 0.06 Total: -3.70 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.75 -6.67 -35.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118876.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.182 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds