Wall clock time and date at job start Mon Mar 30 2020 03:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34509 * 125.79191 * 2 1 4 4 C 1.41385 * 106.84431 * 180.02562 * 3 2 1 5 5 C 1.34516 * 106.83959 * 359.97438 * 4 3 2 6 6 C 1.50692 * 125.78556 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47861 * 14.44701 * 6 5 4 8 8 C 1.50707 * 109.46999 * 254.44793 * 6 5 4 9 9 H 1.08007 * 119.99621 * 0.02562 * 8 6 5 10 10 C 1.37873 * 120.00006 * 180.02562 * 8 6 5 11 11 N 1.31511 * 120.00072 * 0.02562 * 10 8 6 12 12 Si 1.86807 * 119.99833 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46936 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46815 * 120.00245 * 12 10 8 15 15 H 1.48501 * 109.47283 * 240.00216 * 12 10 8 16 16 N 1.46906 * 109.47282 * 134.45328 * 6 5 4 17 17 C 1.46894 * 110.99535 * 276.68012 * 16 6 5 18 18 C 1.53005 * 109.47207 * 273.33218 * 17 16 6 19 19 C 1.53004 * 109.47213 * 153.33411 * 17 16 6 20 20 O 1.34301 * 108.41760 * 0.25931 * 5 4 3 21 21 H 1.08999 * 109.46749 * 90.00677 * 1 2 3 22 22 H 1.08999 * 109.47426 * 209.99996 * 1 2 3 23 23 H 1.08989 * 109.47257 * 330.00438 * 1 2 3 24 24 H 1.07999 * 126.57712 * 0.02562 * 3 2 1 25 25 H 1.08001 * 126.58052 * 180.02562 * 4 3 2 26 26 H 0.97003 * 120.00151 * 179.97438 * 11 10 8 27 27 H 1.00895 * 110.99481 * 40.62818 * 16 6 5 28 28 H 1.08997 * 109.47769 * 33.33483 * 17 16 6 29 29 H 1.08998 * 109.46594 * 56.12550 * 18 17 16 30 30 H 1.08995 * 109.46976 * 176.12548 * 18 17 16 31 31 H 1.08994 * 109.46955 * 296.12613 * 18 17 16 32 32 H 1.08993 * 109.47295 * 179.97438 * 19 17 16 33 33 H 1.08994 * 109.47220 * 300.00175 * 19 17 16 34 34 H 1.09010 * 109.46633 * 59.99732 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7123 -0.0004 6 6 4.7706 -1.6378 -0.0003 7 1 5.6686 -1.0757 0.2559 8 6 4.9330 -2.2472 -1.3690 9 1 4.2440 -1.9896 -2.1600 10 6 5.9608 -3.1335 -1.6115 11 7 6.7993 -3.4475 -0.6483 12 14 6.1616 -3.8894 -3.3080 13 1 5.0968 -3.3770 -4.2073 14 1 7.4917 -3.5244 -3.8582 15 1 6.0562 -5.3673 -3.2071 16 7 4.5614 -2.7039 0.9886 17 6 4.9421 -2.2554 2.3346 18 6 6.4381 -2.4950 2.5479 19 6 4.1458 -3.0412 3.3783 20 8 2.2925 -1.0894 -0.0054 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5137 24 1 1.9665 2.1203 0.0004 25 1 4.5213 1.2433 -0.0004 26 1 7.5223 -4.0714 -0.8188 27 1 3.6066 -3.0295 0.9726 28 1 4.7262 -1.1920 2.4380 29 1 7.0023 -1.9911 1.7632 30 1 6.7345 -2.0998 3.5195 31 1 6.6433 -3.5649 2.5130 32 1 4.4286 -2.7087 4.3770 33 1 3.0801 -2.8705 3.2264 34 1 4.3618 -4.1047 3.2749 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261118876.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:37 Heat of formation + Delta-G solvation = -12.822763 kcal Electronic energy + Delta-G solvation = -15713.893332 eV Core-core repulsion = 13226.391046 eV Total energy + Delta-G solvation = -2487.502286 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.37103 -38.15199 -34.90233 -33.95987 -33.23187 -31.49264 -28.34272 -27.84653 -26.84556 -23.55528 -22.57539 -21.29153 -20.77411 -18.56170 -17.58904 -16.90044 -16.37518 -16.29559 -15.54102 -15.15971 -14.56718 -14.04647 -13.91787 -13.71877 -13.61630 -13.41420 -13.18874 -12.89452 -12.78698 -12.75469 -12.53792 -12.50736 -12.12264 -11.76414 -11.61596 -11.22409 -10.68659 -10.51657 -9.05704 -8.75308 -7.95436 -6.17500 0.95779 1.42458 1.45241 1.55129 1.79976 2.21214 2.48906 3.21762 3.83827 3.96910 4.19448 4.25643 4.32273 4.34579 4.59348 4.60273 4.74180 4.86807 4.89697 4.93474 5.01859 5.09097 5.12620 5.14047 5.30896 5.39425 5.47101 5.69359 5.76010 5.79546 6.14396 6.36892 6.63212 6.96068 7.07648 7.52124 9.04832 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.020268 B = 0.011280 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.152100 B = 2481.773155 C = 3404.977578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.052 4.052 3 C -0.217 4.217 4 C -0.252 4.252 5 C -0.016 4.016 6 C 0.302 3.698 7 H 0.038 0.962 8 C -0.548 4.548 9 H 0.036 0.964 10 C 0.048 3.952 11 N -0.861 5.861 12 Si 0.948 3.052 13 H -0.278 1.278 14 H -0.278 1.278 15 H -0.280 1.280 16 N -0.652 5.652 17 C 0.076 3.924 18 C -0.110 4.110 19 C -0.138 4.138 20 O -0.192 6.192 21 H 0.088 0.912 22 H 0.077 0.923 23 H 0.111 0.889 24 H 0.170 0.830 25 H 0.141 0.859 26 H 0.257 0.743 27 H 0.318 0.682 28 H 0.013 0.987 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.413 5.068 5.102 11.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C -0.236 4.236 4 C -0.272 4.272 5 C -0.068 4.068 6 C 0.193 3.807 7 H 0.056 0.944 8 C -0.587 4.587 9 H 0.054 0.946 10 C -0.158 4.158 11 N -0.496 5.496 12 Si 0.774 3.226 13 H -0.203 1.203 14 H -0.204 1.204 15 H -0.206 1.206 16 N -0.281 5.281 17 C -0.034 4.034 18 C -0.168 4.168 19 C -0.195 4.195 20 O -0.089 6.089 21 H 0.106 0.894 22 H 0.096 0.904 23 H 0.129 0.871 24 H 0.188 0.812 25 H 0.159 0.841 26 H 0.066 0.934 27 H 0.135 0.865 28 H 0.031 0.969 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.732 4.349 5.060 10.213 hybrid contribution -0.118 0.397 -0.892 0.983 sum -7.850 4.746 4.168 10.076 Atomic orbital electron populations 1.20397 0.82182 1.05040 1.04278 1.23329 0.95863 0.84022 1.06879 1.21775 0.91807 1.00289 1.09712 1.21776 0.99043 0.94125 1.12224 1.24548 0.83896 0.96491 1.01860 1.17791 0.84988 0.85564 0.92310 0.94431 1.21002 1.13909 1.29066 0.94701 0.94572 1.25487 0.95041 0.95916 0.99339 1.70166 1.14942 1.32356 1.32134 0.85707 0.77652 0.78273 0.80982 1.20332 1.20376 1.20588 1.60854 1.26663 1.37340 1.03238 1.21526 0.96463 0.95549 0.89898 1.21500 0.95096 1.01065 0.99103 1.21859 0.98788 1.00479 0.98422 1.83934 1.16894 1.36281 1.71785 0.89370 0.90360 0.87099 0.81228 0.84064 0.93377 0.86475 0.96871 0.94858 0.92289 0.93784 0.90631 0.93271 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.40 10.42 71.24 0.74 -0.65 16 2 C -0.05 -1.79 7.32 24.83 0.18 -1.61 16 3 C -0.22 -7.54 10.81 22.19 0.24 -7.30 16 4 C -0.25 -10.56 10.79 22.19 0.24 -10.32 16 5 C -0.02 -0.73 5.57 24.83 0.14 -0.59 16 6 C 0.30 15.67 2.13 43.42 0.09 15.76 16 7 H 0.04 2.13 7.20 -2.39 -0.02 2.11 16 8 C -0.55 -31.27 8.75 25.60 0.22 -31.04 16 9 H 0.04 2.13 7.74 -2.91 -0.02 2.11 16 10 C 0.05 2.64 5.39 84.65 0.46 3.10 16 11 N -0.86 -48.64 12.77 21.45 0.27 -48.37 16 12 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 N -0.65 -31.37 5.35 -477.17 -2.55 -33.93 16 17 C 0.08 3.09 3.02 44.92 0.14 3.22 16 18 C -0.11 -4.47 9.43 71.98 0.68 -3.79 16 19 C -0.14 -4.50 9.17 71.98 0.66 -3.84 16 20 O -0.19 -8.42 10.24 -2.50 -0.03 -8.45 16 21 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 23 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.17 4.54 8.06 -2.91 -0.02 4.51 16 25 H 0.14 5.60 8.06 -2.91 -0.02 5.57 16 26 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 27 H 0.32 15.14 7.76 -89.70 -0.70 14.44 16 28 H 0.01 0.56 7.56 -2.39 -0.02 0.55 16 29 H 0.03 1.54 7.49 -2.39 -0.02 1.53 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 33 H 0.05 1.54 8.12 -2.39 -0.02 1.52 16 34 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -63.48 289.31 3.89 -59.59 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.38 Total: 21.79 kcal Atomic # 6 Polarization: -40.85 SS G_CDS: 3.79 Total: -37.06 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -2.28 Total: -82.29 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.03 Total: -8.45 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -63.48 3.89 -59.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118876.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.769 kcal (2) G-P(sol) polarization free energy of solvation -63.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds